RchiOBHm_Chr2g0170581
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013272
Physical Location & Seq
Reverse (-)
84484612 .. 84486305
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53808

Sequence Viewer

Length: 558 bp
ATGGCTACAATTTCAGTCTCACCATTCTCACCTCTCCACCCAATCCCTACCCTCACTCATTCCCATTCCCATTCCCATTCCCTCTCCATTCCCATTCCTTCTCCCACCGTTTCGTTTCGAAACGTTTCCGGGTCCTTCAAGCTTTTGAGCTCTCTCAGGAACACCACCTCCCGCAGACCCACAATTCTGAGGTCAGCCCAGGAAGAAACGCCTGTTCCGGCCGAAGAACCAGTCCCGGAAGAAGAAGAAGGTAGTGCCGAGCAGCCCGTTTCGGTACCCGTTTCGCCCTCCGACACTCTCACCATGTTTTTTCAGGCTGATGGTACATTGAGTGATGCTGCTGTGCCTGCAGTGACCAAAGCATTAGAGGCAACTGAAGGGATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAGTTGTTGAGTTGAAAAAGCAGACAACAGTACAAGCTACTGGGGTGGCTTCCAGTTTGGTTGAGGCTATACAGAGTTCAGGGTTTAAGCTACAAACGTTGAATTTGAGTTTCGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.67

Weight (kDa)

4.83

Isoelectric Point (pI)

67.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14910 AT5G14910
fragaria_vesca FvH4_6g50270
malus_domestica MD17G1039100.v1.1
prunus_persica Prupe.3G279900_v2.0.a1
pyrus_communis pycom17g03530
rosa_chinensis RchiOBHm_Chr2g0170541 RchiOBHm_Chr2g0170581
rosa_laevigata RLG00000021965
rosa_multiflora Rmu_sc0003787.1_g000037
rosa_roxburghii Rroxscaffold_2G00081210
rosa_rugosa Rorug02G0549700 Rorug02G0549700
rosa_samantha Rh2AG621600 Rh2BG633000 Rh2CG602300 Rh2DG645800
rosa_wichuraiana Rw2G051540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 1 cut(s) 172
AclI AACGTT 2 cut(s) 123, 515
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 3 cut(s) 276, 325, 450
AgsI TTSAA 5 cut(s) 139, 394, 401, 433, 520
AjnI CCWGG 1 cut(s) 198
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 4 cut(s) 142, 150, 455, 508
AluI AGCT 4 cut(s) 142, 150, 455, 508
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 262, 338
ApoI RAATTY 1 cut(s) 520
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 124
Asp718I GGTACC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 130, 236
AsuHPI GGTGA 3 cut(s) 12, 21, 292
AsuII TTCGAA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 274, 325
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 2 cut(s) 130, 236
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 2 cut(s) 263, 339
BlsI GCNGC 2 cut(s) 264, 340
Bme1390I CCNGG 3 cut(s) 130, 200, 236
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 133, 276
BmrFI CCNGG 3 cut(s) 130, 200, 236
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 2 cut(s) 130, 236
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bse1I ACTGG 3 cut(s) 230, 463, 471
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 169, 179
BseNI ACTGG 3 cut(s) 230, 463, 471
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 274, 325
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 3 cut(s) 129, 218, 236
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 152
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 168, 180
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 133, 276
BspMAI CTGCAG 1 cut(s) 352
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 274
BsrI ACTGG 3 cut(s) 230, 463, 471
BssECI CCNNGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 109, 448
Bst6I CTCTTC 1 cut(s) 534
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 155, 188
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 347, 368
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 3 cut(s) 128, 198, 234
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 274, 325
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 348
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 275, 324, 449
CviAII CATG 2 cut(s) 304, 407
CviQI GTAC 3 cut(s) 275, 324, 449
DdeI CTNAG 2 cut(s) 155, 188
EaeI YGGCCR 1 cut(s) 219
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Ecl136II GAGCTC 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 2 cut(s) 307, 410
FaiI YATR 4 cut(s) 305, 408, 488, 556
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 303, 406
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 263, 339
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 263, 339
GluI GCNGC 2 cut(s) 263, 339
HaeIII GGCC 1 cut(s) 221
HapII CCGG 3 cut(s) 129, 218, 236
Hin1II CATG 2 cut(s) 307, 410
HindIII AAGCTT 1 cut(s) 140
HpaII CCGG 3 cut(s) 129, 218, 236
HphI GGTGA 3 cut(s) 12, 21, 292
Hpy188I TCNGA 2 cut(s) 189, 292
Hpy188III TCNNGA 2 cut(s) 157, 407
HpyAV CCTTC 5 cut(s) 108, 145, 242, 371, 388
HpyCH4III ACNGT 2 cut(s) 109, 448
HpyCH4IV ACGT 2 cut(s) 123, 515
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 368
HpyF3I CTNAG 2 cut(s) 155, 188
HpySE526I ACGT 2 cut(s) 123, 515
Hsp92II CATG 2 cut(s) 307, 410
KpnI GGTACC 1 cut(s) 278
Lsp1109I GCAGC 2 cut(s) 274, 325
LweI GCATC 1 cut(s) 325
MaeII ACGT 2 cut(s) 123, 515
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 7 cut(s) 215, 236, 251, 254, 257, 548, 551
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 4 cut(s) 9, 183, 520, 546
MmeI TCCRAC 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 504
MspI CCGG 3 cut(s) 129, 218, 236
MspR9I CCNGG 3 cut(s) 130, 200, 236
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 347, 368
NciI CCSGG 2 cut(s) 130, 236
NlaIII CATG 2 cut(s) 307, 410
NlaIV GGNNCC 2 cut(s) 133, 276
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 352
NspV TTCGAA 1 cut(s) 118
PagI TCATGA 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 2 cut(s) 264, 340
PpuMI RGGWCCY 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 152
Psp1406I AACGTT 2 cut(s) 123, 515
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 133, 276
PspPI GGNCC 1 cut(s) 132
PspPPI RGGWCCY 1 cut(s) 132
PstI CTGCAG 1 cut(s) 352
RsaI GTAC 3 cut(s) 276, 325, 450
RsaNI GTAC 3 cut(s) 275, 324, 449
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 2 cut(s) 263, 339
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 130, 200, 236
SduI GDGCHC 1 cut(s) 152
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 1 cut(s) 132
Sse9I AATT 4 cut(s) 9, 183, 520, 546
SsiI CCGC 1 cut(s) 172
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 128, 198, 234
TaaI ACNGT 2 cut(s) 109, 448
TaiI ACGT 2 cut(s) 126, 518
TaqI TCGA 2 cut(s) 118, 531
TasI AATT 4 cut(s) 9, 183, 520, 546
TatI WGTACW 1 cut(s) 448
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 262, 338
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 395
TspRI CASTG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.