FvH4_7g02750

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007291
Physical Location & Seq
Forward (+)
3053671 .. 3057107
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02750.t2

Sequence Viewer

Length: 786 bp
ATGGGGGATGTGGGAGAAGAACCAAAGTGGAAGCGAAGTGTTCCAAAGAGAACCAGCTCATCAAAGTCTTCTTCTTCTTCTTTGTCTTGTCTCATAAACAAGCTAGATGATGGTTGCCTCATGCACATCTTTAGCTTCCTCTCTCCTATCCCAGATCGGTATAACACCGCCCTGGTTTGCCACAGATGGCTTTTCTTGGCATGTCACCCTCGCTTGTGGCTGAGAGTTGAACGGTCTATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGTATTGAGACAGCTGTTGCTGCCGCAAGGCCTGGCGACACTATTCTAATTTCAGCTGGGGGCAGGCATCTTGCTTCTGATATTCAAATAAAAAAGCCACTTTGCCTGATTGGCGGAGGTGAGCTACCGGATGAGACGACCCTCATTTGCTCTCGAGGTGCAGACAGTGCACTGGAGTTCCTGTCCACCTGCAAATTGGCAAACTTAACAGTGAAGACAGAGCTGGGTTGTTGTTTGCTTCATAGAAGTGGAAGGCTCACAATAGATGGGTGTGTGCTTCAGTGCGAGTCAAATCCTCTAGACTTCCTTTCAGTCCCCATTGTGAGTACGGCAAGTGCGCAAACTGTGTTGTCTCCATCGGTGAAGGGTTATAAGGATGGTGTTTCTGTTTCTCGGACTCGAATTGAAGGAGGTGCCAAAGCTGTTTCAACTAGTGGAGACCTGACTTTGCAGCGAGTCCGAGTCATTTATGCTCGGACGTCTCTCGTTTTCTGGTTTGATATGGAGCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

262

Amino Acids

28.35

Weight (kDa)

