Rorug01G0009400

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007525
Physical Location & Seq
Forward (+)
1740481 .. 1741991
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0009400.1

Sequence Viewer

Length: 1101 bp
ATGAGGGTAGTGTTGATCGCCGTCGCTCTATTCTGCGCCATTGTTTCAACCACCGTTGTTGATTCCTGCTTACCAACAGACCTGGCAGCACTCAAAGCCGTCAAGGCCTCACTCACCGAATCCAAACTCGGCCTCTTCAACACATGGTCCGGCACCGACTGCTGCCTCAACTGGCACGGCGTCAGCTGCGACCCTTCAACTCGCCGTGTCGTCGACATTAACCTCCGCGGCGAGTCCGAGGACCCCATTCTCTCCAAGTCCGGCCAGTCCGGCTTCATGTCCGGCTCCATTGCCCCCGAGATTTGTAACCTCGACAGCCTCACCACCCTCGTCCTCGCCGACTGGAAGGGAATCACCGGCAACATCCCCCAATGCCTCACCTTCCTCTCTTCCCTGCGAGTCCTCGACCTCATCGGAAACAAAATCACCGGCGTTATTCCTGCCGATATCGGCAAGCTGAAGATGCTCAGAGTCCTCAACCTTGCCGACAACCAGATCTCCGGCGAGATTCCGGCCAGCATGATCAACCTCGCCGGGTTAATGCACCTGGACCTCCGCAACAACAGACTCTCAGGCGAAATTCCGGCCGGATTTTCGAAGCTACAAATGTTGAGCAGAGCATTGCTGAGCGGGAACCAACTCACCGGATCTATCCCCGAGTCCATCGGCAACATGCCTCGCTTAGCTGACCTGGACCTGTCGAGGAACCAGATCTCAGGTTCGATACCAGACAGTCTCGGAAAAATGCGGGTTCTGTCGACACTCAACTTGGACGGAAACTCAATTTCCGGTCAGTTACCGTCGGTGTTGTTGAGCAACCACGGTTTGGGTATCCTGAACTTGAGCCGGAACAGCATTGGGGGCAACATCCCTGACGTGTTTCACGGAAATTCTTACTTCATGGCTCTGGATTTGTCGTACAACAATTTGAAGGGAGCGATACCAGGTTCGCTGTCGTCGGCGAAGTATATCGGACACCTGGATCTGAGCCACAATCACCTTTGCGGGAACATTCCGGTGGGTGATCCGTTCGATCATATGGAAGAGTCGTCGTTTGCCAACAACGATTGTCTCTGCGGGAATCCGTTGAAGACTTGTTGA

Protein Analysis

366

Amino Acids

38.87

Weight (kDa)

