FvH4_7g04210

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011860
Physical Location & Seq
Reverse (-)
4817663 .. 4822629
4967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04210.t1

Sequence Viewer

Length: 861 bp
ATGAGGAAGAAGCTCGATACTCGTTTCCCTGCTGCCCGGATTAAAAAAATTATGCAAGCTGATGAGGATGTTGGCAAGATAGCATTGGCAGTGCCCGTTTTAGTTTCTAAAGCATTAGAGTTATTTTTACAAGACCTTTGTGACCGTACATACGAAATAACTCTCCAAAGAGGAGCTAAAACCATGAATTCAGTGCATCTAAAACATTGTGTACAGAGCTATAATGTGTTTGATTTTCTAAGAGAAATTGTCAGTAGAGTGCCTGACTATGGTCATGGTCATTCTGATGCTGCTGCTAGTGCTGATGATCGAGCCATCACAAAGAGAAGAAAACCACCAGGTGATGAATGCATTGACAGTGACGAGGAGTTGAAGAGGAGCAAGATGCTTGAGGTAAGCCATGGAAGCAGCAGTGGCAGGGGAAGAGGACGGGGTCGAGGGCGAGGCCGTGGACGTGGTGCTCGAACAACTGAAAGAGAGCCTGTGCATCATGAGACTGAATCTGAACCCTGCACATCTCTTCAGCAGAGCAGCAAACTGAATGTAAACCCTGCCATGGTGGTGGATGATGTTTCCGAGTCAAAGGATTTATTGAAGGAAAATGTCGGTGTCCCTGATGAATCTGATCCGACAGTTCGAAATTTTGACTTGAATGCTGATGTGCATGAAAAGGAGGACACAAAAGCTGCAGCGGCAGCAGCCCAAGCCTCATCCGCTGCACCTACTTCTGAGACTAAACATGAAGAATATCCAGGATGGTCTCTTTCAGACGTCGACAAAATGGCCATTGACCCTCTTCAACTTGCACAGCTGAGCAAAAGGCTGGACGAGGATGAGGAAGACTATGATGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

287

Amino Acids

31.67

Weight (kDa)