8.48

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 40 - 76 7.8e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AarI CACCTGC 1 cut(s) 467
AatII GACGTC 1 cut(s) 752
Acc16I TGCGCA 1 cut(s) 609
Acc36I ACCTGC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 683
AciI CCGC 3 cut(s) 168, 294, 384
AclWI GGATC 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 2 cut(s) 261, 749
AfaI GTAC 1 cut(s) 598
AgsI TTSAA 4 cut(s) 230, 356, 677, 699
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 3 cut(s) 171, 256, 301
AluBI AGCT 8 cut(s) 57, 103, 135, 284, 326, 394, 493, 692
AluI AGCT 8 cut(s) 57, 103, 135, 284, 326, 394, 493, 692
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 6 cut(s) 95, 272, 398, 627, 702, 756
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 438
ApeKI GCWGC 2 cut(s) 290, 721
AspLEI GCGC 1 cut(s) 610
AsuHPI GGTGA 3 cut(s) 197, 401, 643
AvaI CYCGRG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 683
BbsI GAAGAC 3 cut(s) 60, 256, 491
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 277, 733
BccI CCATC 5 cut(s) 104, 180, 530, 634, 641
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 3 cut(s) 173, 258, 303
BcoDI GTCTC 6 cut(s) 95, 272, 398, 627, 702, 756
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 3 cut(s) 104, 569, 702
BfuAI ACCTGC 1 cut(s) 467
BglI GCCNNNNNGGC 1 cut(s) 381
BisI GCNGC 3 cut(s) 291, 294, 722
BlsI GCNGC 3 cut(s) 292, 295, 723
Bme1390I CCNGG 3 cut(s) 173, 258, 303
BmeT110I CYCGRG 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 255, 685
BmrFI CCNGG 3 cut(s) 173, 258, 303
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 3 cut(s) 60, 256, 491
BpmI CTGGAG 1 cut(s) 464
BsaHI GRCGYC 2 cut(s) 261, 749
BsaI GGTCTC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bse1I ACTGG 2 cut(s) 270, 447
BseBI CCWGG 3 cut(s) 173, 258, 303
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 13, 406, 652
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 270, 447
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 2 cut(s) 277, 733
BseYI CCCAGC 2 cut(s) 326, 493
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 569
BsmAI GTCTC 6 cut(s) 95, 272, 398, 627, 702, 756
BsmBI CGTCTC 2 cut(s) 398, 756
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 702
BsoBI CYCGRG 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 2 cut(s) 154, 244
BspACI CCGC 3 cut(s) 168, 294, 384
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 255, 685
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 702
BsrI ACTGG 2 cut(s) 270, 447
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 154, 244
BssNI GRCGYC 2 cut(s) 261, 749
Bst2UI CCWGG 3 cut(s) 173, 258, 303
Bst4CI ACNGT 4 cut(s) 234, 437, 481, 616
BstACI GRCGYC 2 cut(s) 261, 749
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 3 cut(s) 13, 406, 652
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 2 cut(s) 157, 247
BstMAI GTCTC 6 cut(s) 95, 272, 398, 627, 702, 756
BstMBI GATC 2 cut(s) 154, 244
BstMWI GCNNNNNNNGC 3 cut(s) 290, 381, 437
BstNI CCWGG 3 cut(s) 173, 258, 303
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 171, 256, 301
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 277, 733
BstV2I GAAGAC 3 cut(s) 60, 256, 491
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 3 cut(s) 13, 406, 652
BtsIMutI CAGTG 4 cut(s) 440, 442, 486, 557
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 1 cut(s) 610
CseI GACGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 597
CviAII CATG 2 cut(s) 121, 201
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 1 cut(s) 221
DpnI GATC 2 cut(s) 156, 246
DpnII GATC 2 cut(s) 154, 244
EciI GGCGGA 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 702
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 423
EcoRII CCWGG 3 cut(s) 171, 256, 301
Esp3I CGTCTC 2 cut(s) 398, 756
FaeI CATG 2 cut(s) 124, 204
FaiI YATR 8 cut(s) 95, 122, 162, 202, 513, 642, 741, 773
FaqI GGGAC 1 cut(s) 569
FatI CATG 2 cut(s) 120, 200
Fnu4HI GCNGC 3 cut(s) 291, 294, 722
FokI GGATG 3 cut(s) 20, 413, 659
Fsp4HI GCNGC 3 cut(s) 291, 294, 722
FspBI CTAG 3 cut(s) 104, 569, 702
FspI TGCGCA 1 cut(s) 609
GlaI GCGC 1 cut(s) 609
GluI GCNGC 3 cut(s) 291, 294, 722
GsaI CCCAGC 2 cut(s) 330, 497
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 610
Hin1I GRCGYC 2 cut(s) 261, 749
Hin1II CATG 2 cut(s) 124, 204
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HinfI GANTC 4 cut(s) 557, 667, 726, 732
HpaII CCGG 1 cut(s) 398
HphI GGTGA 3 cut(s) 197, 401, 643
Hpy166II GTNNAC 2 cut(s) 440, 456
Hpy188I TCNGA 4 cut(s) 349, 666, 731, 747
Hpy188III TCNNGA 2 cut(s) 423, 569
Hpy8I GTNNAC 2 cut(s) 440, 456
HpyAV CCTTC 3 cut(s) 516, 628, 671
HpyCH4III ACNGT 4 cut(s) 234, 437, 481, 616
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 5 cut(s) 124, 431, 440, 462, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 381, 437
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 749
Hsp92I GRCGYC 2 cut(s) 261, 749
Hsp92II CATG 2 cut(s) 124, 204
HspAI GCGC 1 cut(s) 608
Kzo9I GATC 2 cut(s) 154, 244
LmnI GCTCC 2 cut(s) 253, 775
Lsp1109I GCAGC 2 cut(s) 277, 733
LweI GCATC 1 cut(s) 346
MaeI CTAG 3 cut(s) 104, 569, 702
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 1 cut(s) 203
MalI GATC 2 cut(s) 156, 246
MboI GATC 2 cut(s) 154, 244
MboII GAAGA 7 cut(s) 29, 60, 63, 66, 69, 256, 496
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 3 cut(s) 318, 464, 672
MlyI GAGTC 4 cut(s) 566, 661, 735, 741
MnlI CCTC 8 cut(s) 128, 149, 219, 380, 419, 422, 576, 674
MseI TTAA 2 cut(s) 240, 476
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 2 cut(s) 284, 326
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 3 cut(s) 173, 258, 303
MvaI CCWGG 3 cut(s) 173, 258, 303
MwoI GCNNNNNNNGC 3 cut(s) 290, 381, 437
NdeII GATC 2 cut(s) 154, 244
NlaIII CATG 2 cut(s) 124, 204
NlaIV GGNNCC 2 cut(s) 255, 685
NmuCI GTSAC 1 cut(s) 203
NsbI TGCGCA 1 cut(s) 609
NspI RCATGY 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 423
PaqCI CACCTGC 1 cut(s) 467
PceI AGGCCT 1 cut(s) 301
PkrI GCNGC 3 cut(s) 292, 295, 723
PleI GAGTC 4 cut(s) 565, 661, 734, 740
PpsI GAGTC 4 cut(s) 565, 661, 734, 740
PsiI TTATAA 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 171, 256, 301
PspFI CCCAGC 2 cut(s) 326, 493
PspGI CCWGG 3 cut(s) 171, 256, 301
PspN4I GGNNCC 2 cut(s) 255, 685
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 2 cut(s) 284, 326
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 2 cut(s) 240, 476
SatI GCNGC 3 cut(s) 291, 294, 722
Sau3AI GATC 2 cut(s) 154, 244
SchI GAGTC 4 cut(s) 566, 661, 735, 741
ScrFI CCNGG 3 cut(s) 173, 258, 303
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 3 cut(s) 318, 464, 672
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 3 cut(s) 168, 294, 384
SspMI CTAG 3 cut(s) 104, 569, 702
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 3 cut(s) 171, 256, 301
TaaI ACNGT 4 cut(s) 234, 437, 481, 616
TaiI ACGT 1 cut(s) 752
TaqI TCGA 2 cut(s) 424, 670
TasI AATT 3 cut(s) 318, 464, 672
TauI GCSGC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 240, 476
Tru9I TTAA 2 cut(s) 240, 476
TscAI CASTG 4 cut(s) 442, 447, 486, 557
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 290, 721
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 500
TspRI CASTG 4 cut(s) 442, 447, 486, 557
VneI GTGCAC 1 cut(s) 438
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 423
XspI CTAG 3 cut(s) 104, 569, 702
ZraI GACGTC 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.