Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Forward (+)

1285333 .. 1293724

Gene Structure 8392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G014500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATGCCAGCTAAATCTAAAGATGAAGATCCACATATAGAACACGGTGCCCAGACTGTGCTGGAATCAGCTATCTACGCCCAACCTTGGTGGCGTGGAGTGGGGAACAATTCATCGTCAGGTGAAAGTGCTCCAGCATCATCTTTGGTGGATCATCGTGATAGTATGGTCATGAATGGAGCTATGCAGTCACAAGCTAATGCTAGGCTGGATGGTGGGGCCAACTTCAACAAAGAATTGCGGACTACAGGAGGATCACAGTCTGACCAGAAAAATGGATGCAAAAACCAGCAAATCAAAAGCGTTTCTTCCTCGGTGGTTCCTACAATGGGTGAACACCTCGATCCAAATTCACAAATGGAACTTGTTGGTCACTCAATCGTTTTGACATCATATCCATATTCGGATCCACAATATGGCGGGATGTTGACTCCTTATGGGGCACAAGCTATGCTGCCTTCCCACTTCTATGGCATTCATCATGGTAGAATGCCTTTGCCCCTTGAAATGGAAGAGGAGCCTGTTTATGTAAATGCCAAGCAGTACCATGGCATTTTGAGACGAAGACAGTCACGTGCTAAAACTGAGCTTGAAAAGAAACTTATAAAAGCTCGAAAGCCATATCTTCACGAGTCTCGGCACCTACATGCATTGAGGAGGGCAAGGGGTTGTGGAGGTCGTTTCCTTAATACAAAGAAACAAGATGATAATGACGAAAATTCCTCACCAGAAAAAGGCCTGAGTTTGGATGCAAATGATTCAGCCCAATCTGCCAAATCTAGTTTTCAGTGCTTTCCCAATACAAGCAATGGGAGTCTTGATTCCTCAAATGTCCAGCAAGAAGGATCAGATCCATGGTTCAGGGCACACAAGAACCACACACTCTCTAGTGATAATGGCAATGGCAATGGCCGTGGCCCATCATCAGCATACCCTTCCACGTTTGGTGACAGCAAGGAAAGTGTTTTCCTGGGTCAGCAGAGGGAAAACATGCAGTTGAATGGGTCGTCTCGTGGGGCCATCCCCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

345

Amino Acids

37.66

Weight (kDa)

