RLG00000014709

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007291
Physical Location & Seq
Forward (+)
56632365 .. 56637747
5383 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014709

Sequence Viewer

Length: 1158 bp
ATGGTGTCTTACTGGCACCCCTATACAGGATTTGTGAAAGTTGGTTTGTACTTGCGTATAGCTTCTGGTCTTCTGGTACCAGAAGCCAAGCTGTTTCTGCATTTGGAGGATTTGCTTTACGTGGTAAAAGCCAAACCCCATGATCGCAGGATGATGTGTGCCTCACCAATTGTGCAAACTAAGTTGAGCCACATCTCATGTGATTCTGAATTTCAGTCAAAGCTTGTGAAAGATGACTCGTTGTCAAAGACCAACAGATGCCGTGAGGTGAGCCATGAAATTGACCAAGGGGACTCGCATATGACAGGAAAGATGAAACTGTGCTTGGAGTTGTTACCATTGGGGCTTTTAAGGGAGACGGAGAAAGGCATGTGCATCGAGGAGGAGATAAAGGTTGAGATCTATGAGGATAACGATAATGCGAGCAAGGACGAGTTTGCGGCTCTGCTCTCGGAGATCCATGAGTACCATAGGAGACATCCAGCTGTACTAGTTGTTGTTGCCAATGAGGAACATGAAGCACTGCTCAAACAGGAGCCACAAGTGGAGAGGTCCAATGAAAACATGATTTGGGAGGTTTATGTTGTGTTTGTGGGTAGTTTGATGGGGATTCAAGGGAGAGATAGGATTATCGTTATAACTCCGCCCTGGTTTGCCACTGATGGCTTTTCTTGGCATGCCACCCTCGCTTATGGCTGCAAGTTGAACGATCCATTAAAGATCCACTTGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGTTTTAGTGATAGCATGATACAAGTTAAGTTGCGAACTAAGCAATTCACTGAACCAGACTTGTTCAGAACTATGATTGGTGGAGGTAAGCTACCGGCTGAGACAACCCTCATTTGTTCTCGAGGTGCGGACAGTGCATTGGAGTTCCTGTCCACCTGCAAATTGGCAAACTTAACAGTGAAGGCAGAGCCGGGTTGTTGCTTGCTTCATAGAAGTGGAAGGCTCACAATAGATGGGTGTGTGCTTCAGTGCGAGGCGAATCCCCTAGACTTCCTTTCAGTCCCCATTGTCAGAGGTGACAAGGCGGTTTCAACTAGTGGAGGCCTGACATTGCAGCGAGTCCGAGTCATTTATGCTCGGACGTCGACTCATTTTCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

386

Amino Acids

43.18

Weight (kDa)

