Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Reverse (-)

66011724 .. 66015850

Gene Structure 4127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCCAGCCAAATCTAAAGATGTAGATCCAGGAACCCAGACTGTGTTGCAATCAACTACACAACCTTGGTGGCGTGGAGCGGGAAATAGTTCGTCTTTTGGTGAAAGTGCTGTAGCATCATCTTTGGGGGAACATGGTAACCATGTTGTGATGAATGGCGCTATGCAGTCACAAGCTGATGCTGGAGCTAACTTCAACAAAGATGTGCAGACTACAATAGGATCACATTCTGATGGGAATAGTGGACATGAAAACCAACAAATGAAAAGCACTTCCTCTGCAGTGGTTGCTAAATTGGGTGAACATCTTGATGCGAATTCACAAATGGAACTTGTTGGTCACTCAATTGTTTTGACATCATATCCGTATTCAGATCCACAATACAGTGGGATGTTGACTCATTATCGGCCACAAGCTATGGTGCCCCCTCAATTCTATGGCTTTCATCATGGTAGAATGCCCTTGCCCCTTGAAATGGAAGAGGAGCCTGTTTATGTAAATGCCAAGCAATACCATGGTATTTTGAGACGAAGACAGTCACGTGCTAAAGCTGAGCTTGAAAGGAAGCTTATAAAAGTTAGGAAGCCATATCTTCATGAGTCTCGTCACCAGCATGCGTTGAGGAGAGCAAGGGGTTGTGGAGGCCGTTTCCTTAATACGAAGAAGCAAGATGATAGTGATGCAAATTCCTCATCAGAAAAAACCATTAATTTGGATGCAAACTTTTCACCCAAATCTGCCAAATCTGGTTTTGAGTGCTTTCCTAATGATAGCAATGCCAATTTCGTTTCCTCCAATGTCCAGCAAGAAGGATCAGGTTCATGGTTCAGGACACTCAATAACCACACACTCTCCATCGGTAATGGCAATGGCCATGCCCCGTCATCTACATATCGTACAACATTTAGTGACGGCACGGAAGGCGTTTTCCTTGGTCAGCAGAAGGAAACAATGCAGTTGAATGGATCCTCTCGTGGGGCCATTCACAGTGTTGCCGAAGGTGTGCACTCCAGCTTGGAAAAACCCTTCTTGTGCGATATCTATGTCAGGCAATTCATTCTTGGCTTTGGTTACTTTGTAATTATTGGGACGATACTACAGGAGATAGGTGATGGATTCCATGCTGTCTTCAGTCATAAACCGCTTCCACTCACCCCCTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

389

Amino Acids

42.52

Weight (kDa)

