Rroxscaffold_4G00321380

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011860
Physical Location & Seq
Forward (+)
50762623 .. 50767793
5171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321380.1

Sequence Viewer

Length: 855 bp
ATGAGGAAGAAGCTCGATACGCGTTTCCCTGCTGCCCGGATCAAAAAAATTATGCAAGCTGATGAGGACGTTGGCAAGATAGCATTAGCAGTGCCTGTTTTAGTTTCTAAAGCATTAGAGTTATTTTTACAAGACCTTTGTGACCGTACATACGAGATAACTCTCCAAAGAGGAGCTAAAACCATGAATTCAGTGCATCTAAAACATTGTGTACAGAGCTACAATGTGTTTGATTTTCTAAGGGACATTGTCAGTAGGGTGCCTGACTATGGTCATGGTCATTCTGATGCTGCTGCTGATGATCGAGCCATCACAAAGAGAAGAAAACCACCAGGTGATGAATGCATTGACAGTGACGAGGAGTTGAAGAGGAGCAAGATGCTTGAGGTGAGCCATGGAAGCAGTAGTGGCAGGGGAAGAGGACGGGGTCGAGGACGAGGCCGTGGACGCGGTGCTCGAACTACTGAAAGAGAGCTTGTGCATCATGAGACTGAATCTGAACCCTGCACATCTCTTCAGCAGAGCAGCAAACCTAATATAAACCCTGCTATGGCGGTGGACGATGTTTCTGAGTCAAAGGAGTTATTGAAGGAAAATGTAAGTGTCCCTGATGAATCTGATCCGACAGTTCGAAATTTTGACTTGAATGCCGATGTACATGAGAATGAGGACACAAAAGCTGCAGCGGCAGCAGCCCAAGCCTCATCCGCTGCACCTACTTCTGAGACTAAACATGAAGAATACCCAGGATGGTCTCTTTCAGATGTGGACAAAATGGCCATTGACCCTCTTCAACTTGCACAAATGAGCAAAAGGCTGGACGAGGATGAGGAAGACTATGATGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

284

Amino Acids

31.53

Weight (kDa)

