Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007291

Physical Location & Seq

Genomic Coordinates Reverse (-)

64616623 .. 64622143

Gene Structure 5521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAACTGTGCTTGGAGTTGTTACCAGTGGGGCTTTTAAGGGAGACGGAGAAAGGCATGTGCATCGAGGAGGAGATAAGGTTGGAGATAAAGGTTGAGATCTATGAGGATAACGATAATGCGAGCAAGGACGAGTTTGCGGCTCTGCTCTCGGAGATCCATGAGTACCATAGGAGACATCCAGCTGCACTAGTTGTTGTTGCCAATGAGGAACATGAAGCACTGCTCAAACAGGAGCCTCAAGTGGAGAGATGGCTTTTCTTGGCATGCCACCCTCGCTTATGGCTGCAAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGTGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCCTGGCGACACCATTCTAATTTCAGCAGGGGAAAAGCATCTTTTCCTGTCCAGCTGCAAATTGGCAAACTCAACAGTGAAGGCAGAGCCGGGTTGTTGCTTGCTTCATGGAAGTGGAAGGCTCACAATAGATGGGTGTGTGCTTCAGTGCGAGGCGAATCCCCTAGACTTCCTTTCAGTCCCCATTTGTTATGAGGATGGTGCTTTTGTTTCTTGGACTCGAATTCAAGGAGGTGACAAGGCTGTTTCAACTAGTGGAGGCCTGACATTGCAGGGAGTCCGAGTCATTTATGTTCGGACGTCGACTCTCATTTTCTGGTTTGATATGGAGCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

235

Amino Acids

26.1

Weight (kDa)