5.31

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 3.7e-19 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 774
AccI GTMKAC 1 cut(s) 774
AciI CCGC 2 cut(s) 692, 714
AclWI GGATC 1 cut(s) 620
AcoI YGGCCR 1 cut(s) 783
AcsI RAATTY 2 cut(s) 187, 640
AcuI CTGAAG 1 cut(s) 506
AcyI GRCGYC 1 cut(s) 771
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 2 cut(s) 148, 213
AfiI CCNNNNNNNGG 2 cut(s) 269, 556
AgsI TTSAA 4 cut(s) 373, 595, 652, 800
AjiI CACGTC 1 cut(s) 455
AjnI CCWGG 2 cut(s) 337, 751
AluBI AGCT 6 cut(s) 13, 59, 176, 219, 686, 811
AluI AGCT 6 cut(s) 13, 59, 176, 219, 686, 811
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 3 cut(s) 488, 725, 765
AlwI GGATC 1 cut(s) 620
AoxI GGCC 2 cut(s) 445, 783
ApoI RAATTY 2 cut(s) 187, 640
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 637
BaeGI GKGCMC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 785
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 463
BccI CCATC 2 cut(s) 323, 750
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 2 cut(s) 339, 753
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 488, 725, 765
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 687
BlpI GCTNAGC 1 cut(s) 812
Bme1390I CCNGG 3 cut(s) 37, 339, 753
BmgBI CACGTC 1 cut(s) 455
BmrFI CCNGG 3 cut(s) 37, 339, 753
BmsI GCATC 4 cut(s) 205, 277, 375, 496
BoxI GACNNNNGTC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 846
Bpu1102I GCTNAGC 1 cut(s) 812
Bpu14I TTCGAA 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 771
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 3 cut(s) 400, 448, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 556
BseBI CCWGG 2 cut(s) 339, 753
BseDI CCNNGG 3 cut(s) 400, 448, 555
BseGI GGATG 5 cut(s) 73, 571, 710, 761, 838
BseLI CCNNNNNNNGG 2 cut(s) 269, 556
BseMII CTCAG 2 cut(s) 720, 803
BseRI GAGGAG 3 cut(s) 186, 380, 391
BseSI GKGCMC 1 cut(s) 96
BsgI GTGCAG 2 cut(s) 496, 702
BshFI GGCC 2 cut(s) 447, 785
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 2 cut(s) 269, 556
BsmAI GTCTC 3 cut(s) 488, 725, 765
BsmFI GGGAC 1 cut(s) 596
BsmI GAATGC 2 cut(s) 353, 658
BsnI GGCC 2 cut(s) 447, 785
Bso31I GGTCTC 1 cut(s) 765
Bsp119I TTCGAA 1 cut(s) 637
Bsp1286I GDGCHC 2 cut(s) 96, 463
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 2 cut(s) 307, 625
Bsp1720I GCTNAGC 1 cut(s) 812
Bsp19I CCATGG 2 cut(s) 400, 555
BspACI CCGC 2 cut(s) 692, 714
BspANI GGCC 2 cut(s) 447, 785
BspCNI CTCAG 2 cut(s) 721, 804
BspHI TCATGA 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 1 cut(s) 620
BspT104I TTCGAA 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 400, 448, 555
BssMI GATC 2 cut(s) 307, 625
BssNI GRCGYC 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 400, 555
Bst2UI CCWGG 2 cut(s) 339, 753
Bst4CI ACNGT 3 cut(s) 146, 359, 634
Bst6I CTCTTC 5 cut(s) 368, 418, 525, 801, 846
BstACI GRCGYC 1 cut(s) 771
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 239, 729, 812
BstDSI CCRYGG 3 cut(s) 400, 448, 555
BstF5I GGATG 5 cut(s) 73, 571, 710, 761, 838
BstKTI GATC 2 cut(s) 310, 628
BstMAI GTCTC 3 cut(s) 488, 725, 765
BstMBI GATC 2 cut(s) 307, 625
BstMWI GCNNNNNNNGC 8 cut(s) 299, 405, 414, 692, 695, 698, 704, 713
BstNI CCWGG 2 cut(s) 339, 753
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 3 cut(s) 35, 337, 751
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 846
BstXI CCANNNNNNTGG 1 cut(s) 562
BsuRI GGCC 2 cut(s) 447, 785
BtgI CCRYGG 3 cut(s) 400, 448, 555
BtrI CACGTC 1 cut(s) 455
BtsCI GGATG 5 cut(s) 73, 571, 710, 761, 838
BtsI GCAGTG 2 cut(s) 96, 418
BtsIMutI CAGTG 4 cut(s) 96, 198, 364, 418
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 490
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 2 cut(s) 147, 212
CviAII CATG 7 cut(s) 184, 275, 401, 491, 556, 665, 740
CviQI GTAC 2 cut(s) 147, 212
DdeI CTNAG 3 cut(s) 239, 729, 812
DpnI GATC 2 cut(s) 309, 627
DpnII GATC 2 cut(s) 307, 625
DraIII CACNNNGTG 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 783
Eam1104I CTCTTC 5 cut(s) 368, 418, 525, 801, 846
EarI CTCTTC 5 cut(s) 368, 418, 525, 801, 846
Eco130I CCWWGG 2 cut(s) 400, 555
