Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Forward (+)

1934469 .. 1940190

Gene Structure 5722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATGCCAGCCAAATCTAAAGATGTAGATCCAGGAACCCAGACTGTGTTGCAATCAAGTATGCAACCTTGGTGGCGTGGAGCGGGACATAGTTCGTCTTTTGGTGAAAGTGTTGTAGCATCGTCTTTGGGGGAACACGGTAACCGTTTTGTGATGAATGGCGCTATGCAGTCACAAGCTGATGCTGGAGCTAACTTCAAAAAAGATGTGCAGGCTACAATAGGATCACAGTCTGATGGGAATAGTGGACATGAAAACCAACAAATGAAAAGCACTTCCTCTGCAGTGGTTGCTAAATTGGGTGAACATCTTGATGCGAATTCACAAATGGAACTTGTTGGTCACTCAATTGTTTTGACATCATATCCATATTCAGATCCACAATACAGTGGGATGTTGAGTCATTATCGGCCACAAGCTATGGTGCCCCCTCAATTCTATGGCTTGCATCATGGTAGAATGCCCTTGCCCCTTGAAATGGAAGAGGAGCCTGTTTATGTAAATGCCAAGCAATACCATGGTATTTTGAGACGAAGACAGTCACGTGCTAAAGCTGAGCTTGAAAGGAAGCTTATAAAAGTTAGGAAGCCATATCTTCATGAGTCTCGTCACCAGCATGCGTTGAGGAGAGCAAGGGGTTGTGGAGGCCGTTTCCTTAATACGAAGAAGCAAGATGATAGTGATGCAAATTCCTCATCAGAAAAAACCATTAATTTGGATGCAAACTTTTCACCCAAATCTGCCAAATCTGGTTTTGAGTGCTTTCCTAATGATAGCAATGGCAATTTCGTTTCCTCCAATGTCCAGCAAGAAGGATCAGGTTCATGGTTCAGGACACTCAATAGCCACACACTCTCCAACGGTAATGGCAATGGCCATGTCCCGTCATCAACGTATCGTACAACATTTAATGACGGCAAGGAAGGTGTTTTCCTTGGTCAACAGAAGGAAACAATGCAGTTGAATGGATCCTCTCGTGGGGCCATTCACAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

332

Amino Acids

36.47

Weight (kDa)