6.54

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
AarI CACCTGC 1 cut(s) 938
AatII GACGTC 1 cut(s) 1139
Acc36I ACCTGC 1 cut(s) 938
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 15, 76
AccI GTMKAC 1 cut(s) 1139
AciI CCGC 6 cut(s) 440, 644, 760, 770, 902, 1079
AclWI GGATC 3 cut(s) 451, 704, 715
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 1004
AcyI GRCGYC 2 cut(s) 737, 1136
AfaI GTAC 4 cut(s) 50, 78, 467, 489
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 614, 706, 1086
AhdI GACNNNNNGTC 1 cut(s) 241
AhlI ACTAGT 2 cut(s) 490, 1088
AjnI CCWGG 2 cut(s) 647, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 5 cut(s) 62, 91, 223, 485, 865
AluI AGCT 5 cut(s) 62, 91, 223, 485, 865
Alw26I GTCTC 4 cut(s) 350, 469, 748, 869
AlwI GGATC 3 cut(s) 451, 704, 715
Ama87I CYCGRG 1 cut(s) 894
AoxI GGCC 1 cut(s) 1096
ApeKI GCWGC 3 cut(s) 696, 766, 1108
ApoI RAATTY 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 552
AsuC2I CCSGG 1 cut(s) 966
AsuHPI GGTGA 3 cut(s) 156, 280, 1082
AvaI CYCGRG 1 cut(s) 894
AvaII GGWCC 1 cut(s) 552
BanI GGYRCC 2 cut(s) 15, 76
BbsI GAAGAC 2 cut(s) 62, 732
BbvI GCAGC 3 cut(s) 683, 753, 1120
BccI CCATC 3 cut(s) 598, 656, 1001
BceAI ACGGC 1 cut(s) 246
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 2 cut(s) 649, 734
BcnI CCSGG 1 cut(s) 966
BcoDI GTCTC 4 cut(s) 350, 469, 748, 869
BcuI ACTAGT 2 cut(s) 490, 1088
BfaI CTAG 3 cut(s) 491, 1040, 1089
BfuAI ACCTGC 1 cut(s) 938
BglII AGATCT 1 cut(s) 399
BisI GCNGC 5 cut(s) 441, 697, 767, 770, 1109
BlsI GCNGC 5 cut(s) 442, 698, 768, 771, 1110
Bme1390I CCNGG 3 cut(s) 649, 734, 966
Bme18I GGWCC 1 cut(s) 552
BmeRI GACNNNNNGTC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 894
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 3 cut(s) 17, 78, 537
BmrFI CCNGG 3 cut(s) 649, 734, 966
BmsI GCATC 2 cut(s) 248, 384
BpiI GAAGAC 2 cut(s) 62, 732
BpuEI CTTGAG 1 cut(s) 748
BpuMI CCSGG 1 cut(s) 966
BsaAI YACGTR 1 cut(s) 121
BsaHI GRCGYC 2 cut(s) 737, 1136
BsaJI CCNNGG 2 cut(s) 286, 647
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 1103
BseBI CCWGG 2 cut(s) 649, 734
BseDI CCNNGG 2 cut(s) 286, 647
BseGI GGATG 2 cut(s) 156, 478
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 1103
BseMII CTCAG 1 cut(s) 864
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 395, 398
BseXI GCAGC 3 cut(s) 683, 753, 1120
BseYI CCCAGC 1 cut(s) 745
BshFI GGCC 1 cut(s) 1098
BshNI GGYRCC 2 cut(s) 15, 76
BsiHKCI CYCGRG 1 cut(s) 894
BsiSI CCGG 2 cut(s) 869, 965
BslFI GGGAC 2 cut(s) 305, 1040
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 4 cut(s) 350, 469, 748, 869
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 305, 1040
BsnI GGCC 1 cut(s) 1098
BsoBI CYCGRG 1 cut(s) 894
Bsp143I GATC 5 cut(s) 142, 399, 456, 709, 720
BspACI CCGC 6 cut(s) 440, 644, 760, 770, 902, 1079
BspANI GGCC 1 cut(s) 1098
BspCNI CTCAG 1 cut(s) 865
BspLI GGNNCC 3 cut(s) 17, 78, 537
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 3 cut(s) 451, 704, 715
BspT107I GGYRCC 2 cut(s) 15, 76
BsrDI GCAATG 1 cut(s) 1103
BsrFI RCCGGY 1 cut(s) 868
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 286, 647
BssMI GATC 5 cut(s) 142, 399, 456, 709, 720
BssNI GRCGYC 2 cut(s) 737, 1136
