Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013879

Physical Location & Seq

Genomic Coordinates Reverse (-)

56205721 .. 56206021

Gene Structure 301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGTGTGACCAAGCCTATCCAAAGAAACTTTCCTTTCAGTATTTTGAAGATCTCAAGAATGAATTTGAGCATGTTAATGGAGCCCAGATTAAAACAGCTGCAAGACCATATGCTTTCATTAAATTCGAAAACCAAGAAATTGTACCAGGATACTCGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

53

Amino Acids

6.27

Weight (kDa)

5.64

Isoelectric Point (pI)

20.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	1 - 43	1.6e-10	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52270 AT5G52270
fragaria_vesca	FvH4_6g47281
malus_domestica	MD01G1200300.v1.1 MD07G1268100.v1.1
prunus_persica	Prupe.2G293800_v2.0.a1
pyrus_communis	pycom07g24570
rosa_chinensis	RchiOBHm_Chr1g0333651 RchiOBHm_Chr5g0053861
rosa_roxburghii	Rroxscaffold_4G00317350
rosa_rugosa	Rorug02G0522400 Rorug06G0275000 Rorug07G0304600
rosa_samantha	Rh4AG111000 Rh6DG154600 Rh7AG307300 Rh7CG326300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	62, 122
AfaI	GTAC	2 cut(s)	144, 158
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	62, 122
AsuII	TTCGAA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	82
BspT104I	TTCGAA	1 cut(s)	126
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	126
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	143, 157
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	3 cut(s)	14, 83, 98
CviKI_1	RGCY	3 cut(s)	14, 83, 98
CviQI	GTAC	2 cut(s)	143, 157
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	1 cut(s)	74
FaiI	YATR	3 cut(s)	72, 109, 111
FatI	CATG	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	160
GluI	GCNGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	74
Hpy188III	TCNNGA	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	2 cut(s)	98, 132
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	3 cut(s)	62, 122, 138
MseI	TTAA	3 cut(s)	75, 90, 120
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	144, 158
RsaNI	GTAC	2 cut(s)	143, 157
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	75, 90, 120
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	126
SgeI	CNNG	7 cut(s)	23, 67, 83, 97, 114, 146, 158
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	62, 122, 138
SspMI	CTAG	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	145
TaqI	TCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	62, 122, 138
Tru1I	TTAA	3 cut(s)	75, 90, 120
Tru9I	TTAA	3 cut(s)	75, 90, 120
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	75, 106
XapI	RAATTY	2 cut(s)	62, 122
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.