8.32

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccB1I	GGYRCC	2 cut(s)	47, 639
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	2 cut(s)	241, 420
AclWI	GGATC	8 cut(s)	23, 159, 262, 338, 401, 414, 845, 853
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	2 cut(s)	349, 718
AcvI	CACGTG	1 cut(s)	575
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	6 cut(s)	87, 329, 416, 508, 734, 745
AgsI	TTSAA	4 cut(s)	229, 506, 593, 1000
AjnI	CCWGG	1 cut(s)	969
AluBI	AGCT	7 cut(s)	11, 71, 182, 197, 449, 589, 611
AluI	AGCT	7 cut(s)	11, 71, 182, 197, 449, 589, 611
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	3 cut(s)	553, 639, 1014
AlwI	GGATC	8 cut(s)	23, 159, 262, 338, 401, 414, 845, 853
AoxI	GGCC	5 cut(s)	219, 736, 910, 916, 1017
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	2 cut(s)	349, 718
AspS9I	GGNCC	3 cut(s)	219, 917, 1017
AsuHPI	GGTGA	4 cut(s)	134, 344, 717, 959
BaeGI	GKGCMC	3 cut(s)	52, 445, 868
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	2 cut(s)	47, 639
BauI	CACGAG	2 cut(s)	629, 1011
BbrPI	CACGTG	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	3 cut(s)	206, 928, 1028
BceAI	ACGGC	1 cut(s)	897
BciT130I	CCWGG	1 cut(s)	971
BcoDI	GTCTC	3 cut(s)	553, 639, 1014
BfaI	CTAG	3 cut(s)	204, 780, 888
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	971
BmgT120I	GGNCC	3 cut(s)	219, 917, 1017
BmiI	GGNNCC	7 cut(s)	49, 220, 321, 408, 519, 641, 1018
BmrFI	CCNGG	1 cut(s)	971
BmrI	ACTGGG	1 cut(s)	1020
BmsI	GCATC	3 cut(s)	146, 269, 739
BmuI	ACTGGG	1 cut(s)	1020
BpiI	GAAGAC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	6 cut(s)	86, 312, 547, 854, 913, 970
Bsc4I	CCNNNNNNNGG	6 cut(s)	87, 329, 416, 508, 734, 745
Bse1I	ACTGG	1 cut(s)	1026
Bse3DI	GCAATG	3 cut(s)	814, 907, 913
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	971
BseDI	CCNNGG	6 cut(s)	86, 312, 547, 854, 913, 970
BseGI	GGATG	5 cut(s)	217, 284, 429, 754, 1020
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	6 cut(s)	87, 329, 416, 508, 734, 745
BseMI	GCAATG	3 cut(s)	814, 907, 913
BseMII	CTCAG	2 cut(s)	576, 731
BseNI	ACTGG	1 cut(s)	1026
BseRI	GAGGAG	2 cut(s)	530, 670
BseSI	GKGCMC	3 cut(s)	52, 445, 868
BseXI	GCAGC	1 cut(s)	441
BshFI	GGCC	5 cut(s)	221, 738, 912, 918, 1019
BshNI	GGYRCC	2 cut(s)	47, 639
BsiHKAI	GWGCWC	1 cut(s)	133
BslI	CCNNNNNNNGG	6 cut(s)	87, 329, 416, 508, 734, 745
BsmAI	GTCTC	3 cut(s)	553, 639, 1014
BsmBI	CGTCTC	2 cut(s)	553, 1014
BsmI	GAATGC	2 cut(s)	474, 495
BsnI	GGCC	5 cut(s)	221, 738, 912, 918, 1019
Bsp1286I	GDGCHC	4 cut(s)	52, 133, 445, 868
Bsp143I	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
Bsp19I	CCATGG	2 cut(s)	547, 854
BspACI	CCGC	2 cut(s)	241, 420
BspANI	GGCC	5 cut(s)	221, 738, 912, 918, 1019
BspCNI	CTCAG	2 cut(s)	577, 732
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	7 cut(s)	49, 220, 321, 408, 519, 641, 1018
BspPI	GGATC	8 cut(s)	23, 159, 262, 338, 401, 414, 845, 853
BspT107I	GGYRCC	2 cut(s)	47, 639
BsrDI	GCAATG	3 cut(s)	814, 907, 913
BsrI	ACTGG	1 cut(s)	1026
BssECI	CCNNGG	6 cut(s)	86, 312, 547, 854, 913, 970
BssMI	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
BssSI	CACGAG	2 cut(s)	629, 1011
BssT1I	CCWWGG	3 cut(s)	86, 547, 854
Bst2BI	CACGAG	2 cut(s)	629, 1011
Bst2UI	CCWGG	1 cut(s)	971
Bst4CI	ACNGT	4 cut(s)	47, 58, 261, 570
Bst6I	CTCTTC	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	585, 740
BstDSI	CCRYGG	3 cut(s)	547, 854, 913
BstF5I	GGATG	5 cut(s)	217, 284, 429, 754, 1020
BstKTI	GATC	7 cut(s)	31, 154, 257, 346, 409, 848, 853
BstMAI	GTCTC	3 cut(s)	553, 639, 1014
BstMBI	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 770
BstNI	CCWGG	1 cut(s)	971
BstNSI	RCATGY	2 cut(s)	650, 994
BstSCI	CCNGG	1 cut(s)	969
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	3 cut(s)	52, 445, 868
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	3 cut(s)	28, 406, 850
BstXI	CCANNNNNNTGG	2 cut(s)	275, 470
BstYI	RGATCY	3 cut(s)	28, 406, 850
BsuRI	GGCC	5 cut(s)	221, 738, 912, 918, 1019
BtgI	CCRYGG	3 cut(s)	547, 854, 913
BtsCI	GGATG	5 cut(s)	217, 284, 429, 754, 1020
BtsIMutI	CAGTG	1 cut(s)	794
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	219, 917, 1017
Csp6I	GTAC	1 cut(s)	544
CspCI	CAANNNNNGTGG	4 cut(s)	71, 106, 895, 930
CviAII	CATG	6 cut(s)	172, 482, 548, 647, 855, 991
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	585, 740
DpnI	GATC	7 cut(s)	30, 153, 256, 345, 408, 847, 852
