FvH4_6g50270
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013272
Physical Location & Seq
Reverse (-)
37424788 .. 37426707
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50270.t1

Sequence Viewer

Length: 534 bp
ATGGCTACCATTTCAGTCTCACCATTCTCACCTCTGCACCCAATCCCCACCCTCACTCATTCCCATTCCCTCTCCATTCCCATTCCTTCTCCCACTCTTTCGTTTCGAAACGTTTCCGGGTCCTTCAGGCGCTTGAGTTCAGTCAGAAACACCAGCTCCCGCAGACCCACAATTGTGAGGTCAGCCGAGGAAGACGCGCCTATTGAACCAGTCCCGGAAGAAGAAGCCGGCGCCGAGCAGCCCGTTTCGGTACCCGTTTCGCCCTCCGATACTCTCACCATGTTTTTTCAGGCGGATGGAACTTTGAGTGATGCTGCTGTGCCTGCAGTGACAAAAGCATTAGAGGAAACTCAAGGTATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAATTGTTGAGCTGAAAAAGCAGACAACAGTACAAGCTACCGGGGTTGCTTCCAGTTTAGTTGAGGCCATACAGAGTTCAGGATTCAAGCTACAGACGTTGAATTTGAGTTTTGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

18.86

Weight (kDa)

4.8

Isoelectric Point (pI)