9.3

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	163 - 218	1.3e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	83
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	6 cut(s)	23, 232, 371, 823, 963, 976
AcoI	YGGCCR	2 cut(s)	410, 874
AcsI	RAATTY	2 cut(s)	319, 688
AcvI	CACGTG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	901
AfiI	CCNNNNNNNGG	2 cut(s)	478, 978
AgsI	TTSAA	4 cut(s)	199, 476, 563, 964
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	6 cut(s)	179, 191, 419, 554, 559, 571
AluI	AGCT	6 cut(s)	179, 191, 419, 554, 559, 571
Alw26I	GTCTC	2 cut(s)	523, 609
AlwI	GGATC	6 cut(s)	23, 232, 371, 823, 963, 976
AoxI	GGCC	4 cut(s)	410, 646, 874, 981
ApoI	RAATTY	2 cut(s)	319, 688
AseI	ATTAAT	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	981
AsuHPI	GGTGA	4 cut(s)	116, 314, 602, 723
BaeGI	GKGCMC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	876
BamHI	GGATCC	1 cut(s)	968
BanI	GGYRCC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	975
BbrPI	CACGTG	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	541
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	633, 931
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	523, 609
BfmI	CTRYAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	165
BlpI	GCTNAGC	1 cut(s)	555
Bme1390I	CCNGG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	981
BmiI	GGNNCC	5 cut(s)	37, 426, 489, 970, 982
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	6 cut(s)	128, 172, 304, 457, 673, 709
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	68, 517, 934
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 978
Bse3DI	GCAATG	2 cut(s)	784, 877
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	68, 517, 934
BseGI	GGATG	2 cut(s)	399, 724
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	478, 978
BseMI	GCAATG	2 cut(s)	784, 877
BseMII	CTCAG	1 cut(s)	546
BseRI	GAGGAG	2 cut(s)	500, 640
BseSI	GKGCMC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	412, 648, 876, 983
BshNI	GGYRCC	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	99, 866
BslI	CCNNNNNNNGG	2 cut(s)	478, 978
BsmAI	GTCTC	2 cut(s)	523, 609
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	99, 866
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	4 cut(s)	412, 648, 876, 983
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	5 cut(s)	28, 224, 376, 815, 968
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	4 cut(s)	412, 648, 876, 983
BspCNI	CTCAG	1 cut(s)	547
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	5 cut(s)	37, 426, 489, 970, 982
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	6 cut(s)	23, 232, 371, 823, 963, 976
BspT107I	GGYRCC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	784, 877
BssECI	CCNNGG	3 cut(s)	68, 517, 934
BssMI	GATC	5 cut(s)	28, 224, 376, 815, 968
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	3 cut(s)	68, 517, 934
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	8 cut(s)	46, 140, 146, 231, 389, 540, 863, 992
Bst6I	CTCTTC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	9, 213, 446, 618
BstDEI	CTNAG	1 cut(s)	555
BstDSI	CCRYGG	1 cut(s)	517
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	399, 724
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	31, 227, 379, 818, 971
BstMAI	GTCTC	2 cut(s)	523, 609
BstMBI	GATC	5 cut(s)	28, 224, 376, 815, 968
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	620
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	3 cut(s)	28, 376, 968
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	3 cut(s)	28, 376, 968
BsuRI	GGCC	4 cut(s)	412, 648, 876, 983
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	2 cut(s)	399, 724
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 394
Cac8I	GCNNGC	4 cut(s)	9, 213, 446, 618
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	981
Csp6I	GTAC	1 cut(s)	900
CspCI	CAANNNNNGTGG	2 cut(s)	53, 88
CviAII	CATG	7 cut(s)	251, 452, 518, 599, 617, 825, 878
CviQI	GTAC	1 cut(s)	900
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	5 cut(s)	30, 226, 378, 817, 970
DpnII	GATC	5 cut(s)	28, 224, 376, 815, 968
EaeI	YGGCCR	2 cut(s)	410, 874