DpnII	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	3 cut(s)	86, 547, 854
Eco147I	AGGCCT	1 cut(s)	738
Eco72I	CACGTG	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	969
EcoT14I	CCWWGG	3 cut(s)	86, 547, 854
EcoT22I	ATGCAT	1 cut(s)	652
ErhI	CCWWGG	3 cut(s)	86, 547, 854
Esp3I	CGTCTC	2 cut(s)	553, 1014
FaeI	CATG	6 cut(s)	175, 485, 551, 650, 858, 994
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FatI	CATG	6 cut(s)	171, 481, 547, 646, 854, 990
FauI	CCCGC	1 cut(s)	413
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	5 cut(s)	224, 291, 436, 761, 1007
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	3 cut(s)	204, 780, 888
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	221, 738, 912, 918, 1019
Hin1II	CATG	6 cut(s)	175, 485, 551, 650, 858, 994
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	6 cut(s)	65, 430, 632, 758, 814, 821
HphI	GGTGA	4 cut(s)	134, 344, 717, 959
Hpy166II	GTNNAC	2 cut(s)	335, 429
Hpy188I	TCNGA	3 cut(s)	265, 406, 850
Hpy188III	TCNNGA	4 cut(s)	158, 172, 629, 818
Hpy8I	GTNNAC	2 cut(s)	335, 429
HpyAV	CCTTC	3 cut(s)	468, 836, 945
HpyCH4III	ACNGT	4 cut(s)	47, 58, 261, 570
HpyCH4IV	ACGT	2 cut(s)	574, 941
HpyCH4V	TGCA	5 cut(s)	187, 282, 650, 752, 994
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 770
HpyF3I	CTNAG	2 cut(s)	585, 740
HpySE526I	ACGT	2 cut(s)	574, 941
Hsp92II	CATG	6 cut(s)	175, 485, 551, 650, 858, 994
Kzo9I	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
LmnI	GCTCC	3 cut(s)	136, 179, 517
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	3 cut(s)	146, 269, 739
MaeI	CTAG	3 cut(s)	204, 780, 888
MaeII	ACGT	2 cut(s)	574, 941
MaeIII	GTNAC	4 cut(s)	189, 371, 570, 947
MalI	GATC	7 cut(s)	30, 153, 256, 345, 408, 847, 852
MboI	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
MboII	GAAGA	5 cut(s)	38, 300, 524, 576, 617
MflI	RGATCY	3 cut(s)	28, 406, 850
MhlI	GDGCHC	4 cut(s)	52, 133, 445, 868
MluCI	AATT	4 cut(s)	109, 236, 349, 718
MlyI	GAGTC	3 cut(s)	424, 641, 823
Mph1103I	ATGCAT	1 cut(s)	652
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	2 cut(s)	468, 645
MspR9I	CCNGG	1 cut(s)	971
Mva1269I	GAATGC	2 cut(s)	474, 495
MvaI	CCWGG	1 cut(s)	971
MwoI	GCNNNNNNNGC	2 cut(s)	77, 770
NcoI	CCATGG	2 cut(s)	547, 854
NdeII	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
NlaIII	CATG	6 cut(s)	175, 485, 551, 650, 858, 994
NlaIV	GGNNCC	7 cut(s)	49, 220, 321, 408, 519, 641, 1018
NmeAIII	GCCGAG	1 cut(s)	616
NmuCI	GTSAC	4 cut(s)	189, 371, 570, 947
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	2 cut(s)	650, 994
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	738
PctI	GAATGC	2 cut(s)	474, 495
PfeI	GAWTC	3 cut(s)	65, 758, 821
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	456
PleI	GAGTC	3 cut(s)	424, 640, 822
PmaCI	CACGTG	1 cut(s)	575
PmlI	CACGTG	1 cut(s)	575
PpsI	GAGTC	3 cut(s)	424, 640, 822
Ppu21I	YACGTR	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	969
PspCI	CACGTG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	969
PspN4I	GGNNCC	7 cut(s)	49, 220, 321, 408, 519, 641, 1018
PspPI	GGNCC	3 cut(s)	219, 917, 1017
PsuI	RGATCY	3 cut(s)	28, 406, 850
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	2 cut(s)	468, 645
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	7 cut(s)	28, 151, 254, 343, 406, 845, 850
Sau96I	GGNCC	3 cut(s)	219, 917, 1017
SchI	GAGTC	3 cut(s)	424, 641, 823
ScrFI	CCNGG	1 cut(s)	971
SduI	GDGCHC	4 cut(s)	52, 133, 445, 868
SfaNI	GCATC	3 cut(s)	146, 269, 739
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	2 cut(s)	468, 645
Sse9I	AATT	4 cut(s)	109, 236, 349, 718
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	2 cut(s)	241, 420
SspMI	CTAG	3 cut(s)	204, 780, 888
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	969
StyI	CCWWGG	3 cut(s)	86, 547, 854
TaaI	ACNGT	4 cut(s)	47, 58, 261, 570
TaiI	ACGT	2 cut(s)	577, 944
TaqI	TCGA	2 cut(s)	342, 613
TasI	AATT	4 cut(s)	109, 236, 349, 718
TfiI	GAWTC	3 cut(s)	65, 758, 821
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	794
TseFI	GTSAC	4 cut(s)	189, 371, 570, 947
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	4 cut(s)	189, 371, 570, 947
TspDTI	ATGAA	4 cut(s)	39, 102, 188, 467
TspRI	CASTG	1 cut(s)	794
Van91I	CCANNNNNTGG	1 cut(s)	416
XapI	RAATTY	2 cut(s)	349, 718
XceI	RCATGY	2 cut(s)	650, 994
XspI	CTAG	3 cut(s)	204, 780, 888
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.