Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013879

Physical Location & Seq

Genomic Coordinates Forward (+)

30465968 .. 30467479

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0304600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCGGCGGACCTAGGGCAAATGCTTACCAGTGGGGTTTTTCCCACAGCGTCTCAGACGCCTCTGCTCCTAAGCCTCGTTTCAAAGTCAGGACGCTTGCCTCTATTGTTTCTGACACCGTCGAGTCTTCCGTCAACCTCTGGAGGGGTTACATGCCCTCTTGCCAGTGGCATCTTTCGTCTCTCTGAATGGAAGCTAGACTTCAAGCCTAGTAACATCCTGCTCCAAACTCATGCGCAGACGACGAAGGAACGCCATTTTGGTTACTACGCTTGTGTGTTAGTTGATGTGGATTTAGCTATTGATCTCCCTATCTTGATTATTGTTGAACGTGAGCAATTTTGTTTTTCAGTGGAGATTCAATATGAAAATTTGCCAGATAAGTGTTTCAATTGCGGGGTCACTGGTCACTCTATGGGTCGCTGCAGACTATTGCAAAAGCAGGTGCCTAAGGCATACTCTCATCCTGACAAGAAACAACGCAAATTGTGCGTTAAAATTAAGGTAAATAAGGTTGTTGATGAACAAGCTGCTACTAACGCCGTTGTTCAAAAGCCTTTGATTCAAGCAGATATGGTTCAAGGCGAGAGCATTGTTGCAGTTGGGCAAGTGACAGCTGGAGAGTTCGATGATACTTTGGTTGGCACTAAGAATGTGAATTATGCTTTGGTAGAATCTAGTGTTCATCAAACTAAATTCTGTTGGGCTGATTTGGAAAATGAGGAATACCTTGGTCATCATACTTACGCTAGGCTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

253

Amino Acids

28.0

Weight (kDa)

