Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005919.1

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Forward (+)

53408 .. 55269

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005919.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgccagccaaatctaaagatgtagatccaggaacccagactgtgttgcaatcaagtatgcaaccttggtggcgtggagcgggaaatagttcgtcttttggtgaaagtgttgtagcatcgtctttgggggaacacggtaaccgttttgtgatgaatggcgctatgcagtcacaagctgatgctggagctaacttcaaaaaagatgtgcaggctacaataggatcacagtctgatgggaatagtggacatgaaaaccaacaaatgaaaagcgcttcctctgcagtggttgctaaattgggtgaacatcttgatgcgaattcacaaatggaacttgttggtcactcaattgtaagaactctctctctctctctctctctctctctctctctccaccatgaaagtgaatttggtttgttggtaaattcatatagggttctagtttatgttgatgctgtggttgctggatacaatctggttcgactgttgggcaagtgttcaatgtcagctggtttagtcaaacaaaatccacaagggtccagcctatacgtagcttggctttctctattgctcgatcaggtattacacttcgtcacttccctggctcttactctgtttactcttagccataataccactgagggcttcttcatacagttaccggacggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

222

Amino Acids

23.68

Weight (kDa)

6.02

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	20, 229
AcsI	RAATTY	3 cut(s)	316, 404, 421
AfeI	AGCGCT	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	196, 498
AjnI	CCWGG	2 cut(s)	28, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
AluBI	AGCT	4 cut(s)	176, 188, 506, 551
AluI	AGCT	4 cut(s)	176, 188, 506, 551
AlwI	GGATC	2 cut(s)	20, 229
Aor51HI	AGCGCT	1 cut(s)	271
ApoI	RAATTY	3 cut(s)	316, 404, 421
Asp700I	GAANNNNTTC	1 cut(s)	88
AspLEI	GCGC	2 cut(s)	161, 272
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	113, 311
AvaII	GGWCC	1 cut(s)	534
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	30, 599
BciVI	GTATCC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	2 cut(s)	162, 273
BfuI	GTATCC	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	30, 599
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	2 cut(s)	34, 535
BmrFI	CCNGG	2 cut(s)	30, 599
BmsI	GCATC	4 cut(s)	125, 169, 301, 439
BpmI	CTGGAG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	65, 597
BsaWI	WCCGGW	1 cut(s)	658
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	30, 599
BseDI	CCNNGG	2 cut(s)	65, 597
BseJI	GATNNNNATC	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	627
BsgI	GTGCAG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	25, 221, 571
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	34, 535
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	20, 229
BsrBI	CCGCTC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	65, 597
BssMI	GATC	3 cut(s)	25, 221, 571
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	30, 599
Bst4CI	ACNGT	7 cut(s)	43, 137, 143, 228, 483, 654, 665
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	6, 210
BstDEI	CTNAG	2 cut(s)	620, 636
BstEII	GGTNACC	1 cut(s)	137
BstH2I	RGCGCY	2 cut(s)	162, 273
BstHHI	GCGC	2 cut(s)	161, 272
BstKTI	GATC	3 cut(s)	28, 224, 574
BstMBI	GATC	3 cut(s)	25, 221, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 287, 458
BstNI	CCWGG	2 cut(s)	30, 599
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	28, 597
BstSFI	CTRYAG	1 cut(s)	279
BstSNI	TACGTA	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	288, 633
Cac8I	GCNNGC	2 cut(s)	6, 210
CfoI	GCGC	2 cut(s)	161, 272
Cfr13I	GGNCC	1 cut(s)	534
CspCI	CAANNNNNGTGG	2 cut(s)	50, 85
CviAII	CATG	2 cut(s)	248, 395
DdeI	CTNAG	2 cut(s)	620, 636
DpnI	GATC	3 cut(s)	27, 223, 573
DpnII	GATC	3 cut(s)	25, 221, 571
Eco105I	TACGTA	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	534
Eco47III	AGCGCT	1 cut(s)	271
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	28, 597
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	251, 398
FatI	CATG	2 cut(s)	247, 394
FauI	CCCGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	2 cut(s)	160, 271
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	2 cut(s)	162, 273
HapII	CCGG	1 cut(s)	659
HhaI	GCGC	2 cut(s)	161, 272
Hin1II	CATG	2 cut(s)	251, 398
Hin6I	GCGC	2 cut(s)	159, 270
HinP1I	GCGC	2 cut(s)	159, 270
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	113, 311
Hpy166II	GTNNAC	3 cut(s)	245, 302, 615
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	245, 302, 615
HpyCH4III	ACNGT	7 cut(s)	43, 137, 143, 228, 483, 654, 665
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	5 cut(s)	49, 61, 166, 208, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 287, 458
HpyF3I	CTNAG	2 cut(s)	620, 636
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	251, 398
HspAI	GCGC	2 cut(s)	159, 270
Kzo9I	GATC	3 cut(s)	25, 221, 571
LmnI	GCTCC	2 cut(s)	77, 185
LweI	GCATC	4 cut(s)	125, 169, 301, 439
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	5 cut(s)	137, 168, 338, 589, 654
MalI	GATC	3 cut(s)	27, 223, 573
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	3 cut(s)	25, 221, 571
MboII	GAAGA	1 cut(s)	637
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	5 cut(s)	293, 316, 345, 404, 421
MnlI	CCTC	2 cut(s)	286, 631
MroXI	GAANNNNTTC	1 cut(s)	88
MslI	CAYNNNNRTG	2 cut(s)	309, 399
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	30, 599
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	2 cut(s)	30, 599
MwoI	GCNNNNNNNGC	3 cut(s)	278, 287, 458
NdeII	GATC	3 cut(s)	25, 221, 571
NlaIII	CATG	2 cut(s)	251, 398
NlaIV	GGNNCC	2 cut(s)	34, 535
NmuCI	GTSAC	3 cut(s)	168, 338, 589
PdmI	GAANNNNTTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	28, 597
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	28, 597
PspN4I	GGNNCC	2 cut(s)	34, 535
PspPI	GGNCC	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	506
RseI	CAYNNNNRTG	2 cut(s)	309, 399
Sau3AI	GATC	3 cut(s)	25, 221, 571
Sau96I	GGNCC	1 cut(s)	534
ScrFI	CCNGG	2 cut(s)	30, 599
SetI	ASST	7 cut(s)	67, 178, 190, 508, 549, 553, 579
SfaNI	GCATC	4 cut(s)	125, 169, 301, 439
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	534
SmiMI	CAYNNNNRTG	2 cut(s)	309, 399
SnaBI	TACGTA	1 cut(s)	547
Sse9I	AATT	5 cut(s)	293, 316, 345, 404, 421
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	28, 597
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	7 cut(s)	43, 137, 143, 228, 483, 654, 665
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	478, 570
TasI	AATT	5 cut(s)	293, 316, 345, 404, 421
TscAI	CASTG	2 cut(s)	288, 640
TseFI	GTSAC	3 cut(s)	168, 338, 589
Tsp45I	GTSAC	3 cut(s)	168, 338, 589
TspDTI	ATGAA	6 cut(s)	167, 264, 278, 411, 414, 637
TspRI	CASTG	2 cut(s)	288, 640
VpaK11BI	GGWCC	1 cut(s)	534
XapI	RAATTY	3 cut(s)	316, 404, 421
XmnI	GAANNNNTTC	1 cut(s)	88
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.