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 2 cut(s) 649, 734
Bst4CI ACNGT 3 cut(s) 321, 908, 952
BstACI GRCGYC 2 cut(s) 737, 1136
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 424, 678, 977
BstDEI CTNAG 3 cut(s) 180, 813, 873
BstF5I GGATG 2 cut(s) 156, 478
BstKTI GATC 5 cut(s) 145, 402, 459, 712, 723
BstMAI GTCTC 4 cut(s) 350, 469, 748, 869
BstMBI GATC 5 cut(s) 142, 399, 456, 709, 720
BstMWI GCNNNNNNNGC 5 cut(s) 97, 686, 766, 814, 908
BstNI CCWGG 2 cut(s) 649, 734
BstNSI RCATGY 2 cut(s) 373, 680
BstSCI CCNGG 3 cut(s) 647, 732, 964
BstV1I GCAGC 3 cut(s) 683, 753, 1120
BstV2I GAAGAC 2 cut(s) 62, 732
BstX2I RGATCY 3 cut(s) 399, 456, 720
BstYI RGATCY 3 cut(s) 399, 456, 720
BsuRI GGCC 1 cut(s) 1098
BtsCI GGATG 2 cut(s) 156, 478
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 6 cut(s) 521, 657, 822, 913, 957, 1028
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 3 cut(s) 424, 678, 977
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 1 cut(s) 552
CseI GACGC 1 cut(s) 726
Csp6I GTAC 4 cut(s) 49, 77, 466, 488
CviAII CATG 9 cut(s) 140, 198, 275, 370, 461, 515, 565, 677, 790
CviQI GTAC 4 cut(s) 49, 77, 466, 488
DdeI CTNAG 3 cut(s) 180, 813, 873
DpnI GATC 5 cut(s) 144, 401, 458, 711, 722
DpnII GATC 5 cut(s) 142, 399, 456, 709, 720
DriI GACNNNNNGTC 1 cut(s) 241
Eam1105I GACNNNNNGTC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 1098
Eco47I GGWCC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 1004
Eco88I CYCGRG 1 cut(s) 894
EcoRII CCWGG 2 cut(s) 647, 732
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 9 cut(s) 143, 201, 278, 373, 464, 518, 568, 680, 793
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 2 cut(s) 305, 1040
FatI CATG 9 cut(s) 139, 197, 274, 369, 460, 514, 564, 676, 789
FauNDI CATATG 1 cut(s) 300
FblI GTMKAC 1 cut(s) 1139
Fnu4HI GCNGC 5 cut(s) 441, 697, 767, 770, 1109
FokI GGATG 2 cut(s) 163, 465
Fsp4HI GCNGC 5 cut(s) 441, 697, 767, 770, 1109
FspBI CTAG 3 cut(s) 491, 1040, 1089
GluI GCNGC 5 cut(s) 441, 697, 767, 770, 1109
GsaI CCCAGC 1 cut(s) 749
HaeIII GGCC 1 cut(s) 1098
HapII CCGG 2 cut(s) 869, 965
HgaI GACGC 1 cut(s) 726
Hin1I GRCGYC 2 cut(s) 737, 1136
Hin1II CATG 9 cut(s) 143, 201, 278, 373, 464, 518, 568, 680, 793
HincII GTYRAC 1 cut(s) 1140
HindII GTYRAC 1 cut(s) 1140
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 8 cut(s) 203, 236, 293, 610, 1033, 1113, 1119, 1141
HpaII CCGG 2 cut(s) 869, 965
HphI GGTGA 3 cut(s) 156, 280, 1082
Hpy166II GTNNAC 2 cut(s) 927, 1140
Hpy188I TCNGA 6 cut(s) 208, 454, 842, 1067, 1118, 1134
Hpy188III TCNNGA 1 cut(s) 894
Hpy8I GTNNAC 2 cut(s) 927, 1140
Hpy99I CGWCG 1 cut(s) 1141
HpyAV CCTTC 2 cut(s) 949, 987
HpyCH4III ACNGT 3 cut(s) 321, 908, 952
HpyCH4IV ACGT 2 cut(s) 120, 1136
HpyCH4V TGCA 7 cut(s) 100, 175, 375, 699, 911, 933, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 686, 766, 814, 908
HpyF3I CTNAG 3 cut(s) 180, 813, 873
HpySE526I ACGT 2 cut(s) 120, 1136
Hsp92I GRCGYC 2 cut(s) 737, 1136
Hsp92II CATG 9 cut(s) 143, 201, 278, 373, 464, 518, 568, 680, 793
KpnI GGTACC 1 cut(s) 80
Kzo9I GATC 5 cut(s) 142, 399, 456, 709, 720
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 3 cut(s) 683, 753, 1120
LweI GCATC 2 cut(s) 248, 384
MaeI CTAG 3 cut(s) 491, 1040, 1089