67.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14910 AT5G14910
fragaria_vesca FvH4_6g50270
malus_domestica MD17G1039100.v1.1
prunus_persica Prupe.3G279900_v2.0.a1
pyrus_communis pycom17g03530
rosa_chinensis RchiOBHm_Chr2g0170541 RchiOBHm_Chr2g0170581
rosa_laevigata RLG00000021965
rosa_multiflora Rmu_sc0003787.1_g000037
rosa_roxburghii Rroxscaffold_2G00081210
rosa_rugosa Rorug02G0549700 Rorug02G0549700
rosa_samantha Rh2AG621600 Rh2BG633000 Rh2CG602300 Rh2DG645800
rosa_wichuraiana Rw2G051540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 2 cut(s) 230, 250
AccII CGCG 1 cut(s) 197
AciI CCGC 2 cut(s) 160, 293
AclI AACGTT 1 cut(s) 111
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 252, 426
AgsI TTSAA 5 cut(s) 206, 370, 377, 481, 496
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 4 cut(s) 156, 406, 431, 484
AluI AGCT 4 cut(s) 156, 406, 431, 484
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 2 cut(s) 238, 314
ApoI RAATTY 1 cut(s) 496
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
Asp700I GAANNNNTTC 1 cut(s) 112
Asp718I GGTACC 1 cut(s) 250
AspLEI GCGC 3 cut(s) 132, 199, 233
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 3 cut(s) 118, 215, 436
AsuHPI GGTGA 3 cut(s) 12, 21, 268
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 120
BanI GGYRCC 2 cut(s) 230, 250
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 250, 301
BccI CCATC 1 cut(s) 290
BcnI CCSGG 3 cut(s) 118, 215, 436
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 2 cut(s) 324, 485
BfoI RGCGCY 2 cut(s) 133, 234
BisI GCNGC 2 cut(s) 239, 315
BlsI GCNGC 2 cut(s) 240, 316
Bme1390I CCNGG 3 cut(s) 118, 215, 436
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 3 cut(s) 121, 232, 252
BmrFI CCNGG 3 cut(s) 118, 215, 436
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 2 cut(s) 154, 336
BpuMI CCSGG 3 cut(s) 118, 215, 436
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 186, 435
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 209, 447
BseDI CCNNGG 2 cut(s) 186, 435
BseGI GGATG 1 cut(s) 301
BseNI ACTGG 2 cut(s) 209, 447
BseXI GCAGC 2 cut(s) 250, 301
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 461
BshNI GGYRCC 2 cut(s) 230, 250
BsiSI CCGG 4 cut(s) 117, 215, 228, 435
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 106
BspACI CCGC 2 cut(s) 160, 293
BspANI GGCC 1 cut(s) 461
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 121, 232, 252
BspMAI CTGCAG 1 cut(s) 328
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 2 cut(s) 230, 250
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 209, 447
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 186, 435
BssNI GRCGYC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 229, 324
BstF5I GGATG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 2 cut(s) 133, 234
BstHHI GCGC 3 cut(s) 132, 199, 233
BstMAI GTCTC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 323, 412
BstSCI CCNGG 3 cut(s) 116, 213, 434
BstSFI CTRYAG 2 cut(s) 324, 485
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 250, 301
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 461
BtsCI GGATG 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 229, 324
CciI TCATGA 1 cut(s) 382
CfoI GCGC 3 cut(s) 132, 199, 233
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 251, 425
CviAII CATG 2 cut(s) 280, 383
CviJI RGCY 9 cut(s) 5, 156, 185, 227, 241, 406, 431, 461, 484
CviKI_1 RGCY 9 cut(s) 5, 156, 185, 227, 241, 406, 431, 461, 484
CviQI GTAC 2 cut(s) 251, 425
DinI GGCGCC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
EciI GGCGGA 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
FaeI CATG 2 cut(s) 283, 386
FaiI YATR 4 cut(s) 281, 384, 464, 532
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 279, 382
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 239, 315
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 239, 315
GlaI GCGC 3 cut(s) 131, 198, 232
GluI GCNGC 2 cut(s) 239, 315
HaeII RGCGCY 2 cut(s) 133, 234
HaeIII GGCC 1 cut(s) 461
HapII CCGG 4 cut(s) 117, 215, 228, 435
HgaI GACGC 1 cut(s) 203
HhaI GCGC 3 cut(s) 132, 199, 233
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 2 cut(s) 283, 386
Hin6I GCGC 3 cut(s) 130, 197, 231
HinP1I GCGC 3 cut(s) 130, 197, 231
HinfI GANTC 1 cut(s) 477
HpaII CCGG 4 cut(s) 117, 215, 228, 435
HphI GGTGA 3 cut(s) 12, 21, 268
Hpy188I TCNGA 2 cut(s) 146, 268
Hpy188III TCNNGA 2 cut(s) 383, 474
HpyAV CCTTC 3 cut(s) 96, 133, 364
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 2 cut(s) 111, 491
HpyCH4V TGCA 2 cut(s) 37, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 412
HpySE526I ACGT 2 cut(s) 111, 491
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 2 cut(s) 283, 386
HspAI GCGC 3 cut(s) 130, 197, 231
KasI GGCGCC 1 cut(s) 230
KpnI GGTACC 1 cut(s) 254
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 250, 301
LweI GCATC 1 cut(s) 301
MaeII ACGT 2 cut(s) 111, 491
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 5 cut(s) 203, 230, 233, 524, 527
MfeI CAATTG 1 cut(s) 171
MluCI AATT 4 cut(s) 171, 396, 496, 522
Mly113I GGCGCC 1 cut(s) 231
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 112
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 4 cut(s) 117, 215, 228, 435
MspR9I CCNGG 3 cut(s) 118, 215, 436
MunI CAATTG 1 cut(s) 171
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 323, 412
NaeI GCCGGC 1 cut(s) 229
NarI GGCGCC 1 cut(s) 231
NciI CCSGG 3 cut(s) 118, 215, 436
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 2 cut(s) 283, 386
NlaIV GGNNCC 3 cut(s) 121, 232, 252
NmeAIII GCCGAG 2 cut(s) 211, 259
NmuCI GTSAC 1 cut(s) 328
NspV TTCGAA 1 cut(s) 106
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 1 cut(s) 382
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 477
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 2 cut(s) 240, 316
PluTI GGCGCC 1 cut(s) 234
PpuMI RGGWCCY 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 121, 232, 252
PspPI GGNCC 1 cut(s) 120
PspPPI RGGWCCY 1 cut(s) 120
PstI CTGCAG 1 cut(s) 328
RsaI GTAC 2 cut(s) 252, 426
RsaNI GTAC 2 cut(s) 251, 425
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 2 cut(s) 239, 315
Sau96I GGNCC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 118, 215, 436
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 2 cut(s) 324, 485
SfoI GGCGCC 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 133, 351
SmoI CTYRAG 2 cut(s) 133, 351
Sse9I AATT 4 cut(s) 171, 396, 496, 522
SsiI CCGC 2 cut(s) 160, 293
SspDI GGCGCC 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 116, 213, 434
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 2 cut(s) 114, 494
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 171, 396, 496, 522
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 477
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 238, 314
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 371
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.