Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013879

Physical Location & Seq

Genomic Coordinates Reverse (-)

42599062 .. 42607388

Gene Structure 8327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTAGAGAAAGTCTTCGACATGGCAACCGTGGCACATAGATGGTGTCATGGGCGAGAAAAATTTCAAGCCCATGCCTTTTTTCTTGCCTGTGCTTGGGCGGCTGCCGGTTGGAGAGAAGTCGAACATGGGCGACGTCACGGGGCTGCGCAAAGAGAGACGCGGAAGAGAGAGGGCGTGAAGAGCACGAACGAATGGGGAGTGCCATTGTGGGTGCACGTCGAATCGGTTTTTTATCGCGTAGTGACAATTAAGTCCGATAGTGGGCGCACGTGGCTGGGAGAGGTTGGCTGCTTTGGGAATTTGAACCCAACGGTCAACAAATCTGATTCGTTCAAATATCTTGAAGATTTGAAGAATGAATTTGAGCATGTTAATGGAGCCCAGATTGAAACTGCTGCAAGACCATATGCGTTCATTAAATTCACATCCTCTCTCCAACTAAAGCTAAAAGATAGAATACATGCTTCAAAATCAATATTTGGGATTTTGATGAGAGAGAGTTCAACCCCGCAGCTTCTGGAGTTCTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

178

Amino Acids

20.52

Weight (kDa)