7.78

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	162 - 217	1.6e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	421
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	2 cut(s)	80, 1142
AclWI	GGATC	6 cut(s)	20, 229, 368, 820, 960, 973
AcoI	YGGCCR	2 cut(s)	407, 871
AcsI	RAATTY	2 cut(s)	316, 685
AcuI	CTGAAG	1 cut(s)	1114
AcvI	CACGTG	1 cut(s)	542
AfaI	GTAC	1 cut(s)	898
AfiI	CCNNNNNNNGG	2 cut(s)	475, 975
AgsI	TTSAA	4 cut(s)	196, 473, 560, 961
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	176, 188, 416, 551, 556, 568, 1014
AluI	AGCT	7 cut(s)	176, 188, 416, 551, 556, 568, 1014
Alw21I	GWGCWC	1 cut(s)	1008
Alw26I	GTCTC	2 cut(s)	520, 606
Alw44I	GTGCAC	1 cut(s)	1004
AlwI	GGATC	6 cut(s)	20, 229, 368, 820, 960, 973
AoxI	GGCC	4 cut(s)	407, 643, 871, 978
ApaLI	GTGCAC	1 cut(s)	1004
ApoI	RAATTY	2 cut(s)	316, 685
AseI	ATTAAT	1 cut(s)	708
Asp700I	GAANNNNTTC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	978
AsuHPI	GGTGA	6 cut(s)	113, 311, 599, 720, 1121, 1144
BaeGI	GKGCMC	2 cut(s)	426, 1008
BalI	TGGCCA	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	965
BanI	GGYRCC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	972
BbrPI	CACGTG	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	538, 1120
Bbv12I	GWGCWC	1 cut(s)	1008
BccI	CCATC	3 cut(s)	227, 863, 1106
BceAI	ACGGC	2 cut(s)	630, 928
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	520, 606
BfmI	CTRYAG	3 cut(s)	111, 279, 1097
BfoI	RGCGCY	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	978
BmiI	GGNNCC	5 cut(s)	34, 423, 486, 967, 979
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	5 cut(s)	125, 169, 301, 670, 706
BpiI	GAAGAC	2 cut(s)	538, 1120
BpmI	CTGGAG	2 cut(s)	204, 994
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	65, 514, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	836, 866
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 975
Bse3DI	GCAATG	2 cut(s)	781, 874
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	65, 514, 931
BseGI	GGATG	2 cut(s)	396, 721
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	475, 975
BseMI	GCAATG	2 cut(s)	781, 874
BseMII	CTCAG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	497, 637
BseSI	GKGCMC	2 cut(s)	426, 1008
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	4 cut(s)	409, 645, 873, 980
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	1008
BslFI	GGGAC	1 cut(s)	1102
BslI	CCNNNNNNNGG	2 cut(s)	475, 975
BsmAI	GTCTC	2 cut(s)	520, 606
BsmBI	CGTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	1102
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	4 cut(s)	409, 645, 873, 980
Bsp1286I	GDGCHC	2 cut(s)	426, 1008
Bsp143I	GATC	5 cut(s)	25, 221, 373, 812, 965
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	2 cut(s)	80, 1142
BspANI	GGCC	4 cut(s)	409, 645, 873, 980
BspCNI	CTCAG	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	5 cut(s)	34, 423, 486, 967, 979
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	6 cut(s)	20, 229, 368, 820, 960, 973
BspT107I	GGYRCC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	781, 874
BssECI	CCNNGG	3 cut(s)	65, 514, 931
BssMI	GATC	5 cut(s)	25, 221, 373, 812, 965
BssSI	CACGAG	1 cut(s)	972
BssT1I	CCWWGG	3 cut(s)	65, 514, 931
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	43, 386, 537, 989
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	6, 615
BstDEI	CTNAG	1 cut(s)	552
BstDSI	CCRYGG	1 cut(s)	514
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	396, 721
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	5 cut(s)	28, 224, 376, 815, 968
BstMAI	GTCTC	2 cut(s)	520, 606
BstMBI	GATC	5 cut(s)	25, 221, 373, 812, 965
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 921
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	3 cut(s)	111, 279, 1097
BstSLI	GKGCMC	2 cut(s)	426, 1008
BstV2I	GAAGAC	2 cut(s)	538, 1120
BstX2I	RGATCY	3 cut(s)	25, 373, 965
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	3 cut(s)	25, 373, 965
BsuRI	GGCC	4 cut(s)	409, 645, 873, 980
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	396, 721
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	288, 391, 994
Cac8I	GCNNGC	2 cut(s)	6, 615
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	978
Csp6I	GTAC	1 cut(s)	897
CspCI	CAANNNNNGTGG	2 cut(s)	50, 85
CviQI	GTAC	1 cut(s)	897
