Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Reverse (-)

36538789 .. 36544223

Gene Structure 5435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1309800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTGGATCATAGTAGTAGTATGGTCATGAATGGAGCTATGCAGGCACAAACTAATGCTAGGCTGGATGGTCGGGCCAACTTCAATAAAGAATTTCGGACTACAGTAGAATCACAGTCTGATGGGAATAGTGGAAGTGAAAACCAACATACCAAAAGCGTTTCGTCCTCAGTGGTTCCTGCAATGGGTCAACACGTGGATCCAAACTCACAAATGGAACTTGTTGGCCACTCAATTGTTATGTCATCGTATCCGTATGCAGATCCACAATATGGTGGGATGCTGACTCCTTATGGGCCACAAACTATGTTGCCTCCCCACTTCTATGGTATGCATCCTGGTAGAATGCCTTTGCCTCCTGATATGGAAGAGGAGCCTGTGTATGTAAATGCCAAGCAGTACCATGGTATTTTGAGAAGAAGACAGTCACGTGCTAAAGCTGAGCTTGAAAAGAAACTTATAAAAGCTCGAAAGCCATATCTTCATGAGTCTCGACACCTGCATGCATTAAGGAGGGCAAGGGGGTGTGGAGGTCGCTTCCTTAATAAAAAGAAACAAGATGATAACGACGAAAATTCCTCACTAGAAAAGGGCATGAATTATGATGGAAACCATTCAGCTGAATCTGCCAAATCTGGTTTTGAGTGCTGTCCAAATACCAGCAATGGGAATTTTGATTCCTCAAATGTCCAGCAAGACAGATCAGGTCAATGGCTCAGGACACACAGCCACCACACACACTCTAATGGTAATGGCAATGGTCATGGCCCATCATCAGCATACCCTTCCACGTTTGGTGACAGCAAGGAAAGTGTGTTCCTGGGTCAACAGAGGGAAAACATGCAGTTGAATGGGTTGTCTCGCGGCGCCATCCCCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

295

Amino Acids

32.54

Weight (kDa)

