Rw2G051540
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013272
Physical Location & Seq
Reverse (-)
79244054 .. 79245691
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051540.1

Sequence Viewer

Length: 564 bp
ATGGCTACCATTTCAGTCTCACCATTCTCACCTCTCCACGCAATCCCTACCCTCACTCATTCCCATTCCCATTCCCTCTCCATTCCCATTCCTTCTCCCACCGTTTCGTTTCGAAACGTTTCCGGGTCCTTCAAGCTTTTGAGCTCTCTCAGGAACACCACCTCCCGCAGACCCACAATTCTGAGGTCAGCCCAGGAAGAAACGCCTGTTCCGGCCGAAGAACCAGTCCCGGAAGAAAAAGAAGAAGAAGAAGAAGGTAGCGCCGAGCAGCCCGTTTCGGTACCCGTTTCGCCCTCCGACACTCTCACCATGTTTTTTCAGGCTGATGGTACATTGAGTGATGCTGCTGTGCCTGCAGTGACCAAAGCATTAGAGGCAACTGAAGGGATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAGTTGTTGAGTTGAAAAAGCAGACAACAGTACAAGCTACGGGGGTGGCTTCCAGTTTGGTTGAGGCCATACAGAGTTCGGGGTTTAAGCTACAAACGTTGAATTTGAGTTTCGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

19.93

Weight (kDa)

4.67

Isoelectric Point (pI)

70.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14910 AT5G14910
fragaria_vesca FvH4_6g50270
malus_domestica MD17G1039100.v1.1
prunus_persica Prupe.3G279900_v2.0.a1
pyrus_communis pycom17g03530
rosa_chinensis RchiOBHm_Chr2g0170541 RchiOBHm_Chr2g0170581
rosa_laevigata RLG00000021965
rosa_multiflora Rmu_sc0003787.1_g000037
rosa_roxburghii Rroxscaffold_2G00081210
rosa_rugosa Rorug02G0549700 Rorug02G0549700
rosa_samantha Rh2AG621600 Rh2BG633000 Rh2CG602300 Rh2DG645800
rosa_wichuraiana Rw2G051540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AciI CCGC 1 cut(s) 166
AclI AACGTT 2 cut(s) 117, 521
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 3 cut(s) 282, 331, 456
AgsI TTSAA 5 cut(s) 133, 400, 407, 439, 526
AjnI CCWGG 1 cut(s) 192
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 4 cut(s) 136, 144, 461, 514
AluI AGCT 4 cut(s) 136, 144, 461, 514
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 2 cut(s) 213, 489
ApeKI GCWGC 2 cut(s) 268, 344
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 118
Asp718I GGTACC 1 cut(s) 280
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 126
AsuC2I CCSGG 2 cut(s) 124, 230
AsuHPI GGTGA 3 cut(s) 12, 21, 298
AsuII TTCGAA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 280, 331
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 2 cut(s) 124, 230
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 264
BisI GCNGC 2 cut(s) 269, 345
BlsI GCNGC 2 cut(s) 270, 346
Bme1390I CCNGG 3 cut(s) 124, 194, 230
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 127, 282
BmrFI CCNGG 3 cut(s) 124, 194, 230
BmsI GCATC 1 cut(s) 331
Bpu14I TTCGAA 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 124, 230
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bse1I ACTGG 2 cut(s) 224, 477
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 163, 173
BseNI ACTGG 2 cut(s) 224, 477
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 280, 331
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 215, 491
BshNI GGYRCC 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 3 cut(s) 123, 212, 230
BslFI GGGAC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 215, 491
Bsp119I TTCGAA 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 146
BspACI CCGC 1 cut(s) 166
BspANI GGCC 2 cut(s) 215, 491
BspCNI CTCAG 2 cut(s) 162, 174
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 127, 282
BspMAI CTGCAG 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 224, 477
BssECI CCNNGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 103, 454
Bst6I CTCTTC 1 cut(s) 540
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 149, 182
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 353, 374
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 3 cut(s) 122, 192, 228
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 280, 331
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 215, 491
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 412
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 126
Csp6I GTAC 3 cut(s) 281, 330, 455
CviAII CATG 2 cut(s) 310, 413
CviQI GTAC 3 cut(s) 281, 330, 455
DdeI CTNAG 2 cut(s) 149, 182
EaeI YGGCCR 1 cut(s) 213
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 126
Eco52I CGGCCG 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 2 cut(s) 313, 416
FaiI YATR 4 cut(s) 311, 414, 494, 562
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 309, 412
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 269, 345
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 269, 345
GlaI GCGC 1 cut(s) 262
GluI GCNGC 2 cut(s) 269, 345
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 2 cut(s) 215, 491
HapII CCGG 3 cut(s) 123, 212, 230
HhaI GCGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 313, 416
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 134
HpaII CCGG 3 cut(s) 123, 212, 230
HphI GGTGA 3 cut(s) 12, 21, 298
Hpy188I TCNGA 2 cut(s) 183, 298
Hpy188III TCNNGA 2 cut(s) 151, 413
HpyAV CCTTC 5 cut(s) 102, 139, 248, 377, 394
HpyCH4III ACNGT 2 cut(s) 103, 454
HpyCH4IV ACGT 2 cut(s) 117, 521
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 374
HpyF3I CTNAG 2 cut(s) 149, 182
HpySE526I ACGT 2 cut(s) 117, 521
Hsp92II CATG 2 cut(s) 313, 416
HspAI GCGC 1 cut(s) 261
KpnI GGTACC 1 cut(s) 284
Lsp1109I GCAGC 2 cut(s) 280, 331
LweI GCATC 1 cut(s) 331
MaeII ACGT 2 cut(s) 117, 521
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 9 cut(s) 209, 230, 245, 254, 257, 260, 263, 554, 557
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 3 cut(s) 177, 526, 552
MmeI TCCRAC 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 1 cut(s) 510
MspI CCGG 3 cut(s) 123, 212, 230
MspR9I CCNGG 3 cut(s) 124, 194, 230
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 353, 374
NciI CCSGG 2 cut(s) 124, 230
NlaIII CATG 2 cut(s) 313, 416
NlaIV GGNNCC 2 cut(s) 127, 282
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 358
NspV TTCGAA 1 cut(s) 112
PagI TCATGA 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 118
PfoI TCCNGGA 1 cut(s) 228
PkrI GCNGC 2 cut(s) 270, 346
PpuMI RGGWCCY 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 146
Psp1406I AACGTT 2 cut(s) 117, 521
Psp5II RGGWCCY 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 127, 282
PspPI GGNCC 1 cut(s) 126
PspPPI RGGWCCY 1 cut(s) 126
PstI CTGCAG 1 cut(s) 358
RsaI GTAC 3 cut(s) 282, 331, 456
RsaNI GTAC 3 cut(s) 281, 330, 455
SacI GAGCTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 2 cut(s) 269, 345
Sau96I GGNCC 1 cut(s) 126
ScrFI CCNGG 3 cut(s) 124, 194, 230
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 112
SinI GGWCC 1 cut(s) 126
Sse9I AATT 3 cut(s) 177, 526, 552
SsiI CCGC 1 cut(s) 166
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 122, 192, 228
TaaI ACNGT 2 cut(s) 103, 454
TaiI ACGT 2 cut(s) 120, 524
TaqI TCGA 2 cut(s) 112, 537
TasI AATT 3 cut(s) 177, 526, 552
TatI WGTACW 1 cut(s) 454
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 268, 344
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 401
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.