Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Reverse (-)

1723286 .. 1728593

Gene Structure 5308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCATTCCTGGAAAGGTTCAAACAACTTCAACAAGAGAAGGAAAATGAGAGGGGCGCTGCAGTAGAGGATTCTAAGCTAGGTAAAGCTGTTTCAGGGAACCTTACCATTGGTAAAACCAGTACTGAATCGAAGGCTAATGATACACGCAAGACCACGCATGCTGCTTCGGGTGGTAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGATTGTGGCCCCTCCTGTTAAGTTAGGAGCAGATGAGGATGAAGATGGAGCAGATATTGTAAATGTTTCTGGTGATGCAACAACTAAACGACAAAAGTTGGGTCAGCCAGATGCGGCAGAGGAATCTTCTGGACAAGTGGATGTTGCACCACCTTCCCCAAGTGATTCTACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAACATGGAAGGCAATTTGAGCATATTACACGACAAAAAAATCCAGGAGATAACCCCTTCAAATTTTTATTTGATGAGAGCTGTGCTGATTACAAGTATTATGAATATCGGCTTGCTGATGAGGAGAAAGCCCTCAGACAGACCAGGGAGTTTGAATCATCACGTAATGGAGGTTCAAGCATGTCAACTTCTAAATCCACAAGTGGTTCCCAAAGGTCTACTTTGAAGCATCCAAGTTATCAAACTCCTGCCTCTGCATTGTATGAAGCCACCGAGGATCCAACATATGGGACTTCATTGGGAAGGACAGGTGAGTCTAGTGGGCCAACAGGTGCAGATCCTATTGCCATGATGGAATTCTATGTGAAAAAGGCAGCACAAGAAGAGAGGAAGAGACAACCTAAACAGTCAAAAGATGAAATGCCCCCACCTGCATCTCTTCAAGCGCCTTCGCTTAAAAAAGGTCACCACATGGGCGATTACATCCCACAAGAAGAGCTGGAGAAGTTCATGGCTGCTTGTAATGATGCAGCTGCGCAGAAAGCTGCCAAAGAAGCTGCAGATAGGGCCAAAATACAGGCTGATAATGTGGGTCATAAACTCTTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGAAGCTCCAGAAGAGGAATTTCAGATCCCATTATGGCAGGTAATGTCAAGAAGGACAATTTGGGGGTTGGTGCTCAACAACCTGGAGAGGTGACTCCTGAAGATGATATATACGAGCAGTACAAGAAGCGGATGATGCTTGGTTACCGTCACAGACCTAATCCTCTGAACAATCCGCGTAAAGCATACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

430

Amino Acids

46.92

Weight (kDa)