5.24

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 3.6e-19 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccII CGCG 2 cut(s) 22, 450
AciI CCGC 4 cut(s) 450, 554, 686, 708
AclWI GGATC 2 cut(s) 47, 614
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 2 cut(s) 187, 634
AcuI CTGAAG 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 3 cut(s) 148, 213, 657
AfiI CCNNNNNNNGG 2 cut(s) 269, 550
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 4 cut(s) 367, 589, 646, 794
AjnI CCWGG 2 cut(s) 331, 745
AluBI AGCT 6 cut(s) 13, 59, 176, 219, 475, 680
AluI AGCT 6 cut(s) 13, 59, 176, 219, 475, 680
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 3 cut(s) 482, 719, 759
AlwI GGATC 2 cut(s) 47, 614
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 2 cut(s) 439, 777
ApeKI GCWGC 9 cut(s) 32, 290, 293, 525, 680, 683, 689, 692, 710
ApoI RAATTY 2 cut(s) 187, 634
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 347, 400
AsuII TTCGAA 1 cut(s) 631
BalI TGGCCA 1 cut(s) 779
BanI GGYRCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 9 cut(s) 19, 277, 280, 537, 667, 695, 697, 701, 704
BccI CCATC 2 cut(s) 317, 744
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 2 cut(s) 333, 747
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 482, 719, 759
BfmI CTRYAG 1 cut(s) 681
Bme1390I CCNGG 3 cut(s) 37, 333, 747
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 3 cut(s) 37, 333, 747
BmsI GCATC 4 cut(s) 205, 277, 369, 490
BoxI GACNNNNGTC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 840
Bpu14I TTCGAA 1 cut(s) 631
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 759
BsaJI CCNNGG 3 cut(s) 394, 442, 745
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 550
BseBI CCWGG 2 cut(s) 333, 747
BseDI CCNNGG 3 cut(s) 394, 442, 745
BseGI GGATG 3 cut(s) 704, 755, 832
BseLI CCNNNNNNNGG 2 cut(s) 269, 550
BseMII CTCAG 2 cut(s) 561, 714
BseRI GAGGAG 3 cut(s) 186, 374, 385
BseXI GCAGC 9 cut(s) 19, 277, 280, 537, 667, 695, 697, 701, 704
BsgI GTGCAG 2 cut(s) 490, 696
Bsh1236I CGCG 2 cut(s) 22, 450
BshFI GGCC 2 cut(s) 441, 779
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 2 cut(s) 257, 590
BslI CCNNNNNNNGG 2 cut(s) 269, 550
BsmAI GTCTC 3 cut(s) 482, 719, 759
BsmFI GGGAC 2 cut(s) 257, 590
BsmI GAATGC 2 cut(s) 347, 652
BsnI GGCC 2 cut(s) 441, 779
Bso31I GGTCTC 1 cut(s) 759
Bsp119I TTCGAA 1 cut(s) 631
Bsp1286I GDGCHC 1 cut(s) 457
Bsp1407I TGTACA 2 cut(s) 211, 655
Bsp143I GATC 3 cut(s) 39, 301, 619
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 4 cut(s) 450, 554, 686, 708
BspANI GGCC 2 cut(s) 441, 779
BspCNI CTCAG 2 cut(s) 562, 715
BspFNI CGCG 2 cut(s) 22, 450
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 2 cut(s) 47, 614
BspT104I TTCGAA 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 759
BsrGI TGTACA 2 cut(s) 211, 655
BssECI CCNNGG 3 cut(s) 394, 442, 745
BssMI GATC 3 cut(s) 39, 301, 619
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 2 cut(s) 333, 747
Bst4CI ACNGT 3 cut(s) 146, 353, 628
Bst6I CTCTTC 5 cut(s) 362, 412, 519, 795, 840
BstAUI TGTACA 2 cut(s) 211, 655
BstBI TTCGAA 1 cut(s) 631
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 239, 570, 723
BstDSI CCRYGG 2 cut(s) 394, 442
BstF5I GGATG 3 cut(s) 704, 755, 832
BstFNI CGCG 2 cut(s) 22, 450
BstKTI GATC 3 cut(s) 42, 304, 622
BstMAI GTCTC 3 cut(s) 482, 719, 759
BstMBI GATC 3 cut(s) 39, 301, 619
BstMWI GCNNNNNNNGC 9 cut(s) 19, 399, 408, 447, 686, 689, 692, 698, 707
BstNI CCWGG 2 cut(s) 333, 747
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 3 cut(s) 35, 331, 745
BstSFI CTRYAG 1 cut(s) 681
BstUI CGCG 2 cut(s) 22, 450
BstV1I GCAGC 9 cut(s) 19, 277, 280, 537, 667, 695, 697, 701, 704
BstV2I GAAGAC 1 cut(s) 840
BsuRI GGCC 2 cut(s) 441, 779
BtgI CCRYGG 2 cut(s) 394, 442
BtsCI GGATG 3 cut(s) 704, 755, 832
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 3 cut(s) 96, 198, 358
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 484
CseI GACGC 1 cut(s) 456
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 3 cut(s) 147, 212, 656
CviAII CATG 6 cut(s) 184, 275, 395, 485, 659, 734
CviQI GTAC 3 cut(s) 147, 212, 656
DdeI CTNAG 3 cut(s) 239, 570, 723