5.88

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 25 - 64 7.7e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 99 - 205 3.4e-11 Leucine-rich repeat region
LRR_8 PF13855 106 - 166 1.3e-07 Leucine rich repeat
LRR_8 PF13855 209 - 262 4.8e-08 Leucine rich repeat
LRR_8 PF13855 276 - 334 2.1e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 630
AccI GTMKAC 2 cut(s) 213, 758
AccII CGCG 1 cut(s) 228
AciI CCGC 7 cut(s) 226, 228, 556, 630, 748, 1005, 1077
AclWI GGATC 3 cut(s) 655, 990, 1019
AcoI YGGCCR 3 cut(s) 262, 513, 585
AcsI RAATTY 2 cut(s) 579, 889
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 920
AfiI CCNNNNNNNGG 1 cut(s) 826
AflIII ACRYGT 1 cut(s) 876
AgsI TTSAA 5 cut(s) 48, 139, 198, 931, 1090
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 5 cut(s) 81, 546, 690, 943, 978
AluBI AGCT 4 cut(s) 186, 457, 601, 686
AluI AGCT 4 cut(s) 186, 457, 601, 686
Alw26I GTCTC 2 cut(s) 740, 1076
AlwI GGATC 3 cut(s) 655, 990, 1019
Ama87I CYCGRG 2 cut(s) 296, 656
AoxI GGCC 5 cut(s) 105, 130, 262, 513, 585
ApeKI GCWGC 3 cut(s) 86, 162, 186
ApoI RAATTY 2 cut(s) 579, 889
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 147, 241, 550, 694
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 8 cut(s) 106, 313, 346, 370, 418, 634, 989, 1034
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 2 cut(s) 296, 656
AvaII GGWCC 4 cut(s) 147, 241, 550, 694
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 1097
BbvI GCAGC 3 cut(s) 98, 149, 173
BccI CCATC 1 cut(s) 671
BceAI ACGGC 4 cut(s) 5, 83, 189, 193
BciT130I CCWGG 5 cut(s) 83, 548, 692, 945, 980
BciVI GTATCC 1 cut(s) 842
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 740, 1076
BfuI GTATCC 1 cut(s) 842
BglI GCCNNNNNGGC 2 cut(s) 104, 270
BglII AGATCT 2 cut(s) 495, 711
BisI GCNGC 4 cut(s) 87, 163, 187, 229
BlpI GCTNAGC 2 cut(s) 626, 682
BlsI GCNGC 4 cut(s) 88, 164, 188, 230
Bme1390I CCNGG 6 cut(s) 83, 535, 548, 692, 945, 980
Bme18I GGWCC 4 cut(s) 147, 241, 550, 694
BmeT110I CYCGRG 2 cut(s) 296, 656
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 4 cut(s) 147, 241, 550, 694
BmiI GGNNCC 5 cut(s) 154, 243, 286, 635, 707
BmrFI CCNGG 6 cut(s) 83, 535, 548, 692, 945, 980
BmsI GCATC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 1097
Bpu1102I GCTNAGC 2 cut(s) 626, 682
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 862
BpuMI CCSGG 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 226, 237, 820
BsaWI WCCGGW 3 cut(s) 644, 788, 1015
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 826
Bse118I RCCGGY 2 cut(s) 356, 428
Bse1I ACTGG 3 cut(s) 176, 265, 347
Bse3DI GCAATG 2 cut(s) 288, 620
BseBI CCWGG 5 cut(s) 83, 548, 692, 945, 980
BseDI CCNNGG 3 cut(s) 226, 237, 820
BseGI GGATG 2 cut(s) 363, 867
BseLI CCNNNNNNNGG 1 cut(s) 826
BseMI GCAATG 2 cut(s) 288, 620
BseMII CTCAG 5 cut(s) 481, 585, 617, 729, 977
BseNI ACTGG 3 cut(s) 176, 265, 347
BseX3I CGGCCG 1 cut(s) 585
BseXI GCAGC 3 cut(s) 98, 149, 173
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 588
BshFI GGCC 5 cut(s) 107, 132, 264, 515, 587
BshNI GGYRCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 588
BsiHKCI CYCGRG 2 cut(s) 296, 656
BslI CCNNNNNNNGG 1 cut(s) 826
BsmAI GTCTC 2 cut(s) 740, 1076
BsnI GGCC 5 cut(s) 107, 132, 264, 515, 587
BsoBI CYCGRG 2 cut(s) 296, 656
Bsp119I TTCGAA 1 cut(s) 596
Bsp143I GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
Bsp1720I GCTNAGC 2 cut(s) 626, 682
BspACI CCGC 7 cut(s) 226, 228, 556, 630, 748, 1005, 1077
BspANI GGCC 5 cut(s) 107, 132, 264, 515, 587
BspCNI CTCAG 5 cut(s) 480, 584, 618, 728, 978