8.87

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	125 - 180	5.7e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AarI	CACCTGC	1 cut(s)	507
Acc36I	ACCTGC	1 cut(s)	507
AccB1I	GGYRCC	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccII	CGCG	1 cut(s)	864
AciI	CCGC	1 cut(s)	864
AclWI	GGATC	4 cut(s)	15, 194, 207, 257
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	92, 574, 670
AcvI	CACGTG	2 cut(s)	196, 431
AcyI	GRCGYC	1 cut(s)	867
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	3 cut(s)	185, 272, 666
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	85, 449, 850
AjnI	CCWGG	2 cut(s)	337, 819
AloI	GAACNNNNNNTCC	2 cut(s)	800, 832
AluBI	AGCT	5 cut(s)	38, 440, 445, 467, 620
AluI	AGCT	5 cut(s)	38, 440, 445, 467, 620
Alw26I	GTCTC	2 cut(s)	495, 864
AlwI	GGATC	4 cut(s)	15, 194, 207, 257
AoxI	GGCC	4 cut(s)	75, 226, 296, 766
ApoI	RAATTY	3 cut(s)	92, 574, 670
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	869
AspS9I	GGNCC	3 cut(s)	75, 296, 767
AsuHPI	GGTGA	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	866
BbrPI	CACGTG	2 cut(s)	196, 431
BbsI	GAAGAC	1 cut(s)	427
BccI	CCATC	5 cut(s)	62, 116, 599, 778, 878
BciT130I	CCWGG	2 cut(s)	339, 821
BciVI	GTATCC	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	495, 864
BfaI	CTAG	2 cut(s)	60, 584
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	865
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	866
Bme1390I	CCNGG	2 cut(s)	339, 821
BmgT120I	GGNCC	3 cut(s)	75, 296, 767
BmiI	GGNNCC	4 cut(s)	177, 201, 375, 868
BmrFI	CCNGG	2 cut(s)	339, 821
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	2 cut(s)	270, 343
BmuI	ACTGGG	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	716
Bpu1102I	GCTNAGC	1 cut(s)	441
BsaAI	YACGTR	2 cut(s)	196, 431
BsaHI	GRCGYC	1 cut(s)	867
BsaJI	CCNNGG	2 cut(s)	403, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 272, 666
Bse1I	ACTGG	1 cut(s)	876
Bse3DI	GCAATG	3 cut(s)	189, 670, 763
BseBI	CCWGG	2 cut(s)	339, 821
BseDI	CCNNGG	2 cut(s)	403, 820
BseGI	GGATG	4 cut(s)	73, 285, 334, 870
BseLI	CCNNNNNNNGG	3 cut(s)	185, 272, 666
BseMI	GCAATG	3 cut(s)	189, 670, 763
BseMII	CTCAG	3 cut(s)	183, 432, 730
BseNI	ACTGG	1 cut(s)	876
BseRI	GAGGAG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	864
BshFI	GGCC	4 cut(s)	77, 228, 298, 768
BshNI	GGYRCC	1 cut(s)	866
BslI	CCNNNNNNNGG	3 cut(s)	185, 272, 666
BsmAI	GTCTC	2 cut(s)	495, 864
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	4 cut(s)	77, 228, 298, 768
Bsp143I	GATC	4 cut(s)	7, 199, 262, 701
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	1 cut(s)	864
BspANI	GGCC	4 cut(s)	77, 228, 298, 768
BspCNI	CTCAG	3 cut(s)	182, 433, 729
BspFNI	CGCG	1 cut(s)	864
BspHI	TCATGA	2 cut(s)	27, 484
BspLI	GGNNCC	4 cut(s)	177, 201, 375, 868
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	4 cut(s)	15, 194, 207, 257
BspT107I	GGYRCC	1 cut(s)	866
BsrDI	GCAATG	3 cut(s)	189, 670, 763
BsrI	ACTGG	1 cut(s)	876
BssECI	CCNNGG	2 cut(s)	403, 820
BssMI	GATC	4 cut(s)	7, 199, 262, 701
BssNI	GRCGYC	1 cut(s)	867
BssT1I	CCWWGG	1 cut(s)	403
Bst2UI	CCWGG	2 cut(s)	339, 821
Bst4CI	ACNGT	3 cut(s)	106, 117, 426
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	867
BstBAI	YACGTR	2 cut(s)	196, 431
BstC8I	GCNNGC	2 cut(s)	45, 504
BstDEI	CTNAG	3 cut(s)	169, 441, 716
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	4 cut(s)	73, 285, 334, 870
BstFNI	CGCG	1 cut(s)	864
BstH2I	RGCGCY	1 cut(s)	870
BstHHI	GCGC	1 cut(s)	869
BstKTI	GATC	4 cut(s)	10, 202, 265, 704
BstMAI	GTCTC	2 cut(s)	495, 864
BstMBI	GATC	4 cut(s)	7, 199, 262, 701
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 626
BstNI	CCWGG	2 cut(s)	339, 821
BstNSI	RCATGY	2 cut(s)	506, 844
BstSCI	CCNGG	2 cut(s)	337, 819
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	864
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	2 cut(s)	199, 262
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	2 cut(s)	199, 262
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	4 cut(s)	77, 228, 298, 768
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	4 cut(s)	73, 285, 334, 870
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	2 cut(s)	45, 504
CciI	TCATGA	2 cut(s)	27, 484
CfoI	GCGC	1 cut(s)	869
Cfr13I	GGNCC	3 cut(s)	75, 296, 767
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	7 cut(s)	28, 404, 485, 503, 595, 764, 841
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	3 cut(s)	169, 441, 716
DinI	GGCGCC	1 cut(s)	868
DpnI	GATC	4 cut(s)	9, 201, 264, 703
DpnII	GATC	4 cut(s)	7, 199, 262, 701
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	403
Eco72I	CACGTG	2 cut(s)	196, 431
EcoRII	CCWGG	2 cut(s)	337, 819
EcoT14I	CCWWGG	1 cut(s)	403
