Rmu_sc0001168.1_g000007

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001168.1
OG0007291
Physical Location & Seq
Forward (+)
22391 .. 25304
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001168.1_g000007.1.cds

Sequence Viewer

Length: 789 bp
atggaggtgggagaagagctgaagcaaccaaagtggaagagaagtgttccaaagagattcagctcaccaaagtcatcttcttctttgtcttgtcttataaacaatcttgatgatggctgcctcatgcacatctttagcttcctctctcctatcccagatcgctataacaccgccctggtttgccacagatggcttttcttggcatgtcaccctcgcttgtggctgcgagttgaacgatcaattaaagatccattggagcctggtgtcttccctagtattgagacagcggttgctgccgcaaggcctggcgacaccattctaatttcagcagggggaaggcatgttgcttctgatattcaaataaaaaagccgctttgcctgattggtggaggtgagctaccagatgagacaaccctcatttgttctcgcggtgcagacagtgcattggagttcctgtccacctgcaaattggccaacttaactgtgaaggcagagctgggttcttgcttgcttcatagaagtggaaggctcacaatagatgggtgtgtgcttcagtgcgagacgaatccgctagacttcctttctgtccccattgtgagtacagcaagtgcgcaaactgtgttgtcttcttcggtgaagtgttataaggatggtgtttctgtttctcggactcgaattgaaggaggtgccaaggctgtttcaactagtggatacctgacattgcagcgagtacgagtcatatatgctcggacgtctctcattttctggtttgatatggagcaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

262

Amino Acids

28.68

Weight (kDa)

8.64

Isoelectric Point (pI)

