Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Forward (+)

1535820 .. 1540996

Gene Structure 5177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATGCCAGCCAAATCTAAAGATGAAGATCCAAAATTAAAACCAGGAGTCCAGATTGTTTTGCAATCAACTATACAACCTTGGTGGCATGGAGTGGGAAATAGTTTTTCTTTTGGTGAAAGTGCTGTAGCATCATCTTTGGCAGAACGTGGTAACAGTGTTGTGATGAATGGAGCTATGCAGTCACATTCAAGCAACTTCAACAAAGATGTACAGACTACAATAGGATCACAGTCTGATGGGAATAGTGGACGTGAAAACCAACAAATGAAAAGCACTTCATCTGCATCGGCTGCTAAATTGGGTGAACATCTTGATGCCAATTCACAAATGGAACTTGTTGGCCACTCAATTGTTTTGACATCATATCCATATCCAGATCCACAATACGGAGGGATGTTGACTCATTATGGGCCACGAGCTATGGTGCCCCCTCAATTCTATGGCTTGCACCATGGCAGAATGCCCTTGCCTCTTGAAATGGAAGAGGAACCTGTTTATGTAAATGCCAAGCAGTACCATGGTATTTTGAGACGAAGACAGTCACGTGCCAAAGCTGAGCTAGAAAGGAAGCTTATAAAAGTTAGGAAGCCATATCTTCACGAATCTCGTCACCAGCATGCCTTGAGGAGAGCAAGGGGTTGTGGAGGCCGTTTCCTCAATACAAAGAAGCAAGATGGCAGTGATGCAAATTCCTCATTAGAAAAATCCATTAATTTGGATGCAAACTTTTCACCGAAATCTGCCAAATCTGGTTTTGAGTGCTTTCCCAATGATAGTAATGGAAATTTTGTTTCCTCCAATGTCCAGCAAGAAGGATCAGGTTCATGGTTCAGGACACTCAATAACCACACACTCACCCATGGTAATGGCAATGGCCATGGCCCCTCATCGGCATATCGTACAACATTTGGTAACGGTACGAAAGGTGTTTTCCTTGGTGAACAGAAGGAAACAATGCAGGTGAATGGATCCTCACATGGGGCCATTCACAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

334

Amino Acids

36.46

Weight (kDa)