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 5 cut(s) 154, 243, 286, 635, 707
BspPI GGATC 3 cut(s) 655, 990, 1019
BspT104I TTCGAA 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 630
BsrDI GCAATG 2 cut(s) 288, 620
BsrFI RCCGGY 2 cut(s) 356, 428
BsrI ACTGG 3 cut(s) 176, 265, 347
BssAI RCCGGY 2 cut(s) 356, 428
BssECI CCNNGG 3 cut(s) 226, 237, 820
BssMI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 5 cut(s) 83, 548, 692, 945, 980
Bst4CI ACNGT 4 cut(s) 55, 734, 801, 824
Bst6I CTCTTC 3 cut(s) 140, 394, 1038
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 455, 517
BstDEI CTNAG 6 cut(s) 467, 571, 626, 682, 715, 986
BstDSI CCRYGG 2 cut(s) 226, 820
BstF5I GGATG 2 cut(s) 363, 867
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 8 cut(s) 18, 498, 525, 650, 714, 985, 1027, 1036
BstMAI GTCTC 2 cut(s) 740, 1076
BstMBI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
BstMCI CGRYCG 1 cut(s) 588
BstMWI GCNNNNNNNGC 8 cut(s) 95, 104, 159, 186, 270, 463, 852, 861
BstNI CCWGG 5 cut(s) 83, 548, 692, 945, 980
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 6 cut(s) 81, 533, 546, 690, 943, 978
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 98, 149, 173
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 4 cut(s) 495, 647, 711, 982
BstYI RGATCY 4 cut(s) 495, 647, 711, 982
BstZI CGGCCG 1 cut(s) 585
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 5 cut(s) 107, 132, 264, 515, 587
BtgI CCRYGG 2 cut(s) 226, 820
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 363, 867
Cac8I GCNNGC 2 cut(s) 455, 517
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 2 cut(s) 356, 428
Cfr13I GGNCC 4 cut(s) 147, 241, 550, 694
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 943
Csp6I GTAC 1 cut(s) 919
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviAII CATG 5 cut(s) 144, 277, 520, 673, 901
CviQI GTAC 1 cut(s) 919
DdeI CTNAG 6 cut(s) 467, 571, 626, 682, 715, 986
DpnI GATC 8 cut(s) 17, 497, 524, 649, 713, 984, 1026, 1035
DpnII GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
EaeI YGGCCR 3 cut(s) 262, 513, 585
EagI CGGCCG 1 cut(s) 585
Eam1104I CTCTTC 3 cut(s) 140, 394, 1038
EarI CTCTTC 3 cut(s) 140, 394, 1038
EclXI CGGCCG 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 107
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 4 cut(s) 147, 241, 550, 694
Eco52I CGGCCG 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 479
Eco88I CYCGRG 2 cut(s) 296, 656
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 5 cut(s) 81, 546, 690, 943, 978
EcoRV GATATC 1 cut(s) 448
FaeI CATG 5 cut(s) 147, 280, 523, 676, 904
FaiI YATR 8 cut(s) 145, 278, 521, 674, 902, 969, 1038, 1040
FatI CATG 5 cut(s) 143, 276, 519, 672, 900
FauI CCCGC 4 cut(s) 623, 741, 998, 1070
FauNDI CATATG 1 cut(s) 1038
FbaI TGATCA 1 cut(s) 522
FblI GTMKAC 2 cut(s) 213, 758
Fnu4HI GCNGC 4 cut(s) 87, 163, 187, 229
FokI GGATG 2 cut(s) 350, 854
Fsp4HI GCNGC 4 cut(s) 87, 163, 187, 229
GlaI GCGC 1 cut(s) 37
GluI GCNGC 4 cut(s) 87, 163, 187, 229
HaeIII GGCC 5 cut(s) 107, 132, 264, 515, 587
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 5 cut(s) 147, 280, 523, 676, 904
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 2 cut(s) 214, 759
HindII GTYRAC 2 cut(s) 214, 759
HphI GGTGA 8 cut(s) 106, 313, 346, 370, 418, 634, 989, 1034
Hpy166II GTNNAC 2 cut(s) 214, 759
Hpy188I TCNGA 6 cut(s) 238, 416, 470, 740, 974, 987
Hpy188III TCNNGA 2 cut(s) 835, 908
Hpy8I GTNNAC 2 cut(s) 214, 759
Hpy99I CGWCG 5 cut(s) 26, 215, 805, 961, 1054
HpyAV CCTTC 4 cut(s) 204, 340, 391, 925
HpyCH4III ACNGT 4 cut(s) 55, 734, 801, 824
HpyCH4IV ACGT 1 cut(s) 876
HpyCH4V TGCA 1 cut(s) 544
