Rh2CG602300
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013272
Physical Location & Seq
Reverse (-)
77763831 .. 77764987
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG602300.1

Sequence Viewer

Length: 561 bp
ATGGCTACAATTTCAGTCTCACCATTCTCACCTCTCCACGCAATCCCTACCCTCACTCATTCCCATTCCCTCTCCATTCCCATTCCTTCTCCCACCGTTTCGTTTCGAAACGTTTCCGCGTCCTTCAAGCTTTTGAGCTCTCTCAGGAACACCACCCCCCGCAGACCCACAATTCTGAGGTCAGCCGAGGAAGAAACGCCTGTTCCGGCCGAAGAACCAGTCCCGGAAGAAAAAGAAGAAGAAGAAGAAGAAGGTAGTGCCGAGCAGCCCGTTTCGGTACCCGTTTCGCCCTCCGACACTCTCACCATGTTTTTTCAGGCTGATGGTACATTGAGTGATGCTGCTGTGCCTGCAGTGACCAAAGCATTAGAGGCAGCTGAAGGGATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAGTTGTTGAGTTGAAAAAGCAGACAACAGTACAAGCTACTGGGGTGGCTTCCAGTTTGGTTGAGGCCATACAGAGTTCAGGGTTTAAGCTACAAACGTTGAATTTGAGTTTCGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.83

Weight (kDa)

4.53

Isoelectric Point (pI)

71.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14910 AT5G14910
fragaria_vesca FvH4_6g50270
malus_domestica MD17G1039100.v1.1
prunus_persica Prupe.3G279900_v2.0.a1
pyrus_communis pycom17g03530
rosa_chinensis RchiOBHm_Chr2g0170541 RchiOBHm_Chr2g0170581
rosa_laevigata RLG00000021965
rosa_multiflora Rmu_sc0003787.1_g000037
rosa_roxburghii Rroxscaffold_2G00081210
rosa_rugosa Rorug02G0549700 Rorug02G0549700
rosa_samantha Rh2AG621600 Rh2BG633000 Rh2CG602300 Rh2DG645800
rosa_wichuraiana Rw2G051540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 277
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 117, 160
AclI AACGTT 2 cut(s) 111, 518
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 3 cut(s) 279, 328, 453
AgsI TTSAA 5 cut(s) 127, 397, 404, 436, 523
AluBI AGCT 5 cut(s) 130, 138, 377, 458, 511
AluI AGCT 5 cut(s) 130, 138, 377, 458, 511
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 2 cut(s) 207, 486
ApeKI GCWGC 3 cut(s) 265, 341, 374
ApoI RAATTY 1 cut(s) 523
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 1 cut(s) 112
Asp718I GGTACC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 12, 21, 295
AsuII TTCGAA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 3 cut(s) 277, 328, 386
BccI CCATC 1 cut(s) 317
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 3 cut(s) 266, 342, 375
BlsI GCNGC 3 cut(s) 267, 343, 376
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 218, 466, 474
BseDI CCNNGG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 157, 167
BseNI ACTGG 3 cut(s) 218, 466, 474
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 3 cut(s) 277, 328, 386
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 209, 488
BshNI GGYRCC 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 206, 224
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 209, 488
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 140
BspACI CCGC 2 cut(s) 117, 160
BspANI GGCC 2 cut(s) 209, 488
BspCNI CTCAG 2 cut(s) 156, 168
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 355
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 277
BsrI ACTGG 3 cut(s) 218, 466, 474
BssECI CCNNGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 97, 451
Bst6I CTCTTC 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 143, 176
BstFNI CGCG 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 350, 371
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 277, 328, 386
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 2 cut(s) 209, 488
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 351
CciI TCATGA 1 cut(s) 409
CseI GACGC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 278, 327, 452
CviAII CATG 2 cut(s) 307, 410
CviQI GTAC 3 cut(s) 278, 327, 452
DdeI CTNAG 2 cut(s) 143, 176
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 140
Eco52I CGGCCG 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 2 cut(s) 310, 413
FaiI YATR 4 cut(s) 308, 411, 491, 559
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 306, 409
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 3 cut(s) 266, 342, 375
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 266, 342, 375
GluI GCNGC 3 cut(s) 266, 342, 375
HaeIII GGCC 2 cut(s) 209, 488
HapII CCGG 2 cut(s) 206, 224
HgaI GACGC 1 cut(s) 108
Hin1II CATG 2 cut(s) 310, 413
HindIII AAGCTT 1 cut(s) 128
HpaII CCGG 2 cut(s) 206, 224
HphI GGTGA 3 cut(s) 12, 21, 295
Hpy188I TCNGA 2 cut(s) 177, 295
Hpy188III TCNNGA 2 cut(s) 145, 410
HpyAV CCTTC 5 cut(s) 96, 133, 245, 374, 391
HpyCH4III ACNGT 2 cut(s) 97, 451
HpyCH4IV ACGT 2 cut(s) 111, 518
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 371
HpyF3I CTNAG 2 cut(s) 143, 176
HpySE526I ACGT 2 cut(s) 111, 518
Hsp92II CATG 2 cut(s) 310, 413
KpnI GGTACC 1 cut(s) 281
Lsp1109I GCAGC 3 cut(s) 277, 328, 386
LweI GCATC 1 cut(s) 328
MaeII ACGT 2 cut(s) 111, 518
MaeIII GTNAC 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 4 cut(s) 9, 171, 523, 549
MmeI TCCRAC 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 206, 224
MspR9I CCNGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 350, 371
NciI CCSGG 1 cut(s) 224
NlaIII CATG 2 cut(s) 310, 413
NlaIV GGNNCC 1 cut(s) 279
NmeAIII GCCGAG 2 cut(s) 211, 286
NmuCI GTSAC 1 cut(s) 355
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 3 cut(s) 267, 343, 376
Psp124BI GAGCTC 1 cut(s) 140
Psp1406I AACGTT 2 cut(s) 111, 518
PspN4I GGNNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 3 cut(s) 279, 328, 453
RsaNI GTAC 3 cut(s) 278, 327, 452
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 3 cut(s) 266, 342, 375
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 351
SfuI TTCGAA 1 cut(s) 106
Sse9I AATT 4 cut(s) 9, 171, 523, 549
SsiI CCGC 2 cut(s) 117, 160
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 97, 451
TaiI ACGT 2 cut(s) 114, 521
TaqI TCGA 2 cut(s) 106, 534
TasI AATT 4 cut(s) 9, 171, 523, 549
TatI WGTACW 1 cut(s) 451
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 3 cut(s) 265, 341, 374
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 1 cut(s) 360
XapI RAATTY 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.