Rh1DG056600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007291
Physical Location & Seq
Forward (+)
9133345 .. 9137097
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG056600.1

Sequence Viewer

Length: 540 bp
ATGTTCCAAACAGATCTAATTTGCACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTATGGAGGTGGGAGAAGAGCTGAAGCAACCAAAGTGGAAGAGAAGTGTTCCAAAGAGATTCAGCTCACCAAAGTCATCTTCTTCTTTGTCTTGTCTTATAAACAATCTTGATGATGGCTGCCTCATGCACATCTTTAGCTTCCTCTCTCCTATCCCAGATCGCTATAACACCGCCCTGGTTTGCCACAGATGGCTTTTCTTGGCATGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCAATTAAAGATCCATTGGAGCCTGGCATCTTCCCCAGTATTGAGACAGCGGTTGCTGCCGCAAGGCCTGGCGACACCATTCTAATTTCAGCAGGGGGAAGGCATCTTGCTTCTGATATTCAAATAAAAAAGCCGCTTTGCCTGGTATGTCTCAAAGTAATTAAGACAGTTTTTGCTTGCATGTATACACCTCTAAATATGGGAGATTACCTTGGTATGCTAAAGAATGAGCAAACAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

179

Amino Acids

20.41

Weight (kDa)

8.81

Isoelectric Point (pI)

67.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 61 - 97 4.2e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AccI GTMKAC 1 cut(s) 482
AciI CCGC 4 cut(s) 231, 347, 357, 431
AclWI GGATC 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 293, 419
AjnI CCWGG 4 cut(s) 234, 319, 364, 438
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 3 cut(s) 79, 123, 198
AluI AGCT 3 cut(s) 79, 123, 198
Alw26I GTCTC 2 cut(s) 335, 452
AlwI GGATC 1 cut(s) 302
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 3 cut(s) 177, 283, 353
AsuHPI GGTGA 2 cut(s) 117, 260
BbvI GCAGC 3 cut(s) 164, 270, 340
BccI CCATC 2 cut(s) 167, 243
BciT130I CCWGG 4 cut(s) 236, 321, 366, 440
BcoDI GTCTC 2 cut(s) 335, 452
BglII AGATCT 1 cut(s) 13
BisI GCNGC 5 cut(s) 178, 284, 354, 357, 431
BlsI GCNGC 5 cut(s) 179, 285, 355, 358, 432
Bme1390I CCNGG 4 cut(s) 236, 321, 366, 440
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 4 cut(s) 236, 321, 366, 440
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 333, 409
BmuI ACTGGG 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 234, 508
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 4 cut(s) 236, 321, 366, 440
BseDI CCNNGG 2 cut(s) 234, 508
BseNI ACTGG 1 cut(s) 333
BseXI GCAGC 3 cut(s) 164, 270, 340
BshFI GGCC 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 335, 452
BsnI GGCC 1 cut(s) 364
Bsp143I GATC 4 cut(s) 13, 217, 296, 307
BspACI CCGC 4 cut(s) 231, 347, 357, 431
BspANI GGCC 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 234, 508
BssMI GATC 4 cut(s) 13, 217, 296, 307
BssNAI GTATAC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 483
Bst2UI CCWGG 4 cut(s) 236, 321, 366, 440
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 69, 92
BstC8I GCNNGC 1 cut(s) 475
BstKTI GATC 4 cut(s) 16, 220, 299, 310
BstMAI GTCTC 2 cut(s) 335, 452
BstMBI GATC 4 cut(s) 13, 217, 296, 307
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 4 cut(s) 236, 321, 366, 440
BstNSI RCATGY 2 cut(s) 267, 481
BstSCI CCNGG 4 cut(s) 234, 319, 364, 438
BstV1I GCAGC 3 cut(s) 164, 270, 340
BstX2I RGATCY 2 cut(s) 13, 307
BstYI RGATCY 2 cut(s) 13, 307
BstZ17I GTATAC 1 cut(s) 483
BsuRI GGCC 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 475
CspCI CAANNNNNGTGG 2 cut(s) 74, 109
CviAII CATG 3 cut(s) 184, 264, 478
DpnI GATC 4 cut(s) 15, 219, 298, 309
DpnII GATC 4 cut(s) 13, 217, 296, 307
Eam1104I CTCTTC 2 cut(s) 69, 92
EarI CTCTTC 2 cut(s) 69, 92
Eco130I CCWWGG 1 cut(s) 508
Eco147I AGGCCT 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 4 cut(s) 234, 319, 364, 438
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 3 cut(s) 187, 267, 481
FatI CATG 3 cut(s) 183, 263, 477
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 5 cut(s) 178, 284, 354, 357, 431
Fsp4HI GCNGC 5 cut(s) 178, 284, 354, 357, 431
GluI GCNGC 5 cut(s) 178, 284, 354, 357, 431
HaeIII GGCC 1 cut(s) 364
Hin1II CATG 3 cut(s) 187, 267, 481
HinfI GANTC 1 cut(s) 117
HphI GGTGA 2 cut(s) 117, 260
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 483
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 24, 187, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
Hsp92II CATG 3 cut(s) 187, 267, 481
Kzo9I GATC 4 cut(s) 13, 217, 296, 307
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 3 cut(s) 164, 270, 340
LweI GCATC 2 cut(s) 333, 409
MaeIII GTNAC 1 cut(s) 266
MalI GATC 4 cut(s) 15, 219, 298, 309
MboI GATC 4 cut(s) 13, 217, 296, 307
MboII GAAGA 5 cut(s) 86, 109, 129, 132, 319
MflI RGATCY 2 cut(s) 13, 307
MluCI AATT 5 cut(s) 18, 300, 381, 456, 534
MnlI CCTC 6 cut(s) 49, 58, 191, 212, 282, 498
MseI TTAA 3 cut(s) 303, 459, 538
MspA1I CMGCKG 1 cut(s) 347
MspR9I CCNGG 4 cut(s) 236, 321, 366, 440
MvaI CCWGG 4 cut(s) 236, 321, 366, 440
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 4 cut(s) 13, 217, 296, 307
NlaIII CATG 3 cut(s) 187, 267, 481
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 2 cut(s) 267, 481
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 5 cut(s) 179, 285, 355, 358, 432
PsiI TTATAA 1 cut(s) 158
Psp6I CCWGG 4 cut(s) 234, 319, 364, 438
PspGI CCWGG 4 cut(s) 234, 319, 364, 438
PspN4I GGNNCC 1 cut(s) 318
PsuI RGATCY 2 cut(s) 13, 307
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 303, 459, 538
SatI GCNGC 5 cut(s) 178, 284, 354, 357, 431
Sau3AI GATC 4 cut(s) 13, 217, 296, 307
ScrFI CCNGG 4 cut(s) 236, 321, 366, 440
SetI ASST 6 cut(s) 69, 81, 125, 200, 490, 510
SfaNI GCATC 2 cut(s) 333, 409
Sse9I AATT 5 cut(s) 18, 300, 381, 456, 534
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 4 cut(s) 231, 347, 357, 431
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 4 cut(s) 234, 319, 364, 438
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 466
TasI AATT 5 cut(s) 18, 300, 381, 456, 534
TauI GCSGC 2 cut(s) 359, 433
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 303, 459, 538
Tru9I TTAA 3 cut(s) 303, 459, 538
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 3 cut(s) 177, 283, 353
Tsp45I GTSAC 1 cut(s) 266
XceI RCATGY 2 cut(s) 267, 481
XmiI GTMKAC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.