8.46

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	144 - 192	5.6e-13	Surp module
G-patch	PF01585	348 - 391	1.9e-14	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
AasI	GACNNNNNNGTC	1 cut(s)	772
Acc16I	TGCGCA	1 cut(s)	996
Acc36I	ACCTGC	2 cut(s)	898, 1127
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	1 cut(s)	1276
AciI	CCGC	3 cut(s)	362, 1228, 1274
AclWI	GGATC	4 cut(s)	731, 744, 791, 1118
AcsI	RAATTY	3 cut(s)	521, 815, 1116
AcuI	CTGAAG	1 cut(s)	1218
AfaI	GTAC	2 cut(s)	163, 1220
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	8 cut(s)	61, 71, 235, 520, 614, 636, 685, 902
AjnI	CCWGG	4 cut(s)	48, 502, 602, 1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	1142, 1174
AluBI	AGCT	9 cut(s)	118, 128, 231, 540, 958, 992, 1004, 1016, 1104
AluI	AGCT	9 cut(s)	118, 128, 231, 540, 958, 992, 1004, 1016, 1104
Alw21I	GWGCWC	1 cut(s)	1174
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	4 cut(s)	731, 744, 791, 1118
AoxI	GGCC	3 cut(s)	255, 782, 1026
ApeKI	GCWGC	8 cut(s)	98, 203, 833, 974, 989, 992, 1004, 1016
ApoI	RAATTY	3 cut(s)	521, 815, 1116
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AspLEI	GCGC	3 cut(s)	98, 907, 997
AspS9I	GGNCC	3 cut(s)	256, 782, 1026
AsuHPI	GGTGA	5 cut(s)	332, 782, 917, 1100, 1201
BamHI	GGATCC	1 cut(s)	736
Bbv12I	GWGCWC	1 cut(s)	1174
BbvI	GCAGC	8 cut(s)	85, 190, 845, 961, 979, 991, 1001, 1003
BccI	CCATC	3 cut(s)	32, 287, 805
BciT130I	CCWGG	4 cut(s)	50, 504, 604, 1182
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	4 cut(s)	21, 119, 443, 777
BfmI	CTRYAG	3 cut(s)	99, 417, 1017
BfoI	RGCGCY	2 cut(s)	99, 908
BfuAI	ACCTGC	2 cut(s)	898, 1127
BisI	GCNGC	9 cut(s)	99, 204, 363, 834, 975, 990, 993, 1005, 1017
BlsI	GCNGC	9 cut(s)	100, 205, 364, 835, 976, 991, 994, 1006, 1018
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	4 cut(s)	50, 504, 604, 1182
BmgT120I	GGNCC	3 cut(s)	256, 782, 1026
BmiI	GGNNCC	4 cut(s)	140, 258, 667, 738
BmrFI	CCNGG	4 cut(s)	50, 504, 604, 1182
BmsI	GCATC	6 cut(s)	313, 349, 697, 902, 976, 1224
BpmI	CTGGAG	3 cut(s)	980, 1090, 1203
BsaAI	YACGTR	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	603, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	4 cut(s)	50, 504, 604, 1182
BseDI	CCNNGG	2 cut(s)	603, 732
BseGI	GGATG	5 cut(s)	292, 394, 688, 942, 1236
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMII	CTCAG	1 cut(s)	607
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	8 cut(s)	85, 190, 845, 961, 979, 991, 1001, 1003
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	1276
BshFI	GGCC	3 cut(s)	257, 784, 1028
BsiHKAI	GWGCWC	1 cut(s)	1174
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	763
BsnI	GGCC	3 cut(s)	257, 784, 1028
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp143I	GATC	3 cut(s)	736, 796, 1123
BspACI	CCGC	3 cut(s)	362, 1228, 1274
BspANI	GGCC	3 cut(s)	257, 784, 1028
BspCNI	CTCAG	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	1276
BspLI	GGNNCC	4 cut(s)	140, 258, 667, 738
BspMAI	CTGCAG	2 cut(s)	103, 1021
BspMI	ACCTGC	2 cut(s)	898, 1127
BspPI	GGATC	4 cut(s)	731, 744, 791, 1118
BspQI	GCTCTTC	1 cut(s)	948
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	603, 732
BssMI	GATC	3 cut(s)	736, 796, 1123
Bst2UI	CCWGG	4 cut(s)	50, 504, 604, 1182
Bst4CI	ACNGT	3 cut(s)	421, 867, 1247
Bst6I	CTCTTC	5 cut(s)	837, 845, 903, 948, 1105
