Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Forward (+)

2112941 .. 2118470

Gene Structure 5530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG014200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAAAAGCAGTTCCTCTGCAGTGGTTGCTAAATTGGGTGAACATCTTGATGCGAATTCACAAATGGAACTTGTTGGTCACTCAATTGTTTTGACATCATATCCATATTCAGATCCACAATACAGTGGGATGTTGACTCATTATCGGCCACAAGCTATGGTGCCCCCTCAATTCTATGGCTTGCATCATGGTAGAATGCCCTTGCCCTTTGAAATGGAAGAGGAGCCTGTTTATGTAAATGCCAAGCAATACCATGGTATTTTGAGACGAAGACAGTCACGTGCTAAAGCTGAACTTGAAAGGAAGCTTATAAAAGTTAGGAAGCCATATCTTCATGAGTCTCGTCACCAGCATGCGTTGAGGAGAGCAAGGGGTTGTGGAGGCCGTTTCCTTAATACAAAGAAGCAAGATGATAGTGATGCAAATTCCTCAGCAGAAAAAACCATCAATTTGGATGCAAACTTTTCACCCAAATCTGCCAAATCTGGTTTTGAGTGCTTTCCTAATGATAGCAACGGCAATTTCGTTTCCTCCAATGTCCAGCAAGAAGGATCAGGTTCATGGTTCAGGACACACAATAACCACACACTCTCCAACGGTAATGGCAATGGCCATGCCCCATCATCAACATATCGTACAACATTTAATGACGGCACGGAAGGTGTTTTCCTTGGTCAACAGAAGGAAACAATGCAGTTGAATGGATCCTCTCGTGGGGCCATTCACAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

244

Amino Acids

27.24

Weight (kDa)

