Rh1CG090700

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011860
Physical Location & Seq
Reverse (-)
19288003 .. 19297645
9643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG090700.1

Sequence Viewer

Length: 663 bp
ATGCAAGCTGATGAGGATGTTGGCAAGATAGCATTAGCATTGCCCGTTTTAGTTTCTAAAGCATTAGAGTTGTTTTTACAAGACCTTTGTGACCGTACATACGAGATAACTCTCCAAAGAGGAGCTAAAACCATGAATTCAGTGCATCTAAAACATTGTGTACAGAGCTACAATGTGTTTGATTTTCTAAGGGACATTGTCAGTAGGGTGCCTGACTATGGTCATGGTCATTCTGATGCTGCTGCTGATGATCGAGCCATCACAAAGAGAAGAAAACCACCAGGTGATGAATGCATCGACAGTGATGAGGAGTTGAAGAGGAGCAAGATGAGCAGCAAACCTAATATAAACGCTGCTATGGCGGTGGACGATGTTTCTGAGTCAAAGGAGTTATTGAAGGAAAATGTCAGTGTCCCTGATGAATCTGATCCGACAGTTCGAAATTTTGACTTGAATGCCGATGTACATGAGAATGAGGACACAAAAGCTGCAGCGGCAGCAGCCCAAGCCTTATCCACTGCACCTACTTCTGAGACTAAACATGAAGAATACCCAGGATGGTCTCTTTCAGACGTGGACAAAATGGCCATTGACCCTCTTCAACTTGCACAGCTGAGCAAAAGGCTGGACGAGGATGAGGAAGACTATGACGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

220

Amino Acids

24.41

Weight (kDa)

