RLG00000021965
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013272
Physical Location & Seq
Reverse (-)
79598434 .. 79599625
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021965

Sequence Viewer

Length: 564 bp
ATGGCTACGATTTCAGTCTCACCATTCTCACCTCTCCACCCAATCCCTACCCTCACTCATTCCCATTCCCTCTCCATTCCCATTCCTTCTCCCACCGTTTCGTTTCGAAACGTTTCCGCGTCCTTCAAGCTTTTGAGCTCTCTCAGGAACACCACCTCCCGCAGACCCACAATTCTGAGGTCAGCCGAGGAAGAAACGCCTGTTCCGGCCGAAGAACCAGTCCCGGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGGTAGTGCTGAGCAGCCCGTTTCGGTACCCGTTTCGCCCTCCGACACTCTCACCATGTTTTTTCAGGCTGATGGTACATTGAGTGATGCTGCTGTGCCTGCAGTGACCAAAGCCTTAGAGGAAACTGAAGGGATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAGTTGTTGAGTTGAAAAAGCAGACAACAGTACAAGCTACTGGGGTGGCTTCCAGTTTGGTTGAGGCCATACAGAGTTCGGGGTTTAAGCTACAAACTTTGAATTTGAGTTTCGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.07

Weight (kDa)

4.47

Isoelectric Point (pI)

76.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14910 AT5G14910
fragaria_vesca FvH4_6g50270
malus_domestica MD17G1039100.v1.1
prunus_persica Prupe.3G279900_v2.0.a1
pyrus_communis pycom17g03530
rosa_chinensis RchiOBHm_Chr2g0170541 RchiOBHm_Chr2g0170581
rosa_laevigata RLG00000021965
rosa_multiflora Rmu_sc0003787.1_g000037
rosa_roxburghii Rroxscaffold_2G00081210
rosa_rugosa Rorug02G0549700 Rorug02G0549700
rosa_samantha Rh2AG621600 Rh2BG633000 Rh2CG602300 Rh2DG645800
rosa_wichuraiana Rw2G051540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 117, 160
AclI AACGTT 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 3 cut(s) 282, 331, 456
AgsI TTSAA 5 cut(s) 127, 400, 407, 439, 526
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 130, 138, 461, 514
AluI AGCT 4 cut(s) 130, 138, 461, 514
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 2 cut(s) 207, 489
ApeKI GCWGC 2 cut(s) 268, 344
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 1 cut(s) 112
Asp718I GGTACC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 12, 21, 298
AsuII TTCGAA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 280, 331
BccI CCATC 1 cut(s) 320
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 269, 345
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 2 cut(s) 270, 346
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 3 cut(s) 218, 469, 477
BseDI CCNNGG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 157, 167, 255
BseNI ACTGG 3 cut(s) 218, 469, 477
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 280, 331
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 209, 491
BshNI GGYRCC 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 206, 224
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 209, 491
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 140
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 2 cut(s) 117, 160
BspANI GGCC 2 cut(s) 209, 491
BspCNI CTCAG 3 cut(s) 156, 168, 256
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 3 cut(s) 218, 469, 477
BssECI CCNNGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 97, 454
Bst6I CTCTTC 1 cut(s) 540
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 4 cut(s) 143, 176, 264, 370
BstFNI CGCG 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 280, 331
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 2 cut(s) 209, 491
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 412
CseI GACGC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 281, 330, 455
CviAII CATG 2 cut(s) 310, 413
CviQI GTAC 3 cut(s) 281, 330, 455
DdeI CTNAG 4 cut(s) 143, 176, 264, 370
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 140
Eco52I CGGCCG 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 2 cut(s) 313, 416
FaiI YATR 4 cut(s) 311, 414, 494, 562
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 309, 412
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 269, 345
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 269, 345
GluI GCNGC 2 cut(s) 269, 345
HaeIII GGCC 2 cut(s) 209, 491
HapII CCGG 2 cut(s) 206, 224
HgaI GACGC 1 cut(s) 108
Hin1II CATG 2 cut(s) 313, 416
HindIII AAGCTT 1 cut(s) 128
HpaII CCGG 2 cut(s) 206, 224
HphI GGTGA 3 cut(s) 12, 21, 298
Hpy188I TCNGA 2 cut(s) 177, 298
Hpy188III TCNNGA 2 cut(s) 145, 413
HpyAV CCTTC 5 cut(s) 96, 133, 248, 377, 394
HpyCH4III ACNGT 2 cut(s) 97, 454
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 4 cut(s) 143, 176, 264, 370
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 2 cut(s) 313, 416
KpnI GGTACC 1 cut(s) 284
LpnPI CCDG 9 cut(s) 130, 213, 219, 231, 237, 305, 366, 450, 490
Lsp1109I GCAGC 2 cut(s) 280, 331
LweI GCATC 1 cut(s) 331
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 3 cut(s) 171, 526, 552
MmeI TCCRAC 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 1 cut(s) 510
MspI CCGG 2 cut(s) 206, 224
MspR9I CCNGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 1 cut(s) 224
NlaIII CATG 2 cut(s) 313, 416
NlaIV GGNNCC 1 cut(s) 282
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 358
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 270, 346
Psp124BI GAGCTC 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 282
PstI CTGCAG 1 cut(s) 358
RsaI GTAC 3 cut(s) 282, 331, 456
RsaNI GTAC 3 cut(s) 281, 330, 455
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 2 cut(s) 269, 345
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 106
Sse9I AATT 3 cut(s) 171, 526, 552
SsiI CCGC 2 cut(s) 117, 160
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 97, 454
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 106, 537
TasI AATT 3 cut(s) 171, 526, 552
TatI WGTACW 1 cut(s) 454
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 268, 344
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 401
TspRI CASTG 1 cut(s) 363
XapI RAATTY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.