BstBAI	YACGTR	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	201, 573
BstDEI	CTNAG	2 cut(s)	114, 593
BstEII	GGTNACC	2 cut(s)	923, 1241
BstF5I	GGATG	5 cut(s)	292, 394, 688, 942, 1236
BstFNI	CGCG	1 cut(s)	1276
BstH2I	RGCGCY	2 cut(s)	99, 908
BstHHI	GCGC	3 cut(s)	98, 907, 997
BstKTI	GATC	3 cut(s)	739, 799, 1126
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	3 cut(s)	736, 796, 1123
BstMWI	GCNNNNNNNGC	5 cut(s)	478, 1001, 1013, 1025, 1234
BstNI	CCWGG	4 cut(s)	50, 504, 604, 1182
BstNSI	RCATGY	2 cut(s)	203, 643
BstPI	GGTNACC	2 cut(s)	923, 1241
BstSCI	CCNGG	4 cut(s)	48, 502, 602, 1180
BstSFI	CTRYAG	3 cut(s)	99, 417, 1017
BstUI	CGCG	1 cut(s)	1276
BstV1I	GCAGC	8 cut(s)	85, 190, 845, 961, 979, 991, 1001, 1003
BstX2I	RGATCY	3 cut(s)	736, 796, 1123
BstYI	RGATCY	3 cut(s)	736, 796, 1123
BsuRI	GGCC	3 cut(s)	257, 784, 1028
BtsCI	GGATG	5 cut(s)	292, 394, 688, 942, 1236
BtsIMutI	CAGTG	1 cut(s)	426
BveI	ACCTGC	2 cut(s)	898, 1127
Cac8I	GCNNGC	2 cut(s)	201, 573
CfoI	GCGC	3 cut(s)	98, 907, 997
Cfr13I	GGNCC	3 cut(s)	256, 782, 1026
Csp6I	GTAC	2 cut(s)	162, 1219
CspCI	CAANNNNNGTGG	4 cut(s)	234, 269, 435, 470
CviAII	CATG	6 cut(s)	200, 464, 640, 808, 931, 970
CviQI	GTAC	2 cut(s)	162, 1219
DdeI	CTNAG	2 cut(s)	114, 593
DpnI	GATC	3 cut(s)	738, 798, 1125
DpnII	GATC	3 cut(s)	736, 796, 1123
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
Eam1104I	CTCTTC	5 cut(s)	837, 845, 903, 948, 1105
EarI	CTCTTC	5 cut(s)	837, 845, 903, 948, 1105
Eco57I	CTGAAG	1 cut(s)	1218
Eco91I	GGTNACC	2 cut(s)	923, 1241
EcoO65I	GGTNACC	2 cut(s)	923, 1241
EcoRI	GAATTC	1 cut(s)	815
EcoRII	CCWGG	4 cut(s)	48, 502, 602, 1180
FaeI	CATG	6 cut(s)	203, 467, 643, 811, 934, 973
FalI	AAGNNNNNCTT	2 cut(s)	664, 696
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	6 cut(s)	199, 463, 639, 807, 930, 969
FauNDI	CATATG	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	9 cut(s)	99, 204, 363, 834, 975, 990, 993, 1005, 1017
FokI	GGATG	5 cut(s)	299, 401, 675, 929, 1243
Fsp4HI	GCNGC	9 cut(s)	99, 204, 363, 834, 975, 990, 993, 1005, 1017
FspBI	CTAG	4 cut(s)	21, 119, 443, 777
FspI	TGCGCA	1 cut(s)	996
GlaI	GCGC	3 cut(s)	97, 906, 996
GluI	GCNGC	9 cut(s)	99, 204, 363, 834, 975, 990, 993, 1005, 1017
GsuI	CTGGAG	3 cut(s)	980, 1090, 1203
HaeII	RGCGCY	2 cut(s)	99, 908
HaeIII	GGCC	3 cut(s)	257, 784, 1028
HhaI	GCGC	3 cut(s)	98, 907, 997
Hin1II	CATG	6 cut(s)	203, 467, 643, 811, 934, 973
Hin6I	GCGC	3 cut(s)	96, 905, 995
HinP1I	GCGC	3 cut(s)	96, 905, 995
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HinfI	GANTC	8 cut(s)	16, 110, 167, 371, 413, 614, 773, 1192
HphI	GGTGA	5 cut(s)	332, 782, 917, 1100, 1201
Hpy166II	GTNNAC	3 cut(s)	218, 645, 678
Hpy188I	TCNGA	3 cut(s)	596, 1123, 1266
Hpy188III	TCNNGA	4 cut(s)	378, 1107, 1147, 1196
Hpy8I	GTNNAC	3 cut(s)	218, 645, 678
HpyAV	CCTTC	9 cut(s)	73, 166, 411, 462, 526, 756, 918, 1079, 1144
HpyCH4III	ACNGT	3 cut(s)	421, 867, 1247
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	8 cut(s)	101, 326, 395, 716, 794, 893, 989, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	478, 1001, 1013, 1025, 1234
HpyF3I	CTNAG	2 cut(s)	114, 593
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	6 cut(s)	203, 467, 643, 811, 934, 973
HspAI	GCGC	3 cut(s)	96, 905, 995
Kzo9I	GATC	3 cut(s)	736, 796, 1123
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	3 cut(s)	275, 296, 1109
