Rh2DG645800
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013272
Physical Location & Seq
Reverse (-)
87238552 .. 87239706
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG645800.1

Sequence Viewer

Length: 558 bp
ATGGCTACCATTTCAGTCTCACCATTCTCACCTCTCCACCCAATCCCTACCCTCACTCATTCCCATTCCCTCTCCATTCCCATTCCTTCTCCCACCGTTTCGTTTCGAAACGTTTCCTGGTCCTTCAAGCTTTTGAGCTCTCTCAGGAACACCACCTCCCGCAGACCCACAATTCTGAGGTCAGCCGAGGAAGAAACGCCTGTTCCGGCCGAAGAACCTGTCCCGGAAGAAAAAGAAGAAGAAGAAGAAGGTAGTGCCGAGCAGCCCGTTTCGGTACCCGTTTCGCCCTCCGACACTCTCACCATGTTTTTTCAGGCTGATGGTACATTGAGTGATGCTGCTGTGCCTGCAGTGACCAAAGCCTTAGAGGCAACTGAAGGGATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAGTTGTTGAGTTGAAAAAGCAGACAACAGTACAAGCTACCGGGGTGGCTTCCAGTTTGGTTGAGGCCATACAGAGTTCGGGGTTTAAGCTACAAACGTTGAATTTGAGTTTCGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.86

Weight (kDa)

4.57

Isoelectric Point (pI)

72.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14910 AT5G14910
fragaria_vesca FvH4_6g50270
malus_domestica MD17G1039100.v1.1
prunus_persica Prupe.3G279900_v2.0.a1
pyrus_communis pycom17g03530
rosa_chinensis RchiOBHm_Chr2g0170541 RchiOBHm_Chr2g0170581
rosa_laevigata RLG00000021965
rosa_multiflora Rmu_sc0003787.1_g000037
rosa_roxburghii Rroxscaffold_2G00081210
rosa_rugosa Rorug02G0549700 Rorug02G0549700
rosa_samantha Rh2AG621600 Rh2BG633000 Rh2CG602300 Rh2DG645800
rosa_wichuraiana Rw2G051540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 1 cut(s) 160
AclI AACGTT 2 cut(s) 111, 515
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 3 cut(s) 276, 325, 450
AgsI TTSAA 5 cut(s) 127, 394, 401, 433, 520
AjnI CCWGG 1 cut(s) 116
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 130, 138, 455, 508
AluI AGCT 4 cut(s) 130, 138, 455, 508
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 2 cut(s) 207, 483
ApeKI GCWGC 2 cut(s) 262, 338
ApoI RAATTY 1 cut(s) 520
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 1 cut(s) 112
Asp718I GGTACC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 2 cut(s) 224, 460
AsuHPI GGTGA 3 cut(s) 12, 21, 292
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 274, 325
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 2 cut(s) 224, 460
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 348
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 2 cut(s) 263, 339
BlsI GCNGC 2 cut(s) 264, 340
Bme1390I CCNGG 3 cut(s) 118, 224, 460
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 3 cut(s) 118, 224, 460
BmsI GCATC 1 cut(s) 325
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 2 cut(s) 224, 460
BsaJI CCNNGG 2 cut(s) 186, 459
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 186, 459
BseMII CTCAG 2 cut(s) 157, 167
BseNI ACTGG 1 cut(s) 471
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 274, 325
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 209, 485
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 3 cut(s) 206, 224, 459
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 209, 485
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 140
BspACI CCGC 1 cut(s) 160
BspANI GGCC 2 cut(s) 209, 485
BspCNI CTCAG 2 cut(s) 156, 168
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 352
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 186, 459
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 97, 448
Bst6I CTCTTC 1 cut(s) 534
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 143, 176, 364
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 347, 368
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 116, 222, 458
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 274, 325
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 2 cut(s) 209, 485
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 348
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 3 cut(s) 275, 324, 449
CviAII CATG 2 cut(s) 304, 407
CviQI GTAC 3 cut(s) 275, 324, 449
DdeI CTNAG 3 cut(s) 143, 176, 364
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Ecl136II GAGCTC 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 2 cut(s) 307, 410
FaiI YATR 4 cut(s) 305, 408, 488, 556
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 303, 406
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 263, 339
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 263, 339
GluI GCNGC 2 cut(s) 263, 339
HaeIII GGCC 2 cut(s) 209, 485
HapII CCGG 3 cut(s) 206, 224, 459
Hin1II CATG 2 cut(s) 307, 410
HindIII AAGCTT 1 cut(s) 128
HpaII CCGG 3 cut(s) 206, 224, 459
HphI GGTGA 3 cut(s) 12, 21, 292
Hpy188I TCNGA 2 cut(s) 177, 292
Hpy188III TCNNGA 2 cut(s) 145, 407
HpyAV CCTTC 5 cut(s) 96, 133, 242, 371, 388
HpyCH4III ACNGT 2 cut(s) 97, 448
HpyCH4IV ACGT 2 cut(s) 111, 515
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 368
HpyF3I CTNAG 3 cut(s) 143, 176, 364
HpySE526I ACGT 2 cut(s) 111, 515
Hsp92II CATG 2 cut(s) 307, 410
KpnI GGTACC 1 cut(s) 278
Lsp1109I GCAGC 2 cut(s) 274, 325
LweI GCATC 1 cut(s) 325
MaeII ACGT 2 cut(s) 111, 515
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 9 cut(s) 203, 224, 239, 248, 251, 254, 257, 548, 551
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 3 cut(s) 171, 520, 546
MmeI TCCRAC 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 1 cut(s) 504
MspI CCGG 3 cut(s) 206, 224, 459
MspR9I CCNGG 3 cut(s) 118, 224, 460
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 347, 368
NciI CCSGG 2 cut(s) 224, 460
NlaIII CATG 2 cut(s) 307, 410
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 2 cut(s) 211, 283
NmuCI GTSAC 1 cut(s) 352
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 264, 340
Psp124BI GAGCTC 1 cut(s) 140
Psp1406I AACGTT 2 cut(s) 111, 515
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 352
RsaI GTAC 3 cut(s) 276, 325, 450
RsaNI GTAC 3 cut(s) 275, 324, 449
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 2 cut(s) 263, 339
Sau96I GGNCC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 118, 224, 460
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 120
Sse9I AATT 3 cut(s) 171, 520, 546
SsiI CCGC 1 cut(s) 160
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 116, 222, 458
TaaI ACNGT 2 cut(s) 97, 448
TaiI ACGT 2 cut(s) 114, 518
TaqI TCGA 2 cut(s) 106, 531
TasI AATT 3 cut(s) 171, 520, 546
TatI WGTACW 1 cut(s) 448
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 262, 338
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 395
TspRI CASTG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.