Rh1CG052400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007291
Physical Location & Seq
Forward (+)
9675112 .. 9678644
3533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG052400.1

Sequence Viewer

Length: 684 bp
ATGTATGACAAAGTTGTTCTATTTCTGTCTCATATTTCTATTGAGTGTGCAGATCGCTATAACACCGCCCTGGTTTGCCACAGATGGCTTTTCTTGGCATGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCAATTAAAGATCCATTGGAGCCTGGCATCTTCCCCAGTATTGAGACAGCGGTTGCTGCCGCAAGGCCTGGCGACACCATTCTAATTTCAGCAGGGGGAAGGCATCTTGCTTCTGATATTCAAATAAAAAAGCCGCTTTGCCTGATTGGTGGAGGTGAGCTACCGGATGAGACAACCCTCATTTGTTCTCGCGGTGCAGACAGTGCATTGGAGTTCCTGTCCACCTGCAAATTGGCAAACTTAACTGTGAAGGCAGAGCTGGGTTCTTGCTTGCTTCATAGAAGTGGAAGGCTCACAATAGATGGGTGCGTGCTTCAGTGCGAGACGAATCCCCTAGACTTCCTTTCGGTCCCCATTGTGAGTACAGCAAGTGCGCAAACTGTGTTGTCTTCTTCGGTGAAGTGTTATAAGGATGGTGTTTCTGTTTCTCGGACTCGAATTGAAGGAGGTGCCAAGGCTGTTTCAACTAGTGGATACCTGACATTGCAGCGAGTACGAGTCATATATGCTCGGACGTCTCTCGTTTTCTGGTTTGATATGGAGCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

227

Amino Acids

24.8

Weight (kDa)

