Rmu_sc0003787.1_g000037
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003787.1
OG0013272
Physical Location & Seq
Forward (+)
193357 .. 194031
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003787.1_g000037.1.cds

Sequence Viewer

Length: 480 bp
atggctacaatttcagtctcaccattctcacctctccacccaatccctaccctcactcattcccattcccattcccattccctctccattcccattccttctcccaccgtttcgtttcgaaacgtttccgggtccttcaagcttttgagctctctcaggaacaccacctcccgcagacccacaattctgaggtcagccgaggaagaaacgcctgttccggccgaagaaccagtcccggaagaaaaacaagaagaagaagaaggtagtgccgagcagcccgtttcggtacccgtttcgccctccgacactctcaccatgttttttcaggctgatggtacattgagtgatgctgctgtgcctgcagtgaccaaagccttagaggcaactgaagggattaccaacttgaaggttgaagttcatgagggtattggagttgttgaggtaagtgtggacgacattatttgcatttcttacaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.01

Weight (kDa)

4.77

Isoelectric Point (pI)

66.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14910 AT5G14910
fragaria_vesca FvH4_6g50270
malus_domestica MD17G1039100.v1.1
prunus_persica Prupe.3G279900_v2.0.a1
pyrus_communis pycom17g03530
rosa_chinensis RchiOBHm_Chr2g0170541 RchiOBHm_Chr2g0170581
rosa_laevigata RLG00000021965
rosa_multiflora Rmu_sc0003787.1_g000037
rosa_roxburghii Rroxscaffold_2G00081210
rosa_rugosa Rorug02G0549700 Rorug02G0549700
rosa_samantha Rh2AG621600 Rh2BG633000 Rh2CG602300 Rh2DG645800
rosa_wichuraiana Rw2G051540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AciI CCGC 1 cut(s) 172
AclI AACGTT 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 2 cut(s) 288, 337
AgsI TTSAA 3 cut(s) 139, 406, 413
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 142, 150
AluI AGCT 2 cut(s) 142, 150
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 274, 350
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 124
Asp718I GGTACC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 130, 236
AsuHPI GGTGA 3 cut(s) 12, 21, 304
AsuII TTCGAA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 286, 337
BccI CCATC 1 cut(s) 326
BcnI CCSGG 2 cut(s) 130, 236
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 2 cut(s) 275, 351
BlsI GCNGC 2 cut(s) 276, 352
Bme1390I CCNGG 2 cut(s) 130, 236
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 133, 288
BmrFI CCNGG 2 cut(s) 130, 236
BmsI GCATC 1 cut(s) 337
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 2 cut(s) 130, 236
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 169, 179
BseNI ACTGG 1 cut(s) 230
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 286, 337
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 286
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 3 cut(s) 129, 218, 236
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 152
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 168, 180
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 133, 288
BspMAI CTGCAG 1 cut(s) 364
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 155, 188, 376
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 359, 380
BstSCI CCNGG 2 cut(s) 128, 234
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 286, 337
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 360
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 2 cut(s) 287, 336
CviAII CATG 2 cut(s) 316, 419
CviJI RGCY 8 cut(s) 5, 142, 150, 197, 221, 277, 329, 374
CviKI_1 RGCY 8 cut(s) 5, 142, 150, 197, 221, 277, 329, 374
CviQI GTAC 2 cut(s) 287, 336
DdeI CTNAG 3 cut(s) 155, 188, 376
EaeI YGGCCR 1 cut(s) 219
EagI CGGCCG 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 2 cut(s) 319, 422
FaiI YATR 2 cut(s) 317, 420
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 315, 418
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 275, 351
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 275, 351
GluI GCNGC 2 cut(s) 275, 351
HaeIII GGCC 1 cut(s) 221
HapII CCGG 3 cut(s) 129, 218, 236
Hin1II CATG 2 cut(s) 319, 422
HindIII AAGCTT 1 cut(s) 140
HpaII CCGG 3 cut(s) 129, 218, 236
HphI GGTGA 3 cut(s) 12, 21, 304
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 189, 304
Hpy188III TCNNGA 2 cut(s) 157, 419
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 5 cut(s) 108, 145, 254, 383, 400
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 362, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 380
HpyF3I CTNAG 3 cut(s) 155, 188, 376
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 319, 422
KpnI GGTACC 1 cut(s) 290
LpnPI CCDG 8 cut(s) 142, 142, 225, 231, 243, 249, 311, 372
Lsp1109I GCAGC 2 cut(s) 286, 337
LweI GCATC 1 cut(s) 337
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 364
MboII GAAGA 6 cut(s) 215, 236, 251, 263, 266, 269
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 9, 183
MmeI TCCRAC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 124
MspI CCGG 3 cut(s) 129, 218, 236
MspR9I CCNGG 2 cut(s) 130, 236
MwoI GCNNNNNNNGC 2 cut(s) 359, 380
NciI CCSGG 2 cut(s) 130, 236
NlaIII CATG 2 cut(s) 319, 422
NlaIV GGNNCC 2 cut(s) 133, 288
NmeAIII GCCGAG 2 cut(s) 223, 295
NmuCI GTSAC 1 cut(s) 364
NspV TTCGAA 1 cut(s) 118
PagI TCATGA 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 2 cut(s) 276, 352
PpuMI RGGWCCY 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 152
Psp1406I AACGTT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 133, 288
PspPI GGNCC 1 cut(s) 132
PspPPI RGGWCCY 1 cut(s) 132
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 2 cut(s) 288, 337
RsaNI GTAC 2 cut(s) 287, 336
SacI GAGCTC 1 cut(s) 152
SatI GCNGC 2 cut(s) 275, 351
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 130, 236
SduI GDGCHC 1 cut(s) 152
SetI ASST 9 cut(s) 34, 126, 144, 152, 170, 194, 265, 411, 444
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 1 cut(s) 132
Sse9I AATT 2 cut(s) 9, 183
SsiI CCGC 1 cut(s) 172
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 2 cut(s) 128, 234
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 118
TasI AATT 2 cut(s) 9, 183
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 2 cut(s) 274, 350
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 407
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.