Rroxscaffold_2G00081210
ERF Family

heavy metal transport detoxification superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
4191260 .. 4192669
1410 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00081210.1

Sequence Viewer

Length: 555 bp
ATGGCTACCATTTCAGTCTTACCATTCTCACCTCTCCACCCAATCCCTACCCTCACTCATTCCCATTCCCTCTCCATTCCCATTCCTCCTCCCACCGTTTCGTTTCGAAACGTTTCCGCGTCCTTCGAGCTTTTCACTTCACTCAGGAACACCAGCTCCCGCAGACCCACAATTCTGAGGTCAGCCGAGGAAGAAACCCCTGTTCCGGCCGAAGAACCAGTCCCGGAAAAAGAAGAAGAAGAAGAAGGTAGTGCCGAGCAGCCTGTTTCGGTACCCGTTTCGCCCTCCGACACTCTCACCATGTTTTTTCAGGCTGATGGTACATTGAGTGATGCTGCTGTGCCTGCAGTGACCAAAGCCTTAGAGGCAACTGAAGGGATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAGTTGTTGAGTTGAAAAAGCAGACAACAGTACAAGCTACTGGGGTGGCTTCCAGTTTGGTTGAGGCCATACAGAGTTCGGGGTTTAAGCTACAAACGTTGAACTTGAGTTTTGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.69

Weight (kDa)

4.5

Isoelectric Point (pI)

69.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013272)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 271
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 117, 160
AclI AACGTT 2 cut(s) 111, 512
AcoI YGGCCR 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 273, 322, 447
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 4 cut(s) 391, 398, 430, 517
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 130, 156, 452, 505
AluI AGCT 4 cut(s) 130, 156, 452, 505
AoxI GGCC 2 cut(s) 207, 480
ApeKI GCWGC 2 cut(s) 259, 335
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 1 cut(s) 112
Asp718I GGTACC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 21, 289
AsuII TTCGAA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 271, 322
BccI CCATC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 2 cut(s) 260, 336
BlsI GCNGC 2 cut(s) 261, 337
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 541
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 3 cut(s) 218, 460, 468
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 157, 167
BseNI ACTGG 3 cut(s) 218, 460, 468
BseRI GAGGAG 1 cut(s) 78
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 271, 322
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 209, 482
BshNI GGYRCC 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 206, 224
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 209, 482
Bsp119I TTCGAA 1 cut(s) 106
BspACI CCGC 2 cut(s) 117, 160
BspANI GGCC 2 cut(s) 209, 482
BspCNI CTCAG 2 cut(s) 156, 168
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 349
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 271
BsrI ACTGG 3 cut(s) 218, 460, 468
BssECI CCNNGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 97, 445
Bst6I CTCTTC 1 cut(s) 531
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 3 cut(s) 143, 176, 361
BstFNI CGCG 1 cut(s) 119
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 344, 365
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 271, 322
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 2 cut(s) 209, 482
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 403
CseI GACGC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 272, 321, 446
CviAII CATG 2 cut(s) 301, 404
CviQI GTAC 3 cut(s) 272, 321, 446
DdeI CTNAG 3 cut(s) 143, 176, 361
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EclXI CGGCCG 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 393
FaeI CATG 2 cut(s) 304, 407
FaiI YATR 4 cut(s) 302, 405, 485, 553
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 300, 403
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 260, 336
Fsp4HI GCNGC 2 cut(s) 260, 336
GluI GCNGC 2 cut(s) 260, 336
HaeIII GGCC 2 cut(s) 209, 482
HapII CCGG 2 cut(s) 206, 224
HgaI GACGC 1 cut(s) 108
Hin1II CATG 2 cut(s) 304, 407
HpaII CCGG 2 cut(s) 206, 224
HphI GGTGA 2 cut(s) 21, 289
Hpy188I TCNGA 2 cut(s) 177, 289
Hpy188III TCNNGA 2 cut(s) 145, 404
HpyAV CCTTC 4 cut(s) 133, 239, 368, 385
HpyCH4III ACNGT 2 cut(s) 97, 445
HpyCH4IV ACGT 2 cut(s) 111, 512
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 365
HpyF3I CTNAG 3 cut(s) 143, 176, 361
HpySE526I ACGT 2 cut(s) 111, 512
Hsp92II CATG 2 cut(s) 304, 407
KpnI GGTACC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 271, 322
LweI GCATC 1 cut(s) 322
MaeII ACGT 2 cut(s) 111, 512
MaeIII GTNAC 1 cut(s) 349
MboII GAAGA 8 cut(s) 203, 224, 245, 248, 251, 254, 545, 548
MluCI AATT 2 cut(s) 171, 543
MmeI TCCRAC 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 1 cut(s) 501
MspI CCGG 2 cut(s) 206, 224
MspR9I CCNGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 344, 365
NciI CCSGG 1 cut(s) 224
NlaIII CATG 2 cut(s) 304, 407
NlaIV GGNNCC 1 cut(s) 273
NmeAIII GCCGAG 2 cut(s) 211, 280
NmuCI GTSAC 1 cut(s) 349
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 261, 337
Psp1406I AACGTT 2 cut(s) 111, 512
PspN4I GGNNCC 1 cut(s) 273
PstI CTGCAG 1 cut(s) 349
RsaI GTAC 3 cut(s) 273, 322, 447
RsaNI GTAC 3 cut(s) 272, 321, 446
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 2 cut(s) 260, 336
ScrFI CCNGG 1 cut(s) 224
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
Sse9I AATT 2 cut(s) 171, 543
SsiI CCGC 2 cut(s) 117, 160
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 97, 445
TaiI ACGT 2 cut(s) 114, 515
TaqI TCGA 2 cut(s) 106, 126
TasI AATT 2 cut(s) 171, 543
TatI WGTACW 1 cut(s) 445
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 259, 335
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.