Eco31I GGTCTC 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 337, 751
EcoT14I CCWWGG 2 cut(s) 400, 555
EcoT22I ATGCAT 1 cut(s) 353
ErhI CCWWGG 2 cut(s) 400, 555
FaeI CATG 7 cut(s) 187, 278, 404, 494, 559, 668, 743
FaqI GGGAC 1 cut(s) 596
FatI CATG 7 cut(s) 183, 274, 400, 490, 555, 664, 739
FblI GTMKAC 1 cut(s) 774
FokI GGATG 5 cut(s) 80, 578, 697, 768, 845
FspBI CTAG 1 cut(s) 297
HaeIII GGCC 2 cut(s) 447, 785
HapII CCGG 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 771
Hin1II CATG 7 cut(s) 187, 278, 404, 494, 559, 668, 743
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 3 cut(s) 500, 578, 620
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 4 cut(s) 212, 452, 547, 775
Hpy188I TCNGA 7 cut(s) 286, 505, 577, 625, 630, 730, 769
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 4 cut(s) 212, 452, 547, 775
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 3 cut(s) 146, 359, 634
HpyCH4IV ACGT 2 cut(s) 454, 771
HpyCH4V TGCA 9 cut(s) 55, 196, 351, 487, 513, 664, 689, 719, 806
HpyF10VI GCNNNNNNNGC 8 cut(s) 299, 405, 414, 692, 695, 698, 704, 713
HpyF3I CTNAG 3 cut(s) 239, 729, 812
HpySE526I ACGT 2 cut(s) 454, 771
Hsp92I GRCGYC 1 cut(s) 771
Hsp92II CATG 7 cut(s) 187, 278, 404, 494, 559, 668, 743
Kzo9I GATC 2 cut(s) 307, 625
LmnI GCTCC 2 cut(s) 173, 378
LweI GCATC 4 cut(s) 205, 277, 375, 496
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 1 cut(s) 297
MaeII ACGT 2 cut(s) 454, 771
MaeIII GTNAC 2 cut(s) 140, 359
MalI GATC 2 cut(s) 309, 627
MboI GATC 2 cut(s) 307, 625
MboII GAAGA 8 cut(s) 19, 339, 385, 435, 512, 755, 788, 851
MhlI GDGCHC 2 cut(s) 96, 463
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 4 cut(s) 48, 187, 246, 640
MluNI TGGCCA 1 cut(s) 785
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 653
Mox20I TGGCCA 1 cut(s) 785
Mph1103I ATGCAT 1 cut(s) 353
MscI TGGCCA 1 cut(s) 785
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 285, 560
Msp20I TGGCCA 1 cut(s) 785
MspA1I CMGCKG 3 cut(s) 692, 716, 811
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 3 cut(s) 37, 339, 753
Mva1269I GAATGC 2 cut(s) 353, 658
MvaI CCWGG 2 cut(s) 339, 753
MwoI GCNNNNNNNGC 8 cut(s) 299, 405, 414, 692, 695, 698, 704, 713
NciI CCSGG 1 cut(s) 37
NcoI CCATGG 2 cut(s) 400, 555
NdeII GATC 2 cut(s) 307, 625
NlaIII CATG 7 cut(s) 187, 278, 404, 494, 559, 668, 743
NmuCI GTSAC 2 cut(s) 140, 359
NsiI ATGCAT 1 cut(s) 353
NspV TTCGAA 1 cut(s) 637
PagI TCATGA 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PctI GAATGC 2 cut(s) 353, 658
PfeI GAWTC 2 cut(s) 500, 620
PflFI GACNNNGTC 1 cut(s) 432
PfoI TCCNGGA 1 cut(s) 751
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PshAI GACNNNNGTC 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 337, 751
PspGI CCWGG 2 cut(s) 337, 751
PstI CTGCAG 1 cut(s) 691
PsyI GACNNNGTC 1 cut(s) 432
PvuII CAGCTG 1 cut(s) 811
RsaI GTAC 2 cut(s) 148, 213
RsaNI GTAC 2 cut(s) 147, 212
RseI CAYNNNNRTG 2 cut(s) 285, 560
SalI GTCGAC 1 cut(s) 773
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 2 cut(s) 307, 625
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 3 cut(s) 37, 339, 753
SduI GDGCHC 2 cut(s) 96, 463
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 4 cut(s) 205, 277, 375, 496
SfcI CTRYAG 1 cut(s) 687
SfuI TTCGAA 1 cut(s) 637
SmiMI CAYNNNNRTG 2 cut(s) 285, 560
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 4 cut(s) 48, 187, 246, 640
SsiI CCGC 2 cut(s) 692, 714
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 35, 337, 751
StyI CCWWGG 2 cut(s) 400, 555
TaaI ACNGT 3 cut(s) 146, 359, 634
TaiI ACGT 2 cut(s) 457, 774
TaqI TCGA 6 cut(s) 15, 310, 436, 463, 637, 774
TasI AATT 4 cut(s) 48, 187, 246, 640
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 2 cut(s) 500, 620
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 4 cut(s) 96, 198, 364, 418
TseFI GTSAC 2 cut(s) 140, 359
Tsp45I GTSAC 2 cut(s) 140, 359
TspDTI ATGAA 5 cut(s) 200, 360, 633, 681, 756
TspRI CASTG 4 cut(s) 96, 198, 364, 418
Tth111I GACNNNGTC 1 cut(s) 432
XapI RAATTY 2 cut(s) 187, 640
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 1 cut(s) 297
ZraI GACGTC 1 cut(s) 772
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.