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	5 cut(s)	27, 223, 375, 814, 967
DpnII	GATC	5 cut(s)	25, 221, 373, 812, 965
EaeI	YGGCCR	2 cut(s)	407, 871
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	3 cut(s)	65, 514, 931
Eco32I	GATATC	1 cut(s)	1039
Eco57I	CTGAAG	1 cut(s)	1114
Eco72I	CACGTG	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	1039
EcoT14I	CCWWGG	3 cut(s)	65, 514, 931
ErhI	CCWWGG	3 cut(s)	65, 514, 931
Esp3I	CGTCTC	1 cut(s)	520
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	1 cut(s)	1102
FauI	CCCGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	403, 728
GlaI	GCGC	1 cut(s)	160
GsuI	CTGGAG	2 cut(s)	204, 994
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	409, 645, 873, 980
HhaI	GCGC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	3 cut(s)	397, 599, 1116
HphI	GGTGA	6 cut(s)	113, 311, 599, 720, 1121, 1144
Hpy166II	GTNNAC	4 cut(s)	245, 302, 396, 1006
Hpy188I	TCNGA	3 cut(s)	232, 373, 697
Hpy188III	TCNNGA	3 cut(s)	308, 596, 829
Hpy8I	GTNNAC	4 cut(s)	245, 302, 396, 1006
HpyAV	CCTTC	5 cut(s)	803, 914, 937, 992, 1036
HpyCH4III	ACNGT	4 cut(s)	43, 386, 537, 989
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	8 cut(s)	49, 166, 208, 281, 683, 719, 955, 1006
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 921
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	1 cut(s)	541
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	25, 221, 373, 812, 965
LmnI	GCTCC	3 cut(s)	77, 185, 484
LweI	GCATC	5 cut(s)	125, 169, 301, 670, 706
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	7 cut(s)	137, 168, 338, 537, 605, 908, 1070
MalI	GATC	5 cut(s)	27, 223, 375, 814, 967
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	5 cut(s)	25, 221, 373, 812, 965
MboII	GAAGA	5 cut(s)	491, 543, 584, 673, 1120
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	3 cut(s)	25, 373, 965
MhlI	GDGCHC	2 cut(s)	426, 1008
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	9 cut(s)	293, 316, 345, 431, 685, 709, 781, 1052, 1080
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	2 cut(s)	391, 608
MnlI	CCTC	8 cut(s)	286, 438, 475, 615, 635, 700, 802, 979
Mox20I	TGGCCA	1 cut(s)	873
MroXI	GAANNNNTTC	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	2 cut(s)	654, 708
MslI	CAYNNNNRTG	3 cut(s)	231, 309, 612
Msp20I	TGGCCA	1 cut(s)	873
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	287, 921
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	5 cut(s)	25, 221, 373, 812, 965
NlaIV	GGNNCC	5 cut(s)	34, 423, 486, 967, 979
NmuCI	GTSAC	5 cut(s)	168, 338, 537, 605, 908
NspI	RCATGY	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	617
PagI	TCATGA	1 cut(s)	595
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	1116
PfoI	TCCNGGA	1 cut(s)	28
PleI	GAGTC	2 cut(s)	391, 607
PmaCI	CACGTG	1 cut(s)	542
PmlI	CACGTG	1 cut(s)	542
PpsI	GAGTC	2 cut(s)	391, 607
Ppu21I	YACGTR	1 cut(s)	542
PshBI	ATTAAT	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	542
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	5 cut(s)	34, 423, 486, 967, 979
PspPI	GGNCC	1 cut(s)	978
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	25, 373, 965
RsaI	GTAC	1 cut(s)	898
RsaNI	GTAC	1 cut(s)	897
RseI	CAYNNNNRTG	3 cut(s)	231, 309, 612
SaqAI	TTAA	2 cut(s)	654, 708
Sau3AI	GATC	5 cut(s)	25, 221, 373, 812, 965
Sau96I	GGNCC	1 cut(s)	978
SchI	GAGTC	2 cut(s)	391, 608
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	426, 1008
SfaNI	GCATC	5 cut(s)	125, 169, 301, 670, 706
SfcI	CTRYAG	3 cut(s)	111, 279, 1097
SmiMI	CAYNNNNRTG	3 cut(s)	231, 309, 612
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	9 cut(s)	293, 316, 345, 431, 685, 709, 781, 1052, 1080
SsiI	CCGC	2 cut(s)	80, 1142
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	3 cut(s)	65, 514, 931
TaaI	ACNGT	4 cut(s)	43, 386, 537, 989
TaiI	ACGT	1 cut(s)	544
TasI	AATT	9 cut(s)	293, 316, 345, 431, 685, 709, 781, 1052, 1080
TfiI	GAWTC	1 cut(s)	1116
Tru1I	TTAA	2 cut(s)	654, 708
Tru9I	TTAA	2 cut(s)	654, 708
TscAI	CASTG	3 cut(s)	288, 391, 994
TseFI	GTSAC	5 cut(s)	168, 338, 537, 605, 908
Tsp45I	GTSAC	5 cut(s)	168, 338, 537, 605, 908
TspDTI	ATGAA	7 cut(s)	167, 264, 278, 434, 584, 810, 1045
TspGWI	ACGGA	2 cut(s)	354, 932
TspRI	CASTG	3 cut(s)	288, 391, 994
VneI	GTGCAC	1 cut(s)	1004
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	2 cut(s)	316, 685
XceI	RCATGY	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.