Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Forward (+)

1729730 .. 1732863

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0009300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGACAGCAGCGGCTTGAAAACCCTAACCCCTTTCTCTCCTTTAAATCCATTTCGCTCCAGAGGAGGAGCTCCTCTCTTTGCTTCTCTATACTTGGCTCATCTCAACCGCAAATCTCGCCTCTCTCTTTCCTCCACTCGCTGCTCACTCTCTGAGGGGGGCAAAGAGTGTTCTTTGGCTCATGGGGCAGGGCAGGCACTCAAACAAGTCTCACAAACTAAGATTCTTCAAGTCGTTCTCGTGTCTCCTCAGATTCCTGGAAATACAGGTTGCATTGCCAGAACATGTGCAGCATCAGCAGTTGGGCTTCATCTGGTTGGGCCCTTGGGCTTTCAGATTGATGATGCAAAATTAAAGCGTGCTGGATTGGACTATTGGCCATATGTGGTTGTCAAAGTTCACAGCTCATGGGCAGAGTTTCAAGACTATTTCAGACAACAGGATGGTGAAAAGCGGTTGCTTGCATTTACAAAGAGAGCGACAAAATTTCATTCAGATTTTTCTTATAGAAGAGGTGATTTTCTCATATTTGGGTCAGAAACAAGCGGCCTACCACCTGAAGCCCTCCAAGACTGCAAGAGTGGAACATTTGGCGGTGGAACACTTAGGATTCCAATGGTTGAAACGTATGTAAGATGTCTCAATCTCTCTGTAAGTGTTGGCATTGCTTTATATGAAGCTTCGAGACAGTTAAATTATGAGCAGCTTCAATTTCCACTTGAAAATTGTATGGATAGTGAAAAATCAATTGTCACAGAGGACATTTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

257

Amino Acids

28.18

Weight (kDa)

8.81

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	76 - 225	8.1e-31	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	12, 109, 454, 546, 594
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	579
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	6 cut(s)	19, 230, 422, 623, 710, 722
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	71, 405, 680, 706
AluI	AGCT	4 cut(s)	71, 405, 680, 706
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	4 cut(s)	214, 249, 644, 679
AoxI	GGCC	3 cut(s)	320, 377, 547
ApaI	GGGCCC	1 cut(s)	324
ApeKI	GCWGC	4 cut(s)	9, 141, 290, 703
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	320, 321
AsuHPI	GGTGA	2 cut(s)	458, 527
BaeGI	GKGCMC	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	379
BanII	GRGCYC	2 cut(s)	73, 324
BauI	CACGAG	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	4 cut(s)	21, 128, 302, 715
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	4 cut(s)	214, 249, 644, 679
BisI	GCNGC	6 cut(s)	10, 13, 142, 291, 547, 704
BlsI	GCNGC	6 cut(s)	11, 14, 143, 292, 548, 705
Bme1390I	CCNGG	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	320, 321
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	302, 334
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	324
Bse3DI	GCAATG	2 cut(s)	273, 663
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	273, 663
BseMII	CTCAG	2 cut(s)	144, 263
BseRI	GAGGAG	4 cut(s)	63, 78, 81, 237
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	4 cut(s)	21, 128, 302, 715
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	322, 379, 549
BsiHKAI	GWGCWC	1 cut(s)	73
BsmAI	GTCTC	4 cut(s)	214, 249, 644, 679
BsnI	GGCC	3 cut(s)	322, 379, 549
Bsp120I	GGGCCC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	73, 324
BspACI	CCGC	5 cut(s)	12, 109, 454, 546, 594
BspANI	GGCC	3 cut(s)	322, 379, 549
BspCNI	CTCAG	2 cut(s)	145, 262
BspLI	GGNNCC	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	273, 663
BssECI	CCNNGG	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	1 cut(s)	505
BstC8I	GCNNGC	3 cut(s)	195, 360, 462
BstDEI	CTNAG	4 cut(s)	153, 219, 249, 605
BstF5I	GGATG	1 cut(s)	448
BstMAI	GTCTC	4 cut(s)	214, 249, 644, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 185, 194, 296
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	324
BstV1I	GCAGC	4 cut(s)	21, 128, 302, 715
BsuRI	GGCC	3 cut(s)	322, 379, 549
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	195, 360, 462
Cfr13I	GGNCC	2 cut(s)	320, 321
CviAII	CATG	3 cut(s)	182, 285, 408
DdeI	CTNAG	4 cut(s)	153, 219, 249, 605
DraI	TTTAAA	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	73, 324
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	579
EcoICRI	GAGCTC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	73, 324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	185, 288, 411
FatI	CATG	3 cut(s)	181, 284, 407
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	6 cut(s)	10, 13, 142, 291, 547, 704
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	73, 324
Fsp4HI	GCNGC	6 cut(s)	10, 13, 142, 291, 547, 704
GluI	GCNGC	6 cut(s)	10, 13, 142, 291, 547, 704
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	322, 379, 549
Hin1II	CATG	3 cut(s)	185, 288, 411
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	3 cut(s)	223, 253, 610
HphI	GGTGA	2 cut(s)	458, 527
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	6 cut(s)	154, 252, 336, 434, 496, 538
Hpy188III	TCNNGA	3 cut(s)	60, 422, 684
Hpy8I	GTNNAC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	6 cut(s)	273, 290, 347, 464, 576, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 185, 194, 296
HpyF3I	CTNAG	4 cut(s)	153, 219, 249, 605
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	3 cut(s)	185, 288, 411
LmnI	GCTCC	3 cut(s)	62, 68, 76
Lsp1109I	GCAGC	4 cut(s)	21, 128, 302, 715
LweI	GCATC	2 cut(s)	302, 334
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	1 cut(s)	751
MboII	GAAGA	2 cut(s)	218, 522
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	2 cut(s)	73, 324
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	6 cut(s)	350, 485, 694, 710, 724, 747
MluNI	TGGCCA	1 cut(s)	379
Mox20I	TGGCCA	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	379
MseI	TTAA	3 cut(s)	44, 353, 692
Msp20I	TGGCCA	1 cut(s)	379
MspA1I	CMGCKG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	4 cut(s)	117, 185, 194, 296
NdeI	CATATG	1 cut(s)	382
NlaIII	CATG	3 cut(s)	185, 288, 411
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	751
NspI	RCATGY	1 cut(s)	288
PciI	ACATGT	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	223, 253, 610
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	6 cut(s)	11, 14, 143, 292, 548, 705
PscI	ACATGT	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	322
PspOMI	GGGCCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	320, 321
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	44, 353, 692
SatI	GCNGC	6 cut(s)	10, 13, 142, 291, 547, 704
Sau96I	GGNCC	2 cut(s)	320, 321
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	73, 324
SetI	ASST	8 cut(s)	73, 271, 407, 517, 559, 629, 682, 708
SfaNI	GCATC	2 cut(s)	302, 334
Sse9I	AATT	6 cut(s)	350, 485, 694, 710, 724, 747
SsiI	CCGC	5 cut(s)	12, 109, 454, 546, 594
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	690
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	1 cut(s)	683
TasI	AATT	6 cut(s)	350, 485, 694, 710, 724, 747
TauI	GCSGC	2 cut(s)	15, 549
TfiI	GAWTC	3 cut(s)	223, 253, 610
Tru1I	TTAA	3 cut(s)	44, 353, 692
Tru9I	TTAA	3 cut(s)	44, 353, 692
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	4 cut(s)	9, 141, 290, 703
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	3 cut(s)	299, 479, 690
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.