Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013879

Physical Location & Seq

Genomic Coordinates Reverse (-)

28592822 .. 28594053

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G293800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTAAAGCTTACAATTGTTGGAAGGTTAAGTGATGGTCTGTGTCTTGCAAAAGGACCTTCTTCTTTGAATGAAGAACATGAAAACTTTTCATTTTACAAGAGACAAGGAGAGTTCATACTCAGAGAAATCTCAAGAGGAGCCTTGCCTCCTTCCAAGATGACCATTCGCGCCGATCATCACTGCTTTAACTACATGGTCGAGAATGGAATTGCCTTCATCACACTCTGCGACTCTTCATATCCAAGAAAACTAGCTTTCCATTATCTACAAGATTTGCAAAAGGAATTTGAAAACTTTGATAGTAGCCTCATTAAGAAAGTCACAAGACCATACTGCCTTGTCAAATTCGATGGTGTGATTGGGAATATTAGAAAGCAATACATTGATACAAGAACACAAGCTAATCTGTCAAAGCTTAATGCTAACCGGAAACAAGATTTAGACATTGCTACTGAAAATCTTTCTGAAATCATAGAGAGATGGAGATATTCAGAAATATTGGAAGGACCGTCGACTAGTACTTCACAAGCTGTTTCACCTATTTGGTGTTCGCCACGCCTTGAGGTGATCGCAATGAAATGGACGCCTATCACAGTCACTATTTTTGTTGTCACTGTTGTTCTTTGGGCCACCATAATCCATGCAGACGACAATTTCATGATTTTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin

Protein Analysis

225

Amino Acids

25.68

Weight (kDa)