MaeII ACGT 2 cut(s) 120, 1136
MaeIII GTNAC 2 cut(s) 333, 1070
MalI GATC 5 cut(s) 144, 401, 458, 711, 722
MboI GATC 5 cut(s) 142, 399, 456, 709, 720
MboII GAAGA 2 cut(s) 62, 732
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 3 cut(s) 399, 456, 720
MluCI AATT 5 cut(s) 168, 209, 279, 818, 935
MlyI GAGTC 5 cut(s) 230, 287, 1122, 1128, 1135
MseI TTAA 4 cut(s) 350, 716, 801, 947
MslI CAYNNNNRTG 1 cut(s) 987
MspA1I CMGCKG 2 cut(s) 485, 760
MspI CCGG 2 cut(s) 869, 965
MspR9I CCNGG 3 cut(s) 649, 734, 966
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 2 cut(s) 649, 734
MwoI GCNNNNNNNGC 5 cut(s) 97, 686, 766, 814, 908
NciI CCSGG 1 cut(s) 966
NdeI CATATG 1 cut(s) 300
NdeII GATC 5 cut(s) 142, 399, 456, 709, 720
NlaIII CATG 9 cut(s) 143, 201, 278, 373, 464, 518, 568, 680, 793
NlaIV GGNNCC 3 cut(s) 17, 78, 537
NmuCI GTSAC 1 cut(s) 1070
NspI RCATGY 2 cut(s) 373, 680
PaeI GCATGC 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 894
PaqCI CACCTGC 1 cut(s) 938
PceI AGGCCT 1 cut(s) 1098
PfeI GAWTC 3 cut(s) 203, 610, 1033
PkrI GCNGC 5 cut(s) 442, 698, 768, 771, 1110
PleI GAGTC 5 cut(s) 230, 287, 1121, 1127, 1135
PpsI GAGTC 5 cut(s) 230, 287, 1121, 1127, 1135
Ppu21I YACGTR 1 cut(s) 121
PsiI TTATAA 1 cut(s) 638
Psp6I CCWGG 2 cut(s) 647, 732
PspFI CCCAGC 1 cut(s) 745
PspGI CCWGG 2 cut(s) 647, 732
PspN4I GGNNCC 3 cut(s) 17, 78, 537
PspPI GGNCC 1 cut(s) 552
PsuI RGATCY 3 cut(s) 399, 456, 720
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 50, 78, 467, 489
RsaNI GTAC 4 cut(s) 49, 77, 466, 488
RseI CAYNNNNRTG 1 cut(s) 987
SalI GTCGAC 1 cut(s) 1138
SaqAI TTAA 4 cut(s) 350, 716, 801, 947
SatI GCNGC 5 cut(s) 441, 697, 767, 770, 1109
Sau3AI GATC 5 cut(s) 142, 399, 456, 709, 720
Sau96I GGNCC 1 cut(s) 552
SchI GAGTC 5 cut(s) 230, 287, 1122, 1128, 1135
ScrFI CCNGG 3 cut(s) 649, 734, 966
SfaNI GCATC 2 cut(s) 248, 384
Sfr274I CTCGAG 1 cut(s) 894
SinI GGWCC 1 cut(s) 552
SlaI CTCGAG 1 cut(s) 894
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 2 cut(s) 727, 894
SmoI CTYRAG 2 cut(s) 727, 894
SpeI ACTAGT 2 cut(s) 490, 1088
SphI GCATGC 1 cut(s) 680
Sse9I AATT 5 cut(s) 168, 209, 279, 818, 935
SseBI AGGCCT 1 cut(s) 1098
SsiI CCGC 6 cut(s) 440, 644, 760, 770, 902, 1079
SspMI CTAG 3 cut(s) 491, 1040, 1089
StuI AGGCCT 1 cut(s) 1098
StyD4I CCNGG 3 cut(s) 647, 732, 964
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 3 cut(s) 321, 908, 952
TaiI ACGT 2 cut(s) 123, 1139
TaqI TCGA 3 cut(s) 378, 895, 1139
TasI AATT 5 cut(s) 168, 209, 279, 818, 935
TatI WGTACW 2 cut(s) 48, 487
TauI GCSGC 2 cut(s) 443, 772
TfiI GAWTC 3 cut(s) 203, 610, 1033
Tru1I TTAA 4 cut(s) 350, 716, 801, 947
Tru9I TTAA 4 cut(s) 350, 716, 801, 947
TscAI CASTG 6 cut(s) 528, 664, 829, 913, 957, 1028
TseFI GTSAC 1 cut(s) 1070
TseI GCWGC 3 cut(s) 696, 766, 1108
Tsp45I GTSAC 1 cut(s) 1070
TspDTI ATGAA 5 cut(s) 291, 329, 531, 573, 971
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 6 cut(s) 528, 664, 829, 913, 957, 1028
VpaK11BI GGWCC 1 cut(s) 552
XapI RAATTY 1 cut(s) 209
XceI RCATGY 2 cut(s) 373, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XhoI CTCGAG 1 cut(s) 894
XmiI GTMKAC 1 cut(s) 1139
XspI CTAG 3 cut(s) 491, 1040, 1089
ZraI GACGTC 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.