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 104, 159, 186, 270, 463, 852, 861
HpyF3I CTNAG 6 cut(s) 467, 571, 626, 682, 715, 986
HpySE526I ACGT 1 cut(s) 876
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 5 cut(s) 147, 280, 523, 676, 904
HspAI GCGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 522
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
LmnI GCTCC 2 cut(s) 290, 935
Lsp1109I GCAGC 3 cut(s) 98, 149, 173
LweI GCATC 1 cut(s) 453
MabI ACCWGGT 1 cut(s) 943
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 2 cut(s) 305, 795
MalI GATC 8 cut(s) 17, 497, 524, 649, 713, 984, 1026, 1035
MbiI CCGCTC 1 cut(s) 630
MboI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
MboII GAAGA 4 cut(s) 127, 381, 472, 1055
MflI RGATCY 4 cut(s) 495, 647, 711, 982
MluCI AATT 4 cut(s) 579, 783, 889, 925
MlyI GAGTC 6 cut(s) 242, 408, 480, 561, 668, 1055
MseI TTAA 2 cut(s) 219, 539
MslI CAYNNNNRTG 1 cut(s) 1016
MspA1I CMGCKG 2 cut(s) 186, 228
MspR9I CCNGG 6 cut(s) 83, 535, 548, 692, 945, 980
MvaI CCWGG 5 cut(s) 83, 548, 692, 945, 980
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 8 cut(s) 95, 104, 159, 186, 270, 463, 852, 861
NciI CCSGG 1 cut(s) 535
NdeI CATATG 1 cut(s) 1038
NdeII GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
NlaIII CATG 5 cut(s) 147, 280, 523, 676, 904
NlaIV GGNNCC 5 cut(s) 154, 243, 286, 635, 707
NmeAIII GCCGAG 1 cut(s) 108
NspI RCATGY 1 cut(s) 676
NspV TTCGAA 1 cut(s) 596
PceI AGGCCT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 5 cut(s) 62, 119, 351, 508, 1081
PflMI CCANNNNNTGG 1 cut(s) 826
PkrI GCNGC 4 cut(s) 88, 164, 188, 230
PleI GAGTC 6 cut(s) 241, 407, 479, 561, 667, 1054
PpsI GAGTC 6 cut(s) 241, 407, 479, 561, 667, 1054
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 5 cut(s) 81, 546, 690, 943, 978
PspGI CCWGG 5 cut(s) 81, 546, 690, 943, 978
PspN4I GGNNCC 5 cut(s) 154, 243, 286, 635, 707
PspPI GGNCC 4 cut(s) 147, 241, 550, 694
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 4 cut(s) 495, 647, 711, 982
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 920
RsaNI GTAC 1 cut(s) 919
RseI CAYNNNNRTG 1 cut(s) 1016
SacII CCGCGG 1 cut(s) 229
SalI GTCGAC 2 cut(s) 212, 757
SaqAI TTAA 2 cut(s) 219, 539
SatI GCNGC 4 cut(s) 87, 163, 187, 229
Sau3AI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
Sau96I GGNCC 4 cut(s) 147, 241, 550, 694
SchI GAGTC 6 cut(s) 242, 408, 480, 561, 668, 1055
ScrFI CCNGG 6 cut(s) 83, 535, 548, 692, 945, 980
SexAI ACCWGGT 1 cut(s) 943
SfaNI GCATC 1 cut(s) 453
Sfr303I CCGCGG 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 596
SgrAI CRCCGGYG 1 cut(s) 428
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 4 cut(s) 147, 241, 550, 694
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
Sse9I AATT 4 cut(s) 579, 783, 889, 925
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 7 cut(s) 226, 228, 556, 630, 748, 1005, 1077
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 6 cut(s) 81, 533, 546, 690, 943, 978
TaaI ACNGT 4 cut(s) 55, 734, 801, 824
TaiI ACGT 1 cut(s) 879
TaqI TCGA 8 cut(s) 213, 312, 405, 596, 701, 722, 758, 1032
TasI AATT 4 cut(s) 579, 783, 889, 925
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 5 cut(s) 62, 119, 351, 508, 1081
Tru1I TTAA 2 cut(s) 219, 539
Tru9I TTAA 2 cut(s) 219, 539
TseI GCWGC 3 cut(s) 86, 162, 186
TspDTI ATGAA 2 cut(s) 265, 889
TspGWI ACGGA 4 cut(s) 789, 900, 1017, 1074
Van91I CCANNNNNTGG 1 cut(s) 826
VpaK11BI GGWCC 4 cut(s) 147, 241, 550, 694
XapI RAATTY 2 cut(s) 579, 889
XceI RCATGY 1 cut(s) 676
XmiI GTMKAC 2 cut(s) 213, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.