9.49

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	75 - 130	7.7e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	160
AclWI	GGATC	4 cut(s)	107, 559, 699, 712
AcoI	YGGCCR	2 cut(s)	146, 610
AcsI	RAATTY	2 cut(s)	55, 424
AcvI	CACGTG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	1 cut(s)	714
AgsI	TTSAA	3 cut(s)	212, 299, 700
AluBI	AGCT	3 cut(s)	155, 290, 307
AluI	AGCT	3 cut(s)	155, 290, 307
Alw26I	GTCTC	2 cut(s)	259, 345
AlwI	GGATC	4 cut(s)	107, 559, 699, 712
AoxI	GGCC	4 cut(s)	146, 382, 610, 717
ApoI	RAATTY	2 cut(s)	55, 424
AspS9I	GGNCC	1 cut(s)	717
AsuHPI	GGTGA	3 cut(s)	50, 338, 459
BaeGI	GKGCMC	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	612
BamHI	GGATCC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	711
BbrPI	CACGTG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	452, 628
BceAI	ACGGC	3 cut(s)	369, 532, 667
BcoDI	GTCTC	2 cut(s)	259, 345
BfmI	CTRYAG	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	717
BmiI	GGNNCC	4 cut(s)	162, 225, 706, 718
BmsI	GCATC	4 cut(s)	40, 193, 409, 445
BpiI	GAAGAC	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	253, 670
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	613
BseDI	CCNNGG	2 cut(s)	253, 670
BseGI	GGATG	2 cut(s)	135, 460
BseLI	CCNNNNNNNGG	1 cut(s)	714
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	2 cut(s)	236, 376
BseSI	GKGCMC	1 cut(s)	165
BshFI	GGCC	4 cut(s)	148, 384, 612, 719
BshNI	GGYRCC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	714
BsmAI	GTCTC	2 cut(s)	259, 345
BsmBI	CGTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	4 cut(s)	148, 384, 612, 719
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	112, 551, 704
Bsp19I	CCATGG	1 cut(s)	253
BspANI	GGCC	4 cut(s)	148, 384, 612, 719
BspCNI	CTCAG	1 cut(s)	443
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	4 cut(s)	162, 225, 706, 718
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	4 cut(s)	107, 559, 699, 712
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	613
BssECI	CCNNGG	2 cut(s)	253, 670
BssMI	GATC	3 cut(s)	112, 551, 704
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	2 cut(s)	253, 670
Bst2BI	CACGAG	1 cut(s)	711
Bst4CI	ACNGT	4 cut(s)	125, 276, 599, 728
Bst6I	CTCTTC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	182, 354
BstDEI	CTNAG	1 cut(s)	430
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	135, 460
BstKTI	GATC	3 cut(s)	115, 554, 707
BstMAI	GTCTC	2 cut(s)	259, 345
BstMBI	GATC	3 cut(s)	112, 551, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	2 cut(s)	112, 704
BstXI	CCANNNNNNTGG	1 cut(s)	451
BstYI	RGATCY	2 cut(s)	112, 704
BsuRI	GGCC	4 cut(s)	148, 384, 612, 719
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	135, 460
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 130
Cac8I	GCNNGC	2 cut(s)	182, 354
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	717
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	6 cut(s)	188, 254, 335, 353, 561, 614
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	3 cut(s)	114, 553, 706
DpnII	GATC	3 cut(s)	112, 551, 704
EaeI	YGGCCR	2 cut(s)	146, 610
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	253, 670
Eco72I	CACGTG	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	253, 670
ErhI	CCWWGG	2 cut(s)	253, 670
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	6 cut(s)	191, 257, 338, 356, 564, 617
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	6 cut(s)	187, 253, 334, 352, 560, 613
FokI	GGATG	2 cut(s)	142, 467
HaeIII	GGCC	4 cut(s)	148, 384, 612, 719
Hin1II	CATG	6 cut(s)	191, 257, 338, 356, 564, 617
HincII	GTYRAC	2 cut(s)	135, 677
HindII	GTYRAC	2 cut(s)	135, 677
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	136, 338
HphI	GGTGA	3 cut(s)	50, 338, 459
Hpy166II	GTNNAC	3 cut(s)	41, 135, 677
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	47, 335, 568
Hpy8I	GTNNAC	3 cut(s)	41, 135, 677
HpyAV	CCTTC	3 cut(s)	542, 653, 676
HpyCH4III	ACNGT	4 cut(s)	125, 276, 599, 728
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	5 cut(s)	20, 184, 422, 458, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	6 cut(s)	191, 257, 338, 356, 564, 617
Kzo9I	GATC	3 cut(s)	112, 551, 704
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	240, 362, 471, 540, 553, 554
LweI	GCATC	4 cut(s)	40, 193, 409, 445
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	77, 276, 344
MalI	GATC	3 cut(s)	114, 553, 706
MboI	GATC	3 cut(s)	112, 551, 704
MboII	GAAGA	3 cut(s)	230, 282, 323
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	2 cut(s)	112, 704
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	7 cut(s)	32, 55, 84, 170, 424, 448, 520
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	130, 347
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	8 cut(s)	25, 177, 214, 354, 374, 439, 541, 718
Mox20I	TGGCCA	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	2 cut(s)	393, 645
MslI	CAYNNNNRTG	2 cut(s)	48, 351
Msp20I	TGGCCA	1 cut(s)	612
MunI	CAATTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	112, 551, 704
NlaIII	CATG	6 cut(s)	191, 257, 338, 356, 564, 617
NlaIV	GGNNCC	4 cut(s)	162, 225, 706, 718
NmuCI	GTSAC	3 cut(s)	77, 276, 344
NspI	RCATGY	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	356
PagI	TCATGA	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	201
PleI	GAGTC	2 cut(s)	130, 346
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	2 cut(s)	130, 346
Ppu21I	YACGTR	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	311
PspCI	CACGTG	1 cut(s)	281
PspN4I	GGNNCC	4 cut(s)	162, 225, 706, 718
PspPI	GGNCC	1 cut(s)	717
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	112, 704
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
RseI	CAYNNNNRTG	2 cut(s)	48, 351
SaqAI	TTAA	2 cut(s)	393, 645
Sau3AI	GATC	3 cut(s)	112, 551, 704
Sau96I	GGNCC	1 cut(s)	717
SchI	GAGTC	2 cut(s)	130, 347
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	6 cut(s)	157, 283, 292, 309, 559, 664
SfaNI	GCATC	4 cut(s)	40, 193, 409, 445
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	2 cut(s)	48, 351
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	7 cut(s)	32, 55, 84, 170, 424, 448, 520
StyI	CCWWGG	2 cut(s)	253, 670
TaaI	ACNGT	4 cut(s)	125, 276, 599, 728
TaiI	ACGT	1 cut(s)	283
TasI	AATT	7 cut(s)	32, 55, 84, 170, 424, 448, 520
Tru1I	TTAA	2 cut(s)	393, 645
Tru9I	TTAA	2 cut(s)	393, 645
TscAI	CASTG	2 cut(s)	27, 130
TseFI	GTSAC	3 cut(s)	77, 276, 344
Tsp45I	GTSAC	3 cut(s)	77, 276, 344
TspDTI	ATGAA	3 cut(s)	17, 323, 549
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	2 cut(s)	27, 130
XapI	RAATTY	2 cut(s)	55, 424
XceI	RCATGY	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.