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	3 cut(s)	68, 517, 934
Eco72I	CACGTG	1 cut(s)	545
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	68, 517, 934
ErhI	CCWWGG	3 cut(s)	68, 517, 934
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	7 cut(s)	254, 455, 521, 602, 620, 828, 881
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FaqI	GGGAC	2 cut(s)	99, 866
FatI	CATG	7 cut(s)	250, 451, 517, 598, 616, 824, 877
FauI	CCCGC	1 cut(s)	76
FokI	GGATG	2 cut(s)	406, 731
GlaI	GCGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	412, 648, 876, 983
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	7 cut(s)	254, 455, 521, 602, 620, 828, 881
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	941
HindII	GTYRAC	1 cut(s)	941
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	2 cut(s)	400, 602
HphI	GGTGA	4 cut(s)	116, 314, 602, 723
Hpy166II	GTNNAC	3 cut(s)	248, 305, 941
Hpy188I	TCNGA	3 cut(s)	235, 376, 700
Hpy188III	TCNNGA	3 cut(s)	311, 599, 832
Hpy8I	GTNNAC	3 cut(s)	248, 305, 941
HpyAV	CCTTC	3 cut(s)	806, 917, 940
HpyCH4III	ACNGT	8 cut(s)	46, 140, 146, 231, 389, 540, 863, 992
HpyCH4IV	ACGT	2 cut(s)	544, 893
HpyCH4V	TGCA	9 cut(s)	52, 64, 169, 211, 284, 448, 686, 722, 958
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	555
HpySE526I	ACGT	2 cut(s)	544, 893
Hsp92II	CATG	7 cut(s)	254, 455, 521, 602, 620, 828, 881
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	5 cut(s)	28, 224, 376, 815, 968
LmnI	GCTCC	3 cut(s)	80, 188, 487
LweI	GCATC	6 cut(s)	128, 172, 304, 457, 673, 709
MaeII	ACGT	2 cut(s)	544, 893
MaeIII	GTNAC	5 cut(s)	140, 171, 341, 540, 608
MalI	GATC	5 cut(s)	30, 226, 378, 817, 970
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	5 cut(s)	28, 224, 376, 815, 968
MboII	GAAGA	4 cut(s)	494, 546, 587, 676
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	3 cut(s)	28, 376, 968
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	876
MluCI	AATT	7 cut(s)	296, 319, 348, 434, 688, 712, 784
MluNI	TGGCCA	1 cut(s)	876
MlyI	GAGTC	2 cut(s)	409, 611
MmeI	TCCRAC	1 cut(s)	882
MnlI	CCTC	8 cut(s)	289, 441, 478, 618, 638, 703, 805, 982
Mox20I	TGGCCA	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	876
MseI	TTAA	3 cut(s)	657, 711, 909
MslI	CAYNNNNRTG	2 cut(s)	312, 615
Msp20I	TGGCCA	1 cut(s)	876
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	517
NdeII	GATC	5 cut(s)	28, 224, 376, 815, 968
NlaIII	CATG	7 cut(s)	254, 455, 521, 602, 620, 828, 881
NlaIV	GGNNCC	5 cut(s)	37, 426, 489, 970, 982
NmuCI	GTSAC	4 cut(s)	171, 341, 540, 608
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PagI	TCATGA	1 cut(s)	598
PctI	GAATGC	1 cut(s)	465
PfoI	TCCNGGA	1 cut(s)	31
PleI	GAGTC	2 cut(s)	408, 610
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	408, 610
Ppu21I	YACGTR	1 cut(s)	545
PshBI	ATTAAT	1 cut(s)	711
PsiI	TTATAA	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	545
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	5 cut(s)	37, 426, 489, 970, 982
PspPI	GGNCC	1 cut(s)	981
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	3 cut(s)	28, 376, 968
RsaI	GTAC	1 cut(s)	901
RsaNI	GTAC	1 cut(s)	900
RseI	CAYNNNNRTG	2 cut(s)	312, 615
SaqAI	TTAA	3 cut(s)	657, 711, 909
Sau3AI	GATC	5 cut(s)	28, 224, 376, 815, 968
Sau96I	GGNCC	1 cut(s)	981
SchI	GAGTC	2 cut(s)	409, 611
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	6 cut(s)	128, 172, 304, 457, 673, 709
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	2 cut(s)	312, 615
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	7 cut(s)	296, 319, 348, 434, 688, 712, 784
SsiI	CCGC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	3 cut(s)	68, 517, 934
TaaI	ACNGT	8 cut(s)	46, 140, 146, 231, 389, 540, 863, 992
TaiI	ACGT	2 cut(s)	547, 896
TasI	AATT	7 cut(s)	296, 319, 348, 434, 688, 712, 784
Tru1I	TTAA	3 cut(s)	657, 711, 909
Tru9I	TTAA	3 cut(s)	657, 711, 909
TscAI	CASTG	2 cut(s)	291, 394
TseFI	GTSAC	4 cut(s)	171, 341, 540, 608
Tsp45I	GTSAC	4 cut(s)	171, 341, 540, 608
TspDTI	ATGAA	5 cut(s)	170, 267, 281, 587, 813
TspRI	CASTG	2 cut(s)	291, 394
VspI	ATTAAT	1 cut(s)	711
XapI	RAATTY	2 cut(s)	319, 688
XceI	RCATGY	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.