Rh1DG097100

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011860
Physical Location & Seq
Reverse (-)
18360142 .. 18379246
19105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG097100.1

Sequence Viewer

Length: 411 bp
ATGAATTCAGTGCATCTAAAACATTGTGTACAGAGCTACAATGTGTTTGATTTTCTAAGGGACATTGTCAGTAGGATTAGTAAACCTAATATAAACCCTGCTATGGCGGTGGACGATGTCTCTGAGTCAAAGGAGTTATTGAAGGAAAATGTCAGAGTCCCTGATGAATCTGATCCGACAGTTCCAAATTTTGACTTGAATGCCGATGTAGATGAGAATGAGGACACAAAAGCTGCAGCGGTAGCAGCCAGCAGGCCAAGCCTCATCGCACCTACTTTTGAGACTAAACATGAAGAATACCCAGGATGGTGTCTTTCAGACGTGGACAAAATGGCCATTGACTCTCTTCAACTTGCACAGCTGAGCAAAAGGCTGGACGAGGATGAGGAAGACTATGACGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

4.27

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 107, 239
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 2 cut(s) 4, 187
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 3 cut(s) 142, 199, 350
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 3 cut(s) 36, 233, 361
AluI AGCT 3 cut(s) 36, 233, 361
Alw26I GTCTC 2 cut(s) 124, 275
AlwI GGATC 1 cut(s) 167
AoxI GGCC 2 cut(s) 254, 333
ApeKI GCWGC 3 cut(s) 233, 236, 245
ApoI RAATTY 2 cut(s) 4, 187
BalI TGGCCA 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 220, 248, 257
BccI CCATC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 124, 275
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 3 cut(s) 234, 237, 246
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 3 cut(s) 235, 238, 247
Bme1390I CCNGG 1 cut(s) 303
BmgBI CACGTC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 2 cut(s) 311, 388
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 114, 353
BseXI GCAGC 3 cut(s) 220, 248, 257
BshFI GGCC 2 cut(s) 256, 335
BslFI GGGAC 2 cut(s) 74, 143
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 124, 275
BsmFI GGGAC 2 cut(s) 74, 143
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 2 cut(s) 256, 335
Bsp1407I TGTACA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 2 cut(s) 107, 239
BspANI GGCC 2 cut(s) 256, 335
BspCNI CTCAG 2 cut(s) 115, 354
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 351, 396
BstAUI TGTACA 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 250, 254
BstDEI CTNAG 3 cut(s) 56, 123, 362
BstF5I GGATG 2 cut(s) 311, 388
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 2 cut(s) 124, 275
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 242, 245, 258
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 220, 248, 257
BstV2I GAAGAC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 256, 335
BtgZI GCGATG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 311, 388
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 250, 254
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 290
CviJI RGCY 9 cut(s) 36, 233, 248, 256, 261, 335, 361, 373, 408
CviKI_1 RGCY 9 cut(s) 36, 233, 248, 256, 261, 335, 361, 373, 408
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 3 cut(s) 56, 123, 362
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 351, 396
EarI CTCTTC 2 cut(s) 351, 396
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 293
FaiI YATR 4 cut(s) 92, 104, 291, 396
FaqI GGGAC 2 cut(s) 74, 143
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 234, 237, 246
FokI GGATG 2 cut(s) 318, 395
Fsp4HI GCNGC 3 cut(s) 234, 237, 246
GluI GCNGC 3 cut(s) 234, 237, 246
HaeIII GGCC 2 cut(s) 256, 335
Hin1II CATG 1 cut(s) 293
HinfI GANTC 4 cut(s) 125, 156, 167, 341
Hpy166II GTNNAC 4 cut(s) 29, 83, 112, 325
Hpy188I TCNGA 5 cut(s) 124, 155, 172, 177, 319
Hpy8I GTNNAC 4 cut(s) 29, 83, 112, 325
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 13, 236, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 245, 258
HpyF3I CTNAG 3 cut(s) 56, 123, 362
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 111, 174, 238, 262, 288, 315, 359
Lsp1109I GCAGC 3 cut(s) 220, 248, 257
LweI GCATC 1 cut(s) 22
MaeII ACGT 1 cut(s) 321
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 305, 338, 401
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 2 cut(s) 4, 187
MluNI TGGCCA 1 cut(s) 335
MlyI GAGTC 3 cut(s) 134, 165, 335
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 5 cut(s) 214, 272, 373, 379, 397
Mox20I TGGCCA 1 cut(s) 335
MscI TGGCCA 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 239, 361
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 242, 245, 258
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 293
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 167
PflFI GACNNNGTC 2 cut(s) 65, 116
PkrI GCNGC 3 cut(s) 235, 238, 247
PleI GAGTC 3 cut(s) 133, 164, 335
PpsI GAGTC 3 cut(s) 133, 164, 335
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PstI CTGCAG 1 cut(s) 238
PsyI GACNNNGTC 2 cut(s) 65, 116
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SatI GCNGC 3 cut(s) 234, 237, 246
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 3 cut(s) 134, 165, 335
ScrFI CCNGG 1 cut(s) 303
SetI ASST 6 cut(s) 38, 88, 235, 274, 324, 363
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 4, 187
SsiI CCGC 2 cut(s) 107, 239
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 324
TasI AATT 2 cut(s) 4, 187
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 1 cut(s) 15
TseI GCWGC 3 cut(s) 233, 236, 245
TspDTI ATGAA 3 cut(s) 17, 180, 306
TspRI CASTG 1 cut(s) 15
Tth111I GACNNNGTC 2 cut(s) 65, 116
XapI RAATTY 2 cut(s) 4, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.