57.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 98, 645
AarI CACCTGC 1 cut(s) 470
AatII GACGTC 1 cut(s) 755
Acc16I TGCGCA 1 cut(s) 612
Acc36I ACCTGC 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 686
AccII CGCG 1 cut(s) 429
AciI CCGC 6 cut(s) 171, 287, 297, 371, 429, 569
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 2 cut(s) 41, 536
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 2 cut(s) 601, 732
AgsI TTSAA 4 cut(s) 233, 359, 680, 702
AhlI ACTAGT 1 cut(s) 704
AjnI CCWGG 3 cut(s) 174, 259, 304
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 5 cut(s) 19, 63, 138, 397, 496
AluI AGCT 5 cut(s) 19, 63, 138, 397, 496
Alw26I GTCTC 4 cut(s) 275, 401, 554, 759
AlwI GGATC 1 cut(s) 242
AoxI GGCC 2 cut(s) 302, 471
ApeKI GCWGC 4 cut(s) 117, 223, 293, 724
AspLEI GCGC 1 cut(s) 613
AsuHPI GGTGA 4 cut(s) 57, 200, 404, 646
BalI TGGCCA 1 cut(s) 473
BanI GGYRCC 1 cut(s) 686
BbsI GAAGAC 2 cut(s) 259, 618
BbvI GCAGC 4 cut(s) 104, 210, 280, 736
BccI CCATC 4 cut(s) 107, 183, 533, 644
BciT130I CCWGG 3 cut(s) 176, 261, 306
BciVI GTATCC 1 cut(s) 704
BcoDI GTCTC 4 cut(s) 275, 401, 554, 759
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 3 cut(s) 273, 572, 705
BfuAI ACCTGC 1 cut(s) 470
BfuI GTATCC 1 cut(s) 704
BisI GCNGC 6 cut(s) 118, 224, 294, 297, 371, 725
BlsI GCNGC 6 cut(s) 119, 225, 295, 298, 372, 726
Bme1390I CCNGG 3 cut(s) 176, 261, 306
BmiI GGNNCC 2 cut(s) 258, 688
BmrFI CCNGG 3 cut(s) 176, 261, 306
BpiI GAAGAC 2 cut(s) 259, 618
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 2 cut(s) 174, 690
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 3 cut(s) 176, 261, 306
BseDI CCNNGG 2 cut(s) 174, 690
BseGI GGATG 1 cut(s) 655
BseMI GCAATG 1 cut(s) 719
BseXI GCAGC 4 cut(s) 104, 210, 280, 736
BseYI CCCAGC 1 cut(s) 496
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 2 cut(s) 304, 473
BshNI GGYRCC 1 cut(s) 686
BslFI GGGAC 1 cut(s) 572
BsmAI GTCTC 4 cut(s) 275, 401, 554, 759
BsmBI CGTCTC 2 cut(s) 554, 759
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 2 cut(s) 304, 473
Bsp143I GATC 3 cut(s) 157, 236, 247
BspACI CCGC 6 cut(s) 171, 287, 297, 371, 429, 569
BspANI GGCC 2 cut(s) 304, 473
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 258, 688
BspMI ACCTGC 1 cut(s) 470
BspPI GGATC 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 719
BssECI CCNNGG 2 cut(s) 174, 690
BssMI GATC 3 cut(s) 157, 236, 247
BssNI GRCGYC 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 3 cut(s) 176, 261, 306
Bst4CI ACNGT 3 cut(s) 440, 484, 619
Bst6I CTCTTC 2 cut(s) 9, 32
BstACI GRCGYC 1 cut(s) 752
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 509
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 3 cut(s) 160, 239, 250
BstMAI GTCTC 4 cut(s) 275, 401, 554, 759
BstMBI GATC 3 cut(s) 157, 236, 247
BstMWI GCNNNNNNNGC 2 cut(s) 293, 440
BstNI CCWGG 3 cut(s) 176, 261, 306
BstNSI RCATGY 2 cut(s) 207, 344
BstSCI CCNGG 3 cut(s) 174, 259, 304
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 4 cut(s) 104, 210, 280, 736
BstV2I GAAGAC 2 cut(s) 259, 618
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 2 cut(s) 304, 473
BtsCI GGATG 1 cut(s) 655
BtsIMutI CAGTG 2 cut(s) 445, 560
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 509
CfoI GCGC 1 cut(s) 613
Csp6I GTAC 2 cut(s) 600, 731
CspCI CAANNNNNGTGG 2 cut(s) 14, 49
CviAII CATG 3 cut(s) 124, 204, 341
CviQI GTAC 2 cut(s) 600, 731
DpnI GATC 3 cut(s) 159, 238, 249
DpnII GATC 3 cut(s) 157, 236, 247
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 9, 32
EarI CTCTTC 2 cut(s) 9, 32
Eco130I CCWWGG 1 cut(s) 690
Eco147I AGGCCT 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 41, 536
EcoRII CCWGG 3 cut(s) 174, 259, 304
EcoT14I CCWWGG 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 690
Esp3I CGTCTC 2 cut(s) 554, 759
FaeI CATG 3 cut(s) 127, 207, 344
FaqI GGGAC 1 cut(s) 572
FatI CATG 3 cut(s) 123, 203, 340
Fnu4HI GCNGC 6 cut(s) 118, 224, 294, 297, 371, 725
FokI GGATG 1 cut(s) 662
Fsp4HI GCNGC 6 cut(s) 118, 224, 294, 297, 371, 725
FspBI CTAG 3 cut(s) 273, 572, 705
FspI TGCGCA 1 cut(s) 612
GlaI GCGC 1 cut(s) 612
GluI GCNGC 6 cut(s) 118, 224, 294, 297, 371, 725
GsaI CCCAGC 1 cut(s) 500
HaeIII GGCC 2 cut(s) 304, 473
HhaI GCGC 1 cut(s) 613
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 3 cut(s) 127, 207, 344
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HinfI GANTC 4 cut(s) 57, 565, 670, 735
HphI GGTGA 4 cut(s) 57, 200, 404, 646
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 3 cut(s) 352, 669, 750
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 4 cut(s) 330, 481, 519, 674
HpyCH4III ACNGT 3 cut(s) 440, 484, 619
HpyCH4IV ACGT 1 cut(s) 752
HpyCH4V TGCA 5 cut(s) 127, 434, 443, 465, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 440
HpySE526I ACGT 1 cut(s) 752
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 3 cut(s) 127, 207, 344
HspAI GCGC 1 cut(s) 611
Kzo9I GATC 3 cut(s) 157, 236, 247
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 256, 778
Lsp1109I GCAGC 4 cut(s) 104, 210, 280, 736
MaeI CTAG 3 cut(s) 273, 572, 705
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 1 cut(s) 206
MalI GATC 3 cut(s) 159, 238, 249
MboI GATC 3 cut(s) 157, 236, 247
MboII GAAGA 7 cut(s) 26, 49, 69, 72, 259, 618, 621
MflI RGATCY 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 4 cut(s) 240, 321, 467, 675
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 2 cut(s) 664, 744
MnlI CCTC 6 cut(s) 131, 152, 222, 383, 425, 677
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MseI TTAA 2 cut(s) 243, 479
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 3 cut(s) 176, 261, 306
MvaI CCWGG 3 cut(s) 176, 261, 306
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 293, 440
NdeII GATC 3 cut(s) 157, 236, 247
NlaIII CATG 3 cut(s) 127, 207, 344
NlaIV GGNNCC 2 cut(s) 258, 688
NmuCI GTSAC 1 cut(s) 206
NsbI TGCGCA 1 cut(s) 612
NspI RCATGY 2 cut(s) 207, 344
PaqCI CACCTGC 1 cut(s) 470
PceI AGGCCT 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 57, 565
PkrI GCNGC 6 cut(s) 119, 225, 295, 298, 372, 726
PleI GAGTC 2 cut(s) 664, 743
PpsI GAGTC 2 cut(s) 664, 743
PsiI TTATAA 2 cut(s) 98, 645
Psp6I CCWGG 3 cut(s) 174, 259, 304
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 3 cut(s) 174, 259, 304
PspN4I GGNNCC 2 cut(s) 258, 688
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 2 cut(s) 601, 732
RsaNI GTAC 2 cut(s) 600, 731
RseI CAYNNNNRTG 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 243, 479
SatI GCNGC 6 cut(s) 118, 224, 294, 297, 371, 725
Sau3AI GATC 3 cut(s) 157, 236, 247
SchI GAGTC 2 cut(s) 664, 744
ScrFI CCNGG 3 cut(s) 176, 261, 306
SmiMI CAYNNNNRTG 1 cut(s) 519
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 4 cut(s) 240, 321, 467, 675
SseBI AGGCCT 1 cut(s) 304
SsiI CCGC 6 cut(s) 171, 287, 297, 371, 429, 569
SspMI CTAG 3 cut(s) 273, 572, 705
StuI AGGCCT 1 cut(s) 304
StyD4I CCNGG 3 cut(s) 174, 259, 304
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 3 cut(s) 440, 484, 619
TaiI ACGT 1 cut(s) 755
TaqI TCGA 1 cut(s) 673
TasI AATT 4 cut(s) 240, 321, 467, 675
TatI WGTACW 1 cut(s) 599
TauI GCSGC 2 cut(s) 299, 373
TfiI GAWTC 2 cut(s) 57, 565
Tru1I TTAA 2 cut(s) 243, 479
Tru9I TTAA 2 cut(s) 243, 479
TscAI CASTG 2 cut(s) 445, 560
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 4 cut(s) 117, 223, 293, 724
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 503
TspRI CASTG 2 cut(s) 445, 560
XceI RCATGY 2 cut(s) 207, 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XspI CTAG 3 cut(s) 273, 572, 705
ZraI GACGTC 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.