9.46

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	164 - 219	1.3e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AarI	CACCTGC	1 cut(s)	952
Acc36I	ACCTGC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	427
AclWI	GGATC	6 cut(s)	23, 235, 374, 826, 966, 979
AcoI	YGGCCR	2 cut(s)	343, 877
AcsI	RAATTY	2 cut(s)	691, 787
AcvI	CACGTG	1 cut(s)	548
AfaI	GTAC	4 cut(s)	213, 518, 904, 922
AfiI	CCNNNNNNNGG	3 cut(s)	389, 892, 981
AgsI	TTSAA	3 cut(s)	192, 202, 479
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	5 cut(s)	176, 422, 557, 562, 574
AluI	AGCT	5 cut(s)	176, 422, 557, 562, 574
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	6 cut(s)	23, 235, 374, 826, 966, 979
AoxI	GGCC	6 cut(s)	343, 413, 649, 877, 883, 984
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	691, 787
AseI	ATTAAT	1 cut(s)	714
AspS9I	GGNCC	3 cut(s)	413, 884, 984
AsuHPI	GGTGA	7 cut(s)	128, 317, 605, 726, 850, 953, 976
BaeGI	GKGCMC	1 cut(s)	432
BalI	TGGCCA	2 cut(s)	345, 879
BamHI	GGATCC	1 cut(s)	971
BanI	GGYRCC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	417
BbrPI	CACGTG	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	544
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	233, 671
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	952
BisI	GCNGC	1 cut(s)	294
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	45
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	413, 884, 984
BmiI	GGNNCC	5 cut(s)	429, 492, 886, 973, 985
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	5 cut(s)	140, 296, 307, 676, 712
BpiI	GAAGAC	1 cut(s)	544
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	646
BsaAI	YACGTR	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	6 cut(s)	80, 454, 520, 862, 880, 937
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 892, 981
Bse3DI	GCAATG	1 cut(s)	880
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	6 cut(s)	80, 454, 520, 862, 880, 937
BseGI	GGATG	2 cut(s)	402, 727
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	389, 892, 981
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	643
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	6 cut(s)	345, 415, 651, 879, 885, 986
BshNI	GGYRCC	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	389, 892, 981
BsmAI	GTCTC	1 cut(s)	526
BsmBI	CGTCTC	1 cut(s)	526
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	6 cut(s)	345, 415, 651, 879, 885, 986
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	5 cut(s)	28, 227, 379, 818, 971
Bsp1720I	GCTNAGC	1 cut(s)	558
Bsp19I	CCATGG	4 cut(s)	454, 520, 862, 880
BspANI	GGCC	6 cut(s)	345, 415, 651, 879, 885, 986
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	5 cut(s)	429, 492, 886, 973, 985
BspMI	ACCTGC	1 cut(s)	952
BspPI	GGATC	6 cut(s)	23, 235, 374, 826, 966, 979
BspT107I	GGYRCC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	880
BsrGI	TGTACA	1 cut(s)	211
BssECI	CCNNGG	6 cut(s)	80, 454, 520, 862, 880, 937
BssMI	GATC	5 cut(s)	28, 227, 379, 818, 971
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	6 cut(s)	80, 454, 520, 862, 880, 937
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	5 cut(s)	158, 234, 543, 920, 995
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	211
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	9, 449, 621
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	4 cut(s)	454, 520, 862, 880
BstF5I	GGATG	2 cut(s)	402, 727
BstKTI	GATC	5 cut(s)	31, 230, 382, 821, 974
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	5 cut(s)	28, 227, 379, 818, 971
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	3 cut(s)	28, 379, 971
BstXI	CCANNNNNNTGG	2 cut(s)	718, 869
BstYI	RGATCY	3 cut(s)	28, 379, 971
BsuRI	GGCC	6 cut(s)	345, 415, 651, 879, 885, 986
BtgI	CCRYGG	4 cut(s)	454, 520, 862, 880
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	402, 727
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	2 cut(s)	163, 688
BveI	ACCTGC	1 cut(s)	952
Cac8I	GCNNGC	3 cut(s)	9, 449, 621
Cfr13I	GGNCC	3 cut(s)	413, 884, 984
Csp6I	GTAC	4 cut(s)	212, 517, 903, 921
CspCI	CAANNNNNGTGG	2 cut(s)	65, 100
CviAII	CATG	8 cut(s)	89, 455, 521, 620, 828, 863, 881, 980
CviQI	GTAC	4 cut(s)	212, 517, 903, 921