EcoT22I	ATGCAT	2 cut(s)	336, 508
EgeI	GGCGCC	1 cut(s)	868
EheI	GGCGCC	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	7 cut(s)	31, 407, 488, 506, 598, 767, 844
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	7 cut(s)	27, 403, 484, 502, 594, 763, 840
Fnu4HI	GCNGC	1 cut(s)	865
FokI	GGATG	4 cut(s)	80, 292, 321, 857
Fsp4HI	GCNGC	1 cut(s)	865
FspBI	CTAG	2 cut(s)	60, 584
GlaI	GCGC	1 cut(s)	868
GluI	GCNGC	1 cut(s)	865
HaeII	RGCGCY	1 cut(s)	870
HaeIII	GGCC	4 cut(s)	77, 228, 298, 768
HhaI	GCGC	1 cut(s)	869
Hin1I	GRCGYC	1 cut(s)	867
Hin1II	CATG	7 cut(s)	31, 407, 488, 506, 598, 767, 844
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HincII	GTYRAC	2 cut(s)	191, 827
HindII	GTYRAC	2 cut(s)	191, 827
HinfI	GANTC	5 cut(s)	110, 286, 488, 623, 677
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	2 cut(s)	191, 827
Hpy188I	TCNGA	2 cut(s)	99, 121
Hpy188III	TCNNGA	5 cut(s)	28, 359, 485, 492, 718
Hpy8I	GTNNAC	2 cut(s)	191, 827
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	1 cut(s)	795
HpyCH4III	ACNGT	3 cut(s)	106, 117, 426
HpyCH4IV	ACGT	3 cut(s)	195, 430, 791
HpyCH4V	TGCA	7 cut(s)	43, 182, 260, 334, 502, 506, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 626
HpyF3I	CTNAG	3 cut(s)	169, 441, 716
HpySE526I	ACGT	3 cut(s)	195, 430, 791
Hsp92I	GRCGYC	1 cut(s)	867
Hsp92II	CATG	7 cut(s)	31, 407, 488, 506, 598, 767, 844
HspAI	GCGC	1 cut(s)	867
KasI	GGCGCC	1 cut(s)	866
Kzo9I	GATC	4 cut(s)	7, 199, 262, 701
LmnI	GCTCC	2 cut(s)	35, 373
LweI	GCATC	2 cut(s)	270, 343
MaeI	CTAG	2 cut(s)	60, 584
MaeII	ACGT	3 cut(s)	195, 430, 791
MaeIII	GTNAC	2 cut(s)	426, 797
MalI	GATC	4 cut(s)	9, 201, 264, 703
MboI	GATC	4 cut(s)	7, 199, 262, 701
MboII	GAAGA	4 cut(s)	380, 429, 432, 473
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	2 cut(s)	199, 262
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	5 cut(s)	92, 234, 574, 598, 670
MluNI	TGGCCA	1 cut(s)	228
Mly113I	GGCGCC	1 cut(s)	867
MlyI	GAGTC	2 cut(s)	280, 497
MnlI	CCTC	9 cut(s)	178, 324, 364, 366, 507, 524, 589, 691, 825
Mox20I	TGGCCA	1 cut(s)	228
Mph1103I	ATGCAT	2 cut(s)	336, 508
MroXI	GAANNNNTTC	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	2 cut(s)	509, 543
MslI	CAYNNNNRTG	3 cut(s)	324, 501, 744
Msp20I	TGGCCA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	339, 821
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	2 cut(s)	339, 821
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	2 cut(s)	44, 626
NarI	GGCGCC	1 cut(s)	867
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	4 cut(s)	7, 199, 262, 701
NlaIII	CATG	7 cut(s)	31, 407, 488, 506, 598, 767, 844
NlaIV	GGNNCC	4 cut(s)	177, 201, 375, 868
NmuCI	GTSAC	2 cut(s)	426, 797
NsiI	ATGCAT	2 cut(s)	336, 508
NspI	RCATGY	2 cut(s)	506, 844
PaeI	GCATGC	1 cut(s)	506
PagI	TCATGA	2 cut(s)	27, 484
PaqCI	CACCTGC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	110, 623, 677
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	866
PleI	GAGTC	2 cut(s)	280, 496
PluTI	GGCGCC	1 cut(s)	870
PmaCI	CACGTG	2 cut(s)	196, 431
PmlI	CACGTG	2 cut(s)	196, 431
PpsI	GAGTC	2 cut(s)	280, 496
Ppu21I	YACGTR	2 cut(s)	196, 431
PsiI	TTATAA	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	337, 819
PspCI	CACGTG	2 cut(s)	196, 431
PspGI	CCWGG	2 cut(s)	337, 819
PspN4I	GGNNCC	4 cut(s)	177, 201, 375, 868
PspPI	GGNCC	3 cut(s)	75, 296, 767
PsuI	RGATCY	2 cut(s)	199, 262
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	3 cut(s)	324, 501, 744
SaqAI	TTAA	2 cut(s)	509, 543
SatI	GCNGC	1 cut(s)	865
Sau3AI	GATC	4 cut(s)	7, 199, 262, 701
Sau96I	GGNCC	3 cut(s)	75, 296, 767
SchI	GAGTC	2 cut(s)	280, 497
ScrFI	CCNGG	2 cut(s)	339, 821
SfaNI	GCATC	2 cut(s)	270, 343
SfcI	CTRYAG	1 cut(s)	102
SfoI	GGCGCC	1 cut(s)	868
SmiMI	CAYNNNNRTG	3 cut(s)	324, 501, 744
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	5 cut(s)	92, 234, 574, 598, 670
SsiI	CCGC	1 cut(s)	864
SspDI	GGCGCC	1 cut(s)	866
SspMI	CTAG	2 cut(s)	60, 584
StyD4I	CCNGG	2 cut(s)	337, 819
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	106, 117, 426
TaiI	ACGT	3 cut(s)	198, 433, 794
TaqI	TCGA	2 cut(s)	469, 493
TasI	AATT	5 cut(s)	92, 234, 574, 598, 670
TauI	GCSGC	1 cut(s)	867
TfiI	GAWTC	3 cut(s)	110, 623, 677
Tru1I	TTAA	2 cut(s)	509, 543
Tru9I	TTAA	2 cut(s)	509, 543
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	2 cut(s)	426, 797
Tsp45I	GTSAC	2 cut(s)	426, 797
TspDTI	ATGAA	3 cut(s)	44, 473, 611
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	272
XapI	RAATTY	3 cut(s)	92, 574, 670
XceI	RCATGY	2 cut(s)	506, 844
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	2 cut(s)	60, 584
Zsp2I	ATGCAT	2 cut(s)	336, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.