8.04

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AarI CACCTGC 1 cut(s) 365
AatII GACGTC 1 cut(s) 650
Acc16I TGCGCA 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 581
AccII CGCG 1 cut(s) 324
AciI CCGC 5 cut(s) 66, 182, 192, 266, 324
AclWI GGATC 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 431
AcyI GRCGYC 1 cut(s) 647
AfaI GTAC 2 cut(s) 496, 627
AgsI TTSAA 4 cut(s) 128, 254, 575, 597
AhlI ACTAGT 1 cut(s) 599
AjnI CCWGG 3 cut(s) 69, 154, 199
AluBI AGCT 2 cut(s) 292, 391
AluI AGCT 2 cut(s) 292, 391
Alw26I GTCTC 5 cut(s) 33, 170, 296, 449, 654
AlwI GGATC 1 cut(s) 137
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 3 cut(s) 118, 188, 619
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 3 cut(s) 95, 299, 541
AvaII GGWCC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 105, 175, 631
BccI CCATC 3 cut(s) 78, 428, 539
BciT130I CCWGG 3 cut(s) 71, 156, 201
BciVI GTATCC 1 cut(s) 599
BcoDI GTCTC 5 cut(s) 33, 170, 296, 449, 654
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 2 cut(s) 467, 600
BfuAI ACCTGC 1 cut(s) 365
BfuI GTATCC 1 cut(s) 599
BisI GCNGC 5 cut(s) 119, 189, 192, 266, 620
BlsI GCNGC 5 cut(s) 120, 190, 193, 267, 621
Bme1390I CCNGG 3 cut(s) 71, 156, 201
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 3 cut(s) 153, 483, 583
BmrFI CCNGG 3 cut(s) 71, 156, 201
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 168, 244
BmuI ACTGGG 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 69, 585
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 614
BseBI CCWGG 3 cut(s) 71, 156, 201
BseDI CCNNGG 2 cut(s) 69, 585
BseGI GGATG 2 cut(s) 304, 550
BseMI GCAATG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 3 cut(s) 105, 175, 631
BseYI CCCAGC 1 cut(s) 391
BsgI GTGCAG 2 cut(s) 69, 348
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 581
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 5 cut(s) 33, 170, 296, 449, 654
BsmBI CGTCTC 2 cut(s) 449, 654
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 52, 131, 142
BspACI CCGC 5 cut(s) 66, 182, 192, 266, 324
BspANI GGCC 1 cut(s) 199
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 153, 483, 583
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 614
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 69, 585
BssMI GATC 3 cut(s) 52, 131, 142
BssNI GRCGYC 1 cut(s) 647
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 3 cut(s) 71, 156, 201
Bst4CI ACNGT 3 cut(s) 335, 379, 514
BstACI GRCGYC 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 404, 443
BstF5I GGATG 2 cut(s) 304, 550
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 3 cut(s) 55, 134, 145
BstMAI GTCTC 5 cut(s) 33, 170, 296, 449, 654
BstMBI GATC 3 cut(s) 52, 131, 142
BstMWI GCNNNNNNNGC 2 cut(s) 188, 335
BstNI CCWGG 3 cut(s) 71, 156, 201
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 69, 154, 199
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 105, 175, 631
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 304, 550
BtsIMutI CAGTG 2 cut(s) 340, 455
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 2 cut(s) 404, 443
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 495, 626
CviAII CATG 1 cut(s) 99
CviJI RGCY 9 cut(s) 88, 118, 154, 199, 265, 292, 391, 424, 590
CviKI_1 RGCY 9 cut(s) 88, 118, 154, 199, 265, 292, 391, 424, 590
CviQI GTAC 2 cut(s) 495, 626
DpnI GATC 3 cut(s) 54, 133, 144
DpnII GATC 3 cut(s) 52, 131, 142
Eco130I CCWWGG 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 69, 154, 199
EcoT14I CCWWGG 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 585
Esp3I CGTCTC 2 cut(s) 449, 654
FaeI CATG 1 cut(s) 102
FaqI GGGAC 1 cut(s) 467
FatI CATG 1 cut(s) 98
Fnu4HI GCNGC 5 cut(s) 119, 189, 192, 266, 620
FokI GGATG 2 cut(s) 311, 557
Fsp4HI GCNGC 5 cut(s) 119, 189, 192, 266, 620
FspBI CTAG 2 cut(s) 467, 600
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 1 cut(s) 507
GluI GCNGC 5 cut(s) 119, 189, 192, 266, 620
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 296
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 1 cut(s) 102
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HinfI GANTC 3 cut(s) 460, 565, 630
HpaII CCGG 1 cut(s) 296
HphI GGTGA 3 cut(s) 95, 299, 541
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 3 cut(s) 247, 564, 645
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 4 cut(s) 225, 376, 414, 569
HpyCH4III ACNGT 3 cut(s) 335, 379, 514
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 5 cut(s) 50, 329, 338, 360, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 335
HpySE526I ACGT 1 cut(s) 647
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 1 cut(s) 102
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 3 cut(s) 52, 131, 142
LmnI GCTCC 2 cut(s) 151, 673
Lsp1109I GCAGC 3 cut(s) 105, 175, 631
LweI GCATC 2 cut(s) 168, 244
MaeI CTAG 2 cut(s) 467, 600
MaeII ACGT 1 cut(s) 647
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 54, 133, 144
MboI GATC 3 cut(s) 52, 131, 142
MboII GAAGA 3 cut(s) 154, 513, 516
MflI RGATCY 1 cut(s) 142
MluCI AATT 4 cut(s) 135, 216, 362, 570
MlyI GAGTC 2 cut(s) 559, 639
MnlI CCTC 4 cut(s) 117, 278, 320, 572
MseI TTAA 2 cut(s) 138, 374
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 3 cut(s) 71, 156, 201
MvaI CCWGG 3 cut(s) 71, 156, 201
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 188, 335
NdeII GATC 3 cut(s) 52, 131, 142
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 3 cut(s) 153, 483, 583
NmuCI GTSAC 1 cut(s) 101
NsbI TGCGCA 1 cut(s) 507
NspI RCATGY 1 cut(s) 102
PaqCI CACCTGC 1 cut(s) 365
PceI AGGCCT 1 cut(s) 199
PfeI GAWTC 1 cut(s) 460
PkrI GCNGC 5 cut(s) 120, 190, 193, 267, 621
PleI GAGTC 2 cut(s) 559, 638
PpsI GAGTC 2 cut(s) 559, 638
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 3 cut(s) 69, 154, 199
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 3 cut(s) 69, 154, 199
PspN4I GGNNCC 3 cut(s) 153, 483, 583
PspPI GGNCC 1 cut(s) 481
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 496, 627
RsaNI GTAC 2 cut(s) 495, 626
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 2 cut(s) 138, 374
SatI GCNGC 5 cut(s) 119, 189, 192, 266, 620
Sau3AI GATC 3 cut(s) 52, 131, 142
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 2 cut(s) 559, 639
ScrFI CCNGG 3 cut(s) 71, 156, 201
SetI ASST 7 cut(s) 289, 294, 359, 393, 583, 612, 650
SfaNI GCATC 2 cut(s) 168, 244
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 414
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 4 cut(s) 135, 216, 362, 570
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 5 cut(s) 66, 182, 192, 266, 324
SspMI CTAG 2 cut(s) 467, 600
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 69, 154, 199
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 3 cut(s) 335, 379, 514
TaiI ACGT 1 cut(s) 650
TaqI TCGA 1 cut(s) 568
TaqII GACCGA 1 cut(s) 469
TasI AATT 4 cut(s) 135, 216, 362, 570
TatI WGTACW 1 cut(s) 494
TauI GCSGC 2 cut(s) 194, 268
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 2 cut(s) 138, 374
Tru9I TTAA 2 cut(s) 138, 374
TscAI CASTG 2 cut(s) 340, 455
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 3 cut(s) 118, 188, 619
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 2 cut(s) 340, 455
VpaK11BI GGWCC 1 cut(s) 481
XceI RCATGY 1 cut(s) 102
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XspI CTAG 2 cut(s) 467, 600
ZraI GACGTC 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.