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	5 cut(s)	30, 229, 381, 820, 973
DpnII	GATC	5 cut(s)	28, 227, 379, 818, 971
EaeI	YGGCCR	2 cut(s)	343, 877
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	6 cut(s)	80, 454, 520, 862, 880, 937
Eco72I	CACGTG	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	6 cut(s)	80, 454, 520, 862, 880, 937
ErhI	CCWWGG	6 cut(s)	80, 454, 520, 862, 880, 937
Esp3I	CGTCTC	1 cut(s)	526
FaeI	CATG	8 cut(s)	92, 458, 524, 623, 831, 866, 884, 983
FatI	CATG	8 cut(s)	88, 454, 520, 619, 827, 862, 880, 979
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	2 cut(s)	409, 734
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	6 cut(s)	345, 415, 651, 879, 885, 986
Hin1II	CATG	8 cut(s)	92, 458, 524, 623, 831, 866, 884, 983
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	3 cut(s)	48, 403, 605
HphI	GGTGA	7 cut(s)	128, 317, 605, 726, 850, 953, 976
Hpy166II	GTNNAC	4 cut(s)	251, 308, 402, 944
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	6 cut(s)	52, 314, 377, 476, 602, 835
Hpy8I	GTNNAC	4 cut(s)	251, 308, 402, 944
HpyAV	CCTTC	2 cut(s)	809, 943
HpyCH4III	ACNGT	5 cut(s)	158, 234, 543, 920, 995
HpyCH4IV	ACGT	3 cut(s)	148, 253, 547
HpyCH4V	TGCA	7 cut(s)	64, 181, 287, 451, 689, 725, 961
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	3 cut(s)	148, 253, 547
Hsp92II	CATG	8 cut(s)	92, 458, 524, 623, 831, 866, 884, 983
Kzo9I	GATC	5 cut(s)	28, 227, 379, 818, 971
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	5 cut(s)	140, 296, 307, 676, 712
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	3 cut(s)	148, 253, 547
MaeIII	GTNAC	5 cut(s)	152, 183, 543, 611, 914
MalI	GATC	5 cut(s)	30, 229, 381, 820, 973
MboI	GATC	5 cut(s)	28, 227, 379, 818, 971
MboII	GAAGA	4 cut(s)	38, 497, 549, 590
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	3 cut(s)	28, 379, 971
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	2 cut(s)	345, 879
MluCI	AATT	8 cut(s)	35, 299, 322, 351, 437, 691, 715, 787
MluNI	TGGCCA	2 cut(s)	345, 879
MlyI	GAGTC	2 cut(s)	57, 397
Mox20I	TGGCCA	2 cut(s)	345, 879
MscI	TGGCCA	2 cut(s)	345, 879
MseI	TTAA	2 cut(s)	38, 714
MslI	CAYNNNNRTG	3 cut(s)	315, 618, 867
Msp20I	TGGCCA	2 cut(s)	345, 879
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	4 cut(s)	454, 520, 862, 880
NdeII	GATC	5 cut(s)	28, 227, 379, 818, 971
NlaIII	CATG	8 cut(s)	92, 458, 524, 623, 831, 866, 884, 983
NlaIV	GGNNCC	5 cut(s)	429, 492, 886, 973, 985
NmuCI	GTSAC	3 cut(s)	183, 543, 611
NspI	RCATGY	1 cut(s)	623
PaeI	GCATGC	1 cut(s)	623
PaqCI	CACCTGC	1 cut(s)	952
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	56, 397
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	2 cut(s)	56, 397
Ppu21I	YACGTR	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	5 cut(s)	429, 492, 886, 973, 985
PspPI	GGNCC	3 cut(s)	413, 884, 984
PsuI	RGATCY	3 cut(s)	28, 379, 971
RsaI	GTAC	4 cut(s)	213, 518, 904, 922
RsaNI	GTAC	4 cut(s)	212, 517, 903, 921
RseI	CAYNNNNRTG	3 cut(s)	315, 618, 867
SaqAI	TTAA	2 cut(s)	38, 714
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	5 cut(s)	28, 227, 379, 818, 971
Sau96I	GGNCC	3 cut(s)	413, 884, 984
SchI	GAGTC	2 cut(s)	57, 397
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	5 cut(s)	140, 296, 307, 676, 712
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	3 cut(s)	315, 618, 867
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	8 cut(s)	35, 299, 322, 351, 437, 691, 715, 787
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	6 cut(s)	80, 454, 520, 862, 880, 937
TaaI	ACNGT	5 cut(s)	158, 234, 543, 920, 995
TaiI	ACGT	3 cut(s)	151, 256, 550
TasI	AATT	8 cut(s)	35, 299, 322, 351, 437, 691, 715, 787
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	2 cut(s)	38, 714
Tru9I	TTAA	2 cut(s)	38, 714
TscAI	CASTG	2 cut(s)	163, 688
TseFI	GTSAC	3 cut(s)	183, 543, 611
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	3 cut(s)	183, 543, 611
TspDTI	ATGAA	5 cut(s)	39, 182, 270, 284, 816
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	2 cut(s)	163, 688
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	2 cut(s)	691, 787
XceI	RCATGY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.