7.65

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52270 AT5G52270
fragaria_vesca	FvH4_6g47281
malus_domestica	MD01G1200300.v1.1 MD07G1268100.v1.1
prunus_persica	Prupe.2G293800_v2.0.a1
pyrus_communis	pycom07g24570
rosa_chinensis	RchiOBHm_Chr1g0333651 RchiOBHm_Chr5g0053861
rosa_roxburghii	Rroxscaffold_4G00317350
rosa_rugosa	Rorug02G0522400 Rorug06G0275000 Rorug07G0304600
rosa_samantha	Rh4AG111000 Rh6DG154600 Rh7AG307300 Rh7CG326300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	515
AccII	CGCG	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	287, 347
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	70, 293
AhlI	ACTAGT	1 cut(s)	518
AluBI	AGCT	5 cut(s)	10, 257, 404, 418, 533
AluI	AGCT	5 cut(s)	10, 257, 404, 418, 533
Alw26I	GTCTC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	630
ApoI	RAATTY	2 cut(s)	287, 347
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	56, 509, 630
AsuHPI	GGTGA	2 cut(s)	531, 580
AvaII	GGWCC	2 cut(s)	56, 509
BccI	CCATC	3 cut(s)	29, 347, 477
BcoDI	GTCTC	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	2 cut(s)	254, 519
BmcAI	AGTACT	1 cut(s)	523
Bme18I	GGWCC	2 cut(s)	56, 509
BmgT120I	GGNCC	3 cut(s)	56, 509, 630
BmiI	GGNNCC	1 cut(s)	142
BpuEI	CTTGAG	2 cut(s)	118, 584
BsaHI	GRCGYC	1 cut(s)	587
BsaWI	WCCGGW	1 cut(s)	429
Bse3DI	GCAATG	2 cut(s)	447, 582
BseMI	GCAATG	2 cut(s)	447, 582
BseMII	CTCAG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	632
Bsp143I	GATC	2 cut(s)	175, 570
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	447, 582
BssMI	GATC	2 cut(s)	175, 570
BssNI	GRCGYC	1 cut(s)	587
Bst4CI	ACNGT	3 cut(s)	513, 598, 619
Bst6I	CTCTTC	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	587
BstDEI	CTNAG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	178, 573
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	2 cut(s)	175, 570
BstUI	CGCG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	632
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 615
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	56, 509, 630
CseI	GACGC	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	4 cut(s)	80, 196, 644, 661
CviJI	RGCY	8 cut(s)	10, 143, 257, 309, 404, 418, 533, 632
CviKI_1	RGCY	8 cut(s)	10, 143, 257, 309, 404, 418, 533, 632
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	177, 572
DpnII	GATC	2 cut(s)	175, 570
DraI	TTTAAA	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	56, 509
EcoO109I	RGGNCCY	1 cut(s)	56
FaeI	CATG	4 cut(s)	83, 199, 647, 664
FaiI	YATR	9 cut(s)	81, 119, 197, 241, 334, 476, 638, 645, 662
FatI	CATG	4 cut(s)	79, 195, 643, 660
FblI	GTMKAC	1 cut(s)	515
FspBI	CTAG	2 cut(s)	254, 519
GlaI	GCGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	1 cut(s)	595
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	4 cut(s)	83, 199, 647, 664
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	8, 416
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	2 cut(s)	531, 580
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	3 cut(s)	125, 469, 496
Hpy188III	TCNNGA	3 cut(s)	135, 202, 661
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	5 cut(s)	18, 69, 162, 226, 500
HpyCH4III	ACNGT	3 cut(s)	513, 598, 619
HpyCH4V	TGCA	3 cut(s)	50, 280, 647
HpyF3I	CTNAG	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	4 cut(s)	83, 199, 647, 664
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	175, 570
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	1 cut(s)	443
MaeI	CTAG	2 cut(s)	254, 519
MaeIII	GTNAC	3 cut(s)	322, 598, 613
MalI	GATC	2 cut(s)	177, 572
MboI	GATC	2 cut(s)	175, 570
MboII	GAAGA	3 cut(s)	54, 86, 228
MfeI	CAATTG	1 cut(s)	15
MluCI	AATT	5 cut(s)	15, 210, 287, 347, 655
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	4 cut(s)	131, 159, 320, 559
MseI	TTAA	5 cut(s)	29, 189, 315, 420, 668
MspI	CCGG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	171
NdeII	GATC	2 cut(s)	175, 570
NlaIII	CATG	4 cut(s)	83, 199, 647, 664
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	3 cut(s)	322, 598, 613
PagI	TCATGA	1 cut(s)	660
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	3 cut(s)	56, 509, 630
PspPPI	RGGWCCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
SalI	GTCGAC	1 cut(s)	514
SaqAI	TTAA	5 cut(s)	29, 189, 315, 420, 668
Sau3AI	GATC	2 cut(s)	175, 570
Sau96I	GGNCC	3 cut(s)	56, 509, 630
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	1 cut(s)	227
SetI	ASST	9 cut(s)	12, 29, 61, 259, 406, 420, 535, 544, 570
SinI	GGWCC	2 cut(s)	56, 509
SmlI	CTYRAG	2 cut(s)	133, 563
SmoI	CTYRAG	2 cut(s)	133, 563
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	5 cut(s)	15, 210, 287, 347, 655
SspI	AATATT	2 cut(s)	370, 501
SspMI	CTAG	2 cut(s)	254, 519
TaaI	ACNGT	3 cut(s)	513, 598, 619
TaqI	TCGA	3 cut(s)	201, 351, 515
TasI	AATT	5 cut(s)	15, 210, 287, 347, 655
TatI	WGTACW	1 cut(s)	521
Tru1I	TTAA	5 cut(s)	29, 189, 315, 420, 668
Tru9I	TTAA	5 cut(s)	29, 189, 315, 420, 668
TscAI	CASTG	2 cut(s)	188, 622
TseFI	GTSAC	3 cut(s)	322, 598, 613
Tsp45I	GTSAC	3 cut(s)	322, 598, 613
TspDTI	ATGAA	8 cut(s)	81, 87, 96, 106, 208, 228, 593, 649
TspRI	CASTG	2 cut(s)	188, 622
VpaK11BI	GGWCC	2 cut(s)	56, 509
XapI	RAATTY	2 cut(s)	287, 347
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	2 cut(s)	254, 519
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.