9.22

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52270 AT5G52270
fragaria_vesca	FvH4_6g47281
malus_domestica	MD01G1200300.v1.1 MD07G1268100.v1.1
prunus_persica	Prupe.2G293800_v2.0.a1
pyrus_communis	pycom07g24570
rosa_chinensis	RchiOBHm_Chr1g0333651 RchiOBHm_Chr5g0053861
rosa_roxburghii	Rroxscaffold_4G00317350
rosa_rugosa	Rorug02G0522400 Rorug06G0275000 Rorug07G0304600
rosa_samantha	Rh4AG111000 Rh6DG154600 Rh7AG307300 Rh7CG326300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	253
AatII	GACGTC	1 cut(s)	139
Acc16I	TGCGCA	1 cut(s)	150
AccII	CGCG	2 cut(s)	163, 240
AciI	CCGC	3 cut(s)	101, 163, 512
AcsI	RAATTY	4 cut(s)	62, 301, 362, 422
AcvI	CACGTG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	96, 264
AgsI	TTSAA	8 cut(s)	68, 307, 337, 347, 355, 392, 471, 507
AjiI	CACGTC	1 cut(s)	220
AloI	GAACNNNNNNTCC	1 cut(s)	515
AluBI	AGCT	2 cut(s)	448, 517
AluI	AGCT	2 cut(s)	448, 517
Alw21I	GWGCWC	2 cut(s)	188, 219
Alw26I	GTCTC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	520
ApaLI	GTGCAC	1 cut(s)	215
ApeKI	GCWGC	5 cut(s)	104, 146, 291, 398, 514
ApoI	RAATTY	4 cut(s)	62, 301, 362, 422
Asp700I	GAANNNNTTC	2 cut(s)	14, 63
AspLEI	GCGC	2 cut(s)	151, 270
BaeGI	GKGCMC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	385
BbrPI	CACGTG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	7
Bbv12I	GWGCWC	2 cut(s)	188, 219
BbvI	GCAGC	5 cut(s)	91, 133, 278, 385, 526
BccI	CCATC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	152
BisI	GCNGC	6 cut(s)	102, 105, 147, 292, 399, 515
BlsI	GCNGC	6 cut(s)	103, 106, 148, 293, 400, 516
BmgBI	CACGTC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	30
BsaXI	ACNNNNNCTCC	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 264
Bse118I	RCCGGY	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	428
BseLI	CCNNNNNNNGG	2 cut(s)	96, 264
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	5 cut(s)	91, 133, 278, 385, 526
BseYI	CCCAGC	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	163, 240
BsiHKAI	GWGCWC	2 cut(s)	188, 219
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	96, 264
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	3 cut(s)	188, 219, 385
BspACI	CCGC	3 cut(s)	101, 163, 512
BspFNI	CGCG	2 cut(s)	163, 240
BspLI	GGNNCC	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	31, 316
Bst6I	CTCTTC	2 cut(s)	161, 176
BstACI	GRCGYC	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	428
BstFNI	CGCG	2 cut(s)	163, 240
BstHHI	GCGC	2 cut(s)	151, 270
BstMAI	GTCTC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 101, 183, 274
BstNSI	RCATGY	2 cut(s)	374, 467
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	2 cut(s)	163, 240
BstV1I	GCAGC	5 cut(s)	91, 133, 278, 385, 526
BstV2I	GAAGAC	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	428
CaiI	CAGNNNCTG	1 cut(s)	520
CfoI	GCGC	2 cut(s)	151, 270
Cfr10I	RCCGGY	1 cut(s)	107
CseI	GACGC	1 cut(s)	169
CviAII	CATG	6 cut(s)	22, 50, 74, 128, 371, 464
CviJI	RGCY	8 cut(s)	71, 104, 146, 277, 291, 383, 448, 517
CviKI_1	RGCY	8 cut(s)	71, 104, 146, 277, 291, 383, 448, 517
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	161, 176
EarI	CTCTTC	2 cut(s)	161, 176
Eco24I	GRGCYC	1 cut(s)	385
Eco72I	CACGTG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	6 cut(s)	25, 53, 77, 131, 374, 467
FaiI	YATR	9 cut(s)	23, 39, 51, 75, 129, 372, 409, 411, 465
FatI	CATG	6 cut(s)	21, 49, 73, 127, 370, 463
FauI	CCCGC	1 cut(s)	519
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	6 cut(s)	102, 105, 147, 292, 399, 515
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	6 cut(s)	102, 105, 147, 292, 399, 515
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	2 cut(s)	150, 269
GluI	GCNGC	6 cut(s)	102, 105, 147, 292, 399, 515
GsaI	CCCAGC	1 cut(s)	281
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	151, 270
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	6 cut(s)	25, 53, 77, 131, 374, 467
Hin6I	GCGC	2 cut(s)	149, 268
HinP1I	GCGC	2 cut(s)	149, 268
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	224, 329
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	217, 319
Hpy188I	TCNGA	3 cut(s)	259, 328, 536
Hpy188III	TCNNGA	2 cut(s)	344, 521
Hpy8I	GTNNAC	2 cut(s)	217, 319
Hpy99I	CGWCG	2 cut(s)	138, 224
HpyCH4III	ACNGT	2 cut(s)	31, 316
HpyCH4IV	ACGT	3 cut(s)	136, 219, 272
HpyCH4V	TGCA	2 cut(s)	217, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 101, 183, 274
HpySE526I	ACGT	3 cut(s)	136, 219, 272
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	6 cut(s)	25, 53, 77, 131, 374, 467
HspAI	GCGC	2 cut(s)	149, 268
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	6 cut(s)	103, 121, 263, 398, 506, 514
Lsp1109I	GCAGC	5 cut(s)	91, 133, 278, 385, 526
MaeII	ACGT	3 cut(s)	136, 219, 272
MaeIII	GTNAC	2 cut(s)	137, 244
MboII	GAAGA	5 cut(s)	7, 178, 193, 359, 367
MhlI	GDGCHC	3 cut(s)	188, 219, 385
MluCI	AATT	5 cut(s)	62, 249, 301, 362, 422
MmeI	TCCRAC	2 cut(s)	92, 463
MnlI	CCTC	3 cut(s)	166, 277, 442
MroXI	GAANNNNTTC	2 cut(s)	14, 63
MseI	TTAA	3 cut(s)	252, 375, 420
MslI	CAYNNNNRTG	2 cut(s)	40, 375
MspI	CCGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	163, 240
MwoI	GCNNNNNNNGC	4 cut(s)	32, 101, 183, 274
NdeI	CATATG	1 cut(s)	409
NlaIII	CATG	6 cut(s)	25, 53, 77, 131, 374, 467
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	137, 244
NsbI	TGCGCA	1 cut(s)	150
NspI	RCATGY	2 cut(s)	374, 467
PciSI	GCTCTTC	1 cut(s)	176
PdmI	GAANNNNTTC	2 cut(s)	14, 63
PfeI	GAWTC	2 cut(s)	224, 329
PkrI	GCNGC	6 cut(s)	103, 106, 148, 293, 400, 516
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	273
PspCI	CACGTG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	520
RseI	CAYNNNNRTG	2 cut(s)	40, 375
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	252, 375, 420
SatI	GCNGC	6 cut(s)	102, 105, 147, 292, 399, 515
SduI	GDGCHC	3 cut(s)	188, 219, 385
SetI	ASST	6 cut(s)	139, 222, 275, 288, 450, 519
SmiMI	CAYNNNNRTG	2 cut(s)	40, 375
Sse9I	AATT	5 cut(s)	62, 249, 301, 362, 422
SsiI	CCGC	3 cut(s)	101, 163, 512
SspI	AATATT	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	31, 316
TaiI	ACGT	3 cut(s)	139, 222, 275
TaqI	TCGA	3 cut(s)	18, 123, 222
TasI	AATT	5 cut(s)	62, 249, 301, 362, 422
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	224, 329
Tru1I	TTAA	3 cut(s)	252, 375, 420
Tru9I	TTAA	3 cut(s)	252, 375, 420
TseFI	GTSAC	2 cut(s)	137, 244
TseI	GCWGC	5 cut(s)	104, 146, 291, 398, 514
Tsp45I	GTSAC	2 cut(s)	137, 244
TspDTI	ATGAA	2 cut(s)	375, 406
VneI	GTGCAC	1 cut(s)	215
XapI	RAATTY	4 cut(s)	62, 301, 362, 422
XceI	RCATGY	2 cut(s)	374, 467
XmnI	GAANNNNTTC	2 cut(s)	14, 63
ZraI	GACGTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.