4.99

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54480 AT3G54480 AT3G54480 AT3G54480 AT3G54480 AT3G54480 AT3G54480
fragaria_vesca	FvH4_7g02750 FvH4_7g02750 FvH4_7g02750
malus_domestica	MD02G1290300.v1.1
prunus_persica	Prupe.2G032200_v2.0.a1
pyrus_communis	pycom02g24570
rosa_chinensis	RchiOBHm_Chr1g0322011
rosa_laevigata	RLG00000014709 RLG00000020397 RLG00000030394
rosa_multiflora	Rmu_sc0001168.1_g000007
rosa_roxburghii	Rroxscaffold_4G00327350
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1AG048300 Rh1BG046100 Rh1CG052400 Rh1DG056600
rosa_wichuraiana	Rw1G004370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	668
AciI	CCGC	3 cut(s)	140, 350, 360
AclWI	GGATC	3 cut(s)	151, 294, 305
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	665
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	296, 593, 615
AhlI	ACTAGT	2 cut(s)	190, 617
AjnI	CCWGG	2 cut(s)	322, 367
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	185, 420
AluI	AGCT	2 cut(s)	185, 420
Alw26I	GTCTC	3 cut(s)	38, 169, 338
AlwI	GGATC	3 cut(s)	151, 294, 305
AoxI	GGCC	2 cut(s)	365, 625
ApeKI	GCWGC	4 cut(s)	185, 286, 356, 420
ApoI	RAATTY	1 cut(s)	588
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	172, 273, 343, 407
BccI	CCATC	3 cut(s)	246, 491, 557
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	324, 369
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	3 cut(s)	38, 169, 338
BcuI	ACTAGT	2 cut(s)	190, 617
BfaI	CTAG	3 cut(s)	191, 530, 618
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	6 cut(s)	141, 186, 287, 357, 360, 421
BlsI	GCNGC	6 cut(s)	142, 187, 288, 358, 361, 422
Bme1390I	CCNGG	3 cut(s)	324, 369, 456
BmiI	GGNNCC	2 cut(s)	237, 321
BmrFI	CCNGG	3 cut(s)	324, 369, 456
BmsI	GCATC	2 cut(s)	72, 412
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	665
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 633, 663
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	324, 369
BseGI	GGATG	2 cut(s)	178, 568
BseMI	GCAATG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	83, 86
BseXI	GCAGC	4 cut(s)	172, 273, 343, 407
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	367, 627
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	530
BsmAI	GTCTC	3 cut(s)	38, 169, 338
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	367, 627
Bsp143I	GATC	4 cut(s)	99, 156, 299, 310
BspACI	CCGC	3 cut(s)	140, 350, 360
BspANI	GGCC	2 cut(s)	367, 627
BspLI	GGNNCC	2 cut(s)	237, 321
BspPI	GGATC	3 cut(s)	151, 294, 305
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	26
BssMI	GATC	4 cut(s)	99, 156, 299, 310
BssNI	GRCGYC	1 cut(s)	665
Bst2UI	CCWGG	2 cut(s)	324, 369
Bst4CI	ACNGT	2 cut(s)	9, 442
BstACI	GRCGYC	1 cut(s)	665
BstC8I	GCNNGC	3 cut(s)	124, 268, 467
BstF5I	GGATG	2 cut(s)	178, 568
BstKTI	GATC	4 cut(s)	102, 159, 302, 313
BstMAI	GTCTC	3 cut(s)	38, 169, 338
BstMBI	GATC	4 cut(s)	99, 156, 299, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 356
BstNI	CCWGG	2 cut(s)	324, 369
BstNSI	RCATGY	2 cut(s)	61, 270
BstSCI	CCNGG	3 cut(s)	322, 367, 454
BstV1I	GCAGC	4 cut(s)	172, 273, 343, 407
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	3 cut(s)	99, 156, 310
BstYI	RGATCY	3 cut(s)	99, 156, 310
BsuRI	GGCC	2 cut(s)	367, 627
BtsCI	GGATG	2 cut(s)	178, 568
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	4 cut(s)	33, 221, 447, 518
Cac8I	GCNNGC	3 cut(s)	124, 268, 467
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	5 cut(s)	58, 161, 215, 267, 473
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	4 cut(s)	101, 158, 301, 312
DpnII	GATC	4 cut(s)	99, 156, 299, 310
Eco147I	AGGCCT	2 cut(s)	367, 627
Eco57I	CTGAAG	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	322, 367
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	5 cut(s)	61, 164, 218, 270, 476
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	5 cut(s)	57, 160, 214, 266, 472
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	6 cut(s)	141, 186, 287, 357, 360, 421
FokI	GGATG	2 cut(s)	165, 575
Fsp4HI	GCNGC	6 cut(s)	141, 186, 287, 357, 360, 421
FspBI	CTAG	3 cut(s)	191, 530, 618
GluI	GCNGC	6 cut(s)	141, 186, 287, 357, 360, 421
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	367, 627
HapII	CCGG	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	61, 164, 218, 270, 476
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HinfI	GANTC	5 cut(s)	523, 583, 642, 648, 670
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	3 cut(s)	154, 647, 663
Hpy8I	GTNNAC	1 cut(s)	669
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	2 cut(s)	439, 477
HpyCH4III	ACNGT	2 cut(s)	9, 442
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	5 cut(s)	63, 188, 289, 423, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 356
HpySE526I	ACGT	1 cut(s)	665
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	5 cut(s)	61, 164, 218, 270, 476
Kzo9I	GATC	4 cut(s)	99, 156, 299, 310
LmnI	GCTCC	3 cut(s)	235, 319, 694
Lsp1109I	GCAGC	4 cut(s)	172, 273, 343, 407
LweI	GCATC	2 cut(s)	72, 412
MaeI	CTAG	3 cut(s)	191, 530, 618
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	21, 599
MalI	GATC	4 cut(s)	101, 158, 301, 312
MboI	GATC	4 cut(s)	99, 156, 299, 310
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	3 cut(s)	99, 156, 310
MluCI	AATT	3 cut(s)	384, 425, 588
MlyI	GAGTC	4 cut(s)	577, 651, 657, 664
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	2 cut(s)	38, 306
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	3 cut(s)	185, 350, 420
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	3 cut(s)	324, 369, 456
MvaI	CCWGG	2 cut(s)	324, 369
MwoI	GCNNNNNNNGC	2 cut(s)	276, 356
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	4 cut(s)	99, 156, 299, 310
NlaIII	CATG	5 cut(s)	61, 164, 218, 270, 476
NlaIV	GGNNCC	2 cut(s)	237, 321
NmuCI	GTSAC	1 cut(s)	599
NspI	RCATGY	2 cut(s)	61, 270
PaeI	GCATGC	1 cut(s)	270
PceI	AGGCCT	2 cut(s)	367, 627
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	6 cut(s)	142, 187, 288, 358, 361, 422
PleI	GAGTC	4 cut(s)	577, 650, 656, 664
PpsI	GAGTC	4 cut(s)	577, 650, 656, 664
Psp6I	CCWGG	2 cut(s)	322, 367
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	322, 367
PspN4I	GGNNCC	2 cut(s)	237, 321
PsuI	RGATCY	3 cut(s)	99, 156, 310
PvuII	CAGCTG	2 cut(s)	185, 420
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	477
SalI	GTCGAC	1 cut(s)	667
SaqAI	TTAA	2 cut(s)	38, 306
SatI	GCNGC	6 cut(s)	141, 186, 287, 357, 360, 421
Sau3AI	GATC	4 cut(s)	99, 156, 299, 310
SchI	GAGTC	4 cut(s)	577, 651, 657, 664
ScrFI	CCNGG	3 cut(s)	324, 369, 456
SetI	ASST	6 cut(s)	83, 96, 187, 422, 601, 668
SfaNI	GCATC	2 cut(s)	72, 412
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SpeI	ACTAGT	2 cut(s)	190, 617
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	3 cut(s)	384, 425, 588
SseBI	AGGCCT	2 cut(s)	367, 627
SsiI	CCGC	3 cut(s)	140, 350, 360
SspMI	CTAG	3 cut(s)	191, 530, 618
StuI	AGGCCT	2 cut(s)	367, 627
StyD4I	CCNGG	3 cut(s)	322, 367, 454
TaaI	ACNGT	2 cut(s)	9, 442
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	3 cut(s)	66, 586, 668
TasI	AATT	3 cut(s)	384, 425, 588
TauI	GCSGC	2 cut(s)	143, 362
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	38, 306
Tru9I	TTAA	2 cut(s)	38, 306
TscAI	CASTG	4 cut(s)	33, 228, 447, 518
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	4 cut(s)	185, 286, 356, 420
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	3 cut(s)	17, 231, 461
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	4 cut(s)	33, 228, 447, 518
XapI	RAATTY	1 cut(s)	588
XceI	RCATGY	2 cut(s)	61, 270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	3 cut(s)	191, 530, 618
ZraI	GACGTC	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.