4.52

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 1 - 54 5.7e-11 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 2 cut(s) 362, 494
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 2 cut(s) 136, 442
AdeI CACNNNGTG 1 cut(s) 284
AfaI GTAC 3 cut(s) 97, 162, 465
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 4 cut(s) 316, 397, 454, 602
AjiI CACGTC 1 cut(s) 574
AjnI CCWGG 2 cut(s) 280, 553
AluBI AGCT 5 cut(s) 8, 125, 168, 488, 613
AluI AGCT 5 cut(s) 8, 125, 168, 488, 613
Alw26I GTCTC 2 cut(s) 527, 567
AlwI GGATC 1 cut(s) 422
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 8 cut(s) 239, 242, 333, 353, 488, 491, 497, 500
ApoI RAATTY 2 cut(s) 136, 442
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 439
BalI TGGCCA 1 cut(s) 587
BanI GGYRCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 648
BbvI GCAGC 8 cut(s) 226, 229, 340, 345, 475, 503, 509, 512
BccI CCATC 2 cut(s) 266, 552
BciT130I CCWGG 2 cut(s) 282, 555
BcoDI GTCTC 2 cut(s) 527, 567
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 9 cut(s) 240, 243, 334, 354, 489, 492, 495, 498, 501
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 9 cut(s) 241, 244, 335, 355, 490, 493, 496, 499, 502
Bme1390I CCNGG 2 cut(s) 282, 555
BmgBI CACGTC 1 cut(s) 574
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 282, 555
BmsI GCATC 3 cut(s) 154, 226, 303
BoxI GACNNNNGTC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 648
Bpu1102I GCTNAGC 1 cut(s) 614
Bpu14I TTCGAA 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 38
BseBI CCWGG 2 cut(s) 282, 555
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 3 cut(s) 22, 563, 640
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 3 cut(s) 369, 522, 605
BseRI GAGGAG 3 cut(s) 135, 323, 334
BseXI GCAGC 8 cut(s) 226, 229, 340, 345, 475, 503, 509, 512
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 1 cut(s) 208
BslFI GGGAC 2 cut(s) 206, 398
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 527, 567
BsmFI GGGAC 2 cut(s) 206, 398
BsmI GAATGC 2 cut(s) 296, 460
BsnI GGCC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 439
Bsp1407I TGTACA 2 cut(s) 160, 463
Bsp143I GATC 2 cut(s) 250, 427
Bsp1720I GCTNAGC 1 cut(s) 614
BspACI CCGC 2 cut(s) 362, 494
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 3 cut(s) 370, 523, 606
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 1 cut(s) 422
BspT104I TTCGAA 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 38
BsrGI TGTACA 2 cut(s) 160, 463
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 2 cut(s) 250, 427
Bst2UI CCWGG 2 cut(s) 282, 555
Bst4CI ACNGT 3 cut(s) 95, 302, 436
Bst6I CTCTTC 3 cut(s) 311, 603, 648
BstAUI TGTACA 2 cut(s) 160, 463
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 188, 378, 531, 614
BstF5I GGATG 3 cut(s) 22, 563, 640
BstKTI GATC 2 cut(s) 253, 430
BstMAI GTCTC 2 cut(s) 527, 567
BstMBI GATC 2 cut(s) 250, 427
BstMWI GCNNNNNNNGC 6 cut(s) 330, 359, 494, 497, 500, 506
BstNI CCWGG 2 cut(s) 282, 555
BstPAI GACNNNNGTC 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 280, 553
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 8 cut(s) 226, 229, 340, 345, 475, 503, 509, 512
BstV2I GAAGAC 1 cut(s) 648
BsuRI GGCC 1 cut(s) 587
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 3 cut(s) 22, 563, 640
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 4 cut(s) 147, 307, 415, 516
Cac8I GCNNGC 1 cut(s) 6
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 3 cut(s) 96, 161, 464
CviAII CATG 4 cut(s) 133, 224, 467, 542
CviQI GTAC 3 cut(s) 96, 161, 464
DdeI CTNAG 4 cut(s) 188, 378, 531, 614
DpnI GATC 2 cut(s) 252, 429
DpnII GATC 2 cut(s) 250, 427
DraIII CACNNNGTG 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 3 cut(s) 311, 603, 648
EarI CTCTTC 3 cut(s) 311, 603, 648
Eco31I GGTCTC 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 280, 553
EcoT22I ATGCAT 1 cut(s) 296
FaeI CATG 4 cut(s) 136, 227, 470, 545
FaiI YATR 9 cut(s) 100, 134, 219, 225, 347, 359, 468, 543, 648
FaqI GGGAC 2 cut(s) 206, 398
FatI CATG 4 cut(s) 132, 223, 466, 541
Fnu4HI GCNGC 9 cut(s) 240, 243, 334, 354, 489, 492, 495, 498, 501
FokI GGATG 3 cut(s) 29, 570, 647
Fsp4HI GCNGC 9 cut(s) 240, 243, 334, 354, 489, 492, 495, 498, 501
GluI GCNGC 9 cut(s) 240, 243, 334, 354, 489, 492, 495, 498, 501
HaeIII GGCC 1 cut(s) 587
Hin1II CATG 4 cut(s) 136, 227, 470, 545
HinfI GANTC 2 cut(s) 380, 422
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 161, 367, 577
Hpy188I TCNGA 6 cut(s) 235, 379, 427, 432, 532, 571
Hpy8I GTNNAC 3 cut(s) 161, 367, 577
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 3 cut(s) 95, 302, 436
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 6 cut(s) 4, 145, 294, 491, 521, 608
HpyF10VI GCNNNNNNNGC 6 cut(s) 330, 359, 494, 497, 500, 506
HpyF3I CTNAG 4 cut(s) 188, 378, 531, 614
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 4 cut(s) 136, 227, 470, 545
Kzo9I GATC 2 cut(s) 250, 427
LmnI GCTCC 2 cut(s) 122, 321
LpnPI CCDG 7 cut(s) 225, 267, 294, 429, 540, 567, 611
Lsp1109I GCAGC 8 cut(s) 226, 229, 340, 345, 475, 503, 509, 512
LweI GCATC 3 cut(s) 154, 226, 303
MabI ACCWGGT 1 cut(s) 280
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 252, 429
MboI GATC 2 cut(s) 250, 427
MboII GAAGA 5 cut(s) 282, 328, 557, 590, 653
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 2 cut(s) 136, 442
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 9 cut(s) 7, 113, 301, 312, 469, 606, 625, 631, 649
Mox20I TGGCCA 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 296
MscI TGGCCA 1 cut(s) 587
MslI CAYNNNNRTG 2 cut(s) 234, 471
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 2 cut(s) 494, 613
MspR9I CCNGG 2 cut(s) 282, 555
Mva1269I GAATGC 2 cut(s) 296, 460
MvaI CCWGG 2 cut(s) 282, 555
MwoI GCNNNNNNNGC 6 cut(s) 330, 359, 494, 497, 500, 506
NdeII GATC 2 cut(s) 250, 427
NlaIII CATG 4 cut(s) 136, 227, 470, 545
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 296
NspV TTCGAA 1 cut(s) 439
PctI GAATGC 2 cut(s) 296, 460
PfeI GAWTC 1 cut(s) 422
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 9 cut(s) 241, 244, 335, 355, 490, 493, 496, 499, 502
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PshAI GACNNNNGTC 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 280, 553
PspGI CCWGG 2 cut(s) 280, 553
PspN4I GGNNCC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 3 cut(s) 97, 162, 465
RsaNI GTAC 3 cut(s) 96, 161, 464
RseI CAYNNNNRTG 2 cut(s) 234, 471
SatI GCNGC 9 cut(s) 240, 243, 334, 354, 489, 492, 495, 498, 501
Sau3AI GATC 2 cut(s) 250, 427
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 282, 555
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 3 cut(s) 154, 226, 303
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 439
SmiMI CAYNNNNRTG 2 cut(s) 234, 471
Sse9I AATT 2 cut(s) 136, 442
SsiI CCGC 2 cut(s) 362, 494
StyD4I CCNGG 2 cut(s) 280, 553
TaaI ACNGT 3 cut(s) 95, 302, 436
TaiI ACGT 1 cut(s) 576
TaqI TCGA 3 cut(s) 253, 297, 439
TasI AATT 2 cut(s) 136, 442
TatI WGTACW 2 cut(s) 160, 463
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 1 cut(s) 422
TscAI CASTG 4 cut(s) 147, 307, 415, 523
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 8 cut(s) 239, 242, 333, 353, 488, 491, 497, 500
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 149, 303, 435, 558
TspRI CASTG 4 cut(s) 147, 307, 415, 523
Tth111I GACNNNGTC 1 cut(s) 197
XapI RAATTY 2 cut(s) 136, 442
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.