Lsp1109I	GCAGC	8 cut(s)	85, 190, 845, 961, 979, 991, 1001, 1003
LweI	GCATC	6 cut(s)	313, 349, 697, 902, 976, 1224
MaeI	CTAG	4 cut(s)	21, 119, 443, 777
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	5 cut(s)	13, 923, 1189, 1241, 1247
MalI	GATC	3 cut(s)	738, 798, 1125
MboI	GATC	3 cut(s)	736, 796, 1123
MboII	GAAGA	9 cut(s)	302, 366, 436, 854, 862, 890, 965, 1122, 1211
MflI	RGATCY	3 cut(s)	736, 796, 1123
MhlI	GDGCHC	1 cut(s)	1174
MluCI	AATT	5 cut(s)	473, 521, 815, 1116, 1156
MlyI	GAGTC	3 cut(s)	10, 782, 1186
MmeI	TCCRAC	2 cut(s)	764, 1058
MseI	TTAA	3 cut(s)	33, 267, 915
MspA1I	CMGCKG	1 cut(s)	992
MspR9I	CCNGG	4 cut(s)	50, 504, 604, 1182
MvaI	CCWGG	4 cut(s)	50, 504, 604, 1182
MvnI	CGCG	1 cut(s)	1276
MwoI	GCNNNNNNNGC	5 cut(s)	478, 1001, 1013, 1025, 1234
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	736, 796, 1123
NlaIII	CATG	6 cut(s)	203, 467, 643, 811, 934, 973
NlaIV	GGNNCC	4 cut(s)	140, 258, 667, 738
NmuCI	GTSAC	4 cut(s)	13, 923, 1189, 1247
NsbI	TGCGCA	1 cut(s)	996
NspI	RCATGY	2 cut(s)	203, 643
PaeI	GCATGC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	898
PciSI	GCTCTTC	1 cut(s)	948
PfeI	GAWTC	5 cut(s)	110, 167, 371, 413, 614
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	2 cut(s)	48, 502
PkrI	GCNGC	9 cut(s)	100, 205, 364, 835, 976, 991, 994, 1006, 1018
PleI	GAGTC	3 cut(s)	10, 781, 1186
PpsI	GAGTC	3 cut(s)	10, 781, 1186
Ppu21I	YACGTR	1 cut(s)	623
Psp6I	CCWGG	4 cut(s)	48, 502, 602, 1180
PspEI	GGTNACC	2 cut(s)	923, 1241
PspGI	CCWGG	4 cut(s)	48, 502, 602, 1180
PspN4I	GGNNCC	4 cut(s)	140, 258, 667, 738
PspPI	GGNCC	3 cut(s)	256, 782, 1026
PsrI	GAACNNNNNNTAC	2 cut(s)	616, 648
PstI	CTGCAG	2 cut(s)	103, 1021
PsuI	RGATCY	3 cut(s)	736, 796, 1123
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	2 cut(s)	163, 1220
RsaNI	GTAC	2 cut(s)	162, 1219
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	3 cut(s)	33, 267, 915
SatI	GCNGC	9 cut(s)	99, 204, 363, 834, 975, 990, 993, 1005, 1017
Sau3AI	GATC	3 cut(s)	736, 796, 1123
Sau96I	GGNCC	3 cut(s)	256, 782, 1026
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	3 cut(s)	10, 782, 1186
ScrFI	CCNGG	4 cut(s)	50, 504, 604, 1182
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	6 cut(s)	313, 349, 697, 902, 976, 1224
SfcI	CTRYAG	3 cut(s)	99, 417, 1017
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	5 cut(s)	473, 521, 815, 1116, 1156
SsiI	CCGC	3 cut(s)	362, 1228, 1274
SspMI	CTAG	4 cut(s)	21, 119, 443, 777
StyD4I	CCNGG	4 cut(s)	48, 502, 602, 1180
TaaI	ACNGT	3 cut(s)	421, 867, 1247
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	1 cut(s)	170
TasI	AATT	5 cut(s)	473, 521, 815, 1116, 1156
TatI	WGTACW	2 cut(s)	161, 1218
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	5 cut(s)	110, 167, 371, 413, 614
Tru1I	TTAA	3 cut(s)	33, 267, 915
Tru9I	TTAA	3 cut(s)	33, 267, 915
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	4 cut(s)	13, 923, 1189, 1247
TseI	GCWGC	8 cut(s)	98, 203, 833, 974, 989, 992, 1004, 1016
Tsp45I	GTSAC	4 cut(s)	13, 923, 1189, 1247
TspDTI	ATGAA	7 cut(s)	33, 303, 576, 738, 744, 891, 958
TspRI	CASTG	1 cut(s)	426
Van91I	CCANNNNNTGG	1 cut(s)	746
XapI	RAATTY	3 cut(s)	521, 815, 1116
XceI	RCATGY	2 cut(s)	203, 643
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	4 cut(s)	21, 119, 443, 777
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.