DpnI GATC 3 cut(s) 41, 303, 621
DpnII GATC 3 cut(s) 39, 301, 619
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 5 cut(s) 362, 412, 519, 795, 840
EarI CTCTTC 5 cut(s) 362, 412, 519, 795, 840
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 759
Eco57I CTGAAG 1 cut(s) 500
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 331, 745
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 6 cut(s) 187, 278, 398, 488, 662, 737
FaqI GGGAC 2 cut(s) 257, 590
FatI CATG 6 cut(s) 183, 274, 394, 484, 658, 733
FokI GGATG 3 cut(s) 691, 762, 839
HaeIII GGCC 2 cut(s) 441, 779
HapII CCGG 1 cut(s) 37
HgaI GACGC 1 cut(s) 456
Hin1II CATG 6 cut(s) 187, 278, 398, 488, 662, 737
HinfI GANTC 3 cut(s) 494, 572, 614
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 347, 400
Hpy166II GTNNAC 4 cut(s) 212, 446, 559, 769
Hpy188I TCNGA 7 cut(s) 286, 499, 571, 619, 624, 724, 763
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 4 cut(s) 212, 446, 559, 769
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 3 cut(s) 146, 353, 628
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 8 cut(s) 55, 196, 345, 481, 507, 683, 713, 800
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 399, 408, 447, 686, 689, 692, 698, 707
HpyF3I CTNAG 3 cut(s) 239, 570, 723
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 6 cut(s) 187, 278, 398, 488, 662, 737
Kzo9I GATC 3 cut(s) 39, 301, 619
LmnI GCTCC 2 cut(s) 173, 372
Lsp1109I GCAGC 9 cut(s) 19, 277, 280, 537, 667, 695, 697, 701, 704
LweI GCATC 4 cut(s) 205, 277, 369, 490
MabI ACCWGGT 1 cut(s) 331
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 140, 353
MalI GATC 3 cut(s) 41, 303, 621
MboI GATC 3 cut(s) 39, 301, 619
MboII GAAGA 8 cut(s) 19, 333, 379, 429, 506, 749, 782, 845
MhlI GDGCHC 1 cut(s) 457
MlsI TGGCCA 1 cut(s) 779
MluCI AATT 3 cut(s) 48, 187, 634
MluI ACGCGT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 647
Mox20I TGGCCA 1 cut(s) 779
Mph1103I ATGCAT 1 cut(s) 347
MscI TGGCCA 1 cut(s) 779
MslI CAYNNNNRTG 2 cut(s) 285, 663
Msp20I TGGCCA 1 cut(s) 779
MspA1I CMGCKG 2 cut(s) 686, 710
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 3 cut(s) 37, 333, 747
Mva1269I GAATGC 2 cut(s) 347, 652
MvaI CCWGG 2 cut(s) 333, 747
MvnI CGCG 2 cut(s) 22, 450
MwoI GCNNNNNNNGC 9 cut(s) 19, 399, 408, 447, 686, 689, 692, 698, 707
NciI CCSGG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 394
NdeII GATC 3 cut(s) 39, 301, 619
NlaIII CATG 6 cut(s) 187, 278, 398, 488, 662, 737
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 2 cut(s) 140, 353
NsiI ATGCAT 1 cut(s) 347
NspV TTCGAA 1 cut(s) 631
PagI TCATGA 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 454
PctI GAATGC 2 cut(s) 347, 652
PfeI GAWTC 2 cut(s) 494, 614
PflFI GACNNNGTC 2 cut(s) 248, 426
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PshAI GACNNNNGTC 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 331, 745
PspGI CCWGG 2 cut(s) 331, 745
PspN4I GGNNCC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 95
PsyI GACNNNGTC 2 cut(s) 248, 426
RsaI GTAC 3 cut(s) 148, 213, 657
RsaNI GTAC 3 cut(s) 147, 212, 656
RseI CAYNNNNRTG 2 cut(s) 285, 663
Sau3AI GATC 3 cut(s) 39, 301, 619
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 3 cut(s) 37, 333, 747
SduI GDGCHC 1 cut(s) 457
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 4 cut(s) 205, 277, 369, 490
SfcI CTRYAG 1 cut(s) 681
SfuI TTCGAA 1 cut(s) 631
SmiMI CAYNNNNRTG 2 cut(s) 285, 663
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 3 cut(s) 48, 187, 634
SsiI CCGC 4 cut(s) 450, 554, 686, 708
StyD4I CCNGG 3 cut(s) 35, 331, 745
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 146, 353, 628
TaiI ACGT 1 cut(s) 72
TaqI TCGA 5 cut(s) 15, 304, 430, 457, 631
TasI AATT 3 cut(s) 48, 187, 634
TatI WGTACW 2 cut(s) 211, 655
TauI GCSGC 1 cut(s) 689
TfiI GAWTC 2 cut(s) 494, 614
TscAI CASTG 3 cut(s) 96, 198, 358
TseFI GTSAC 2 cut(s) 140, 353
TseI GCWGC 9 cut(s) 32, 290, 293, 525, 680, 683, 689, 692, 710
Tsp45I GTSAC 2 cut(s) 140, 353
TspDTI ATGAA 4 cut(s) 200, 354, 627, 750
TspRI CASTG 3 cut(s) 96, 198, 358
Tth111I GACNNNGTC 2 cut(s) 248, 426
XapI RAATTY 2 cut(s) 187, 634
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.