7.03

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	117 - 143	9.1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52270 AT5G52270
fragaria_vesca	FvH4_6g47281
malus_domestica	MD01G1200300.v1.1 MD07G1268100.v1.1
prunus_persica	Prupe.2G293800_v2.0.a1
pyrus_communis	pycom07g24570
rosa_chinensis	RchiOBHm_Chr1g0333651 RchiOBHm_Chr5g0053861
rosa_roxburghii	Rroxscaffold_4G00317350
rosa_rugosa	Rorug02G0522400 Rorug06G0275000 Rorug07G0304600
rosa_samantha	Rh4AG111000 Rh6DG154600 Rh7AG307300 Rh7CG326300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc16I	TGCGCA	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	445
AciI	CCGC	2 cut(s)	8, 396
AcsI	RAATTY	2 cut(s)	370, 695
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	8 cut(s)	84, 205, 329, 362, 391, 551, 566, 581
AjuI	GAANNNNNNNTTGG	4 cut(s)	243, 275, 650, 682
AluBI	AGCT	4 cut(s)	196, 299, 530, 617
AluI	AGCT	4 cut(s)	196, 299, 530, 617
Alw26I	GTCTC	2 cut(s)	57, 185
ApeKI	GCWGC	2 cut(s)	423, 530
ApoI	RAATTY	2 cut(s)	370, 695
AspA2I	CCTAGG	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	10
AvrII	CCTAGG	1 cut(s)	13
AxyI	CCTNAGG	1 cut(s)	450
BaeI	ACNNNNGTAYC	2 cut(s)	624, 657
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	410, 517
BceAI	ACGGC	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	57, 185
BfaI	CTAG	5 cut(s)	14, 197, 210, 678, 750
BfmI	CTRYAG	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	424, 531
BlnI	CCTAGG	1 cut(s)	13
BlsI	GCNGC	2 cut(s)	425, 532
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	447
BmsI	GCATC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	162, 639
Bpu10I	CCTNAGC	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	13, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	3 cut(s)	30, 165, 409
Bse21I	CCTNAGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	13, 730
BseGI	GGATG	2 cut(s)	216, 463
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	68, 746
BseNI	ACTGG	3 cut(s)	30, 165, 409
BseXI	GCAGC	2 cut(s)	410, 517
BshNI	GGYRCC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	57, 185
BsmBI	CGTCTC	2 cut(s)	57, 185
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	2 cut(s)	8, 396
BspCNI	CTCAG	2 cut(s)	67, 747
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	428
BspMI	ACCTGC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	445
BsrI	ACTGG	3 cut(s)	30, 165, 409
BssECI	CCNNGG	2 cut(s)	13, 730
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	13, 730
Bst4CI	ACNGT	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	5 cut(s)	54, 71, 450, 648, 755
BstF5I	GGATG	2 cut(s)	216, 463
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	2 cut(s)	57, 185
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	489, 539
BstNSI	RCATGY	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	410, 517
BstV2I	GAAGAC	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	216, 463
BtsIMutI	CAGTG	4 cut(s)	37, 172, 357, 402
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	3 cut(s)	39, 67, 102
CviAII	CATG	2 cut(s)	153, 233
CviJI	RGCY	9 cut(s)	75, 196, 208, 299, 530, 556, 617, 707, 754
CviKI_1	RGCY	9 cut(s)	75, 196, 208, 299, 530, 556, 617, 707, 754
DdeI	CTNAG	5 cut(s)	54, 71, 450, 648, 755
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	13, 730
Eco47I	GGWCC	1 cut(s)	10
Eco81I	CCTNAGG	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	13, 730
ErhI	CCWWGG	2 cut(s)	13, 730
Esp3I	CGTCTC	2 cut(s)	57, 185
FaeI	CATG	2 cut(s)	156, 236
FaiI	YATR	8 cut(s)	154, 234, 366, 416, 457, 575, 663, 741
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	2 cut(s)	152, 232
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	424, 531
FokI	GGATG	2 cut(s)	203, 450
Fsp4HI	GCNGC	2 cut(s)	424, 531
FspBI	CTAG	5 cut(s)	14, 197, 210, 678, 750
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	424, 531
GsuI	CTGGAG	2 cut(s)	162, 639
HgaI	GACGC	3 cut(s)	39, 67, 102
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	156, 236
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	4 cut(s)	124, 358, 562, 674
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	57, 114, 187
Hpy188III	TCNNGA	4 cut(s)	90, 141, 316, 467
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	2 cut(s)	124, 247
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	426, 436, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	489, 539
HpyF3I	CTNAG	5 cut(s)	54, 71, 450, 648, 755
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	156, 236
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	72, 228
Lsp1109I	GCAGC	2 cut(s)	410, 517
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	5 cut(s)	14, 197, 210, 678, 750
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	6 cut(s)	148, 212, 263, 400, 407, 610
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	119
MfeI	CAATTG	1 cut(s)	391
MluCI	AATT	7 cut(s)	338, 370, 391, 485, 498, 658, 695
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	72, 86, 111, 137, 148, 168, 715
MseI	TTAA	2 cut(s)	495, 501
MspA1I	CMGCKG	1 cut(s)	617
MunI	CAATTG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	489, 539
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	156, 236
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	3 cut(s)	400, 407, 610
NsbI	TGCGCA	1 cut(s)	237
NspI	RCATGY	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	358, 562, 674
PflFI	GACNNNGTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	425, 532
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	617
SaqAI	TTAA	2 cut(s)	495, 501
SatI	GCNGC	2 cut(s)	424, 531
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	7 cut(s)	338, 370, 391, 485, 498, 658, 695
SsiI	CCGC	2 cut(s)	8, 396
SspMI	CTAG	5 cut(s)	14, 197, 210, 678, 750
StyI	CCWWGG	2 cut(s)	13, 730
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	122, 627
TasI	AATT	7 cut(s)	338, 370, 391, 485, 498, 658, 695
TfiI	GAWTC	3 cut(s)	358, 562, 674
Tru1I	TTAA	2 cut(s)	495, 501
Tru9I	TTAA	2 cut(s)	495, 501
TscAI	CASTG	4 cut(s)	37, 172, 357, 409
TseFI	GTSAC	3 cut(s)	400, 407, 610
TseI	GCWGC	2 cut(s)	423, 530
Tsp45I	GTSAC	3 cut(s)	400, 407, 610
TspDTI	ATGAA	3 cut(s)	381, 537, 674
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	4 cut(s)	37, 172, 357, 409
Tth111I	GACNNNGTC	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	2 cut(s)	370, 695
XceI	RCATGY	1 cut(s)	156
XmaJI	CCTAGG	1 cut(s)	13
XspI	CTAG	5 cut(s)	14, 197, 210, 678, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.