RchiOBHm_Chr1g0328631

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011860
Physical Location & Seq
Reverse (-)
18053285 .. 18056889
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55803

Sequence Viewer

Length: 180 bp
ATGCAGGTCCGGATCAAAAAAATTATGCAAGCTGATGAGGATGTTGGCAAGATAGCATTAGCAGGGATCCGGCTCCTCAAAACAAAAGCATTAGAGTTATTTTTACAAGACCTTTGTGACCGTACATACGAGATAACTCTCCAAAGAGGAGCTAAAACCATGAATTCAGTGCAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

59

Amino Acids

6.72

Weight (kDa)

9.36

Isoelectric Point (pI)

13.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 4 - 55 5.7e-10 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 9
AclWI GGATC 3 cut(s) 20, 61, 74
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 124
AluBI AGCT 3 cut(s) 32, 152, 175
AluI AGCT 3 cut(s) 32, 152, 175
AlwI GGATC 3 cut(s) 20, 61, 74
Aor13HI TCCGGA 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 7
BamHI GGATCC 1 cut(s) 66
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 68, 74
BsaWI WCCGGW 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 9
BseGI GGATG 1 cut(s) 46
BseRI GAGGAG 2 cut(s) 65, 162
BsiSI CCGG 2 cut(s) 10, 70
Bsp13I TCCGGA 1 cut(s) 9
Bsp143I GATC 2 cut(s) 12, 66
BspEI TCCGGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 68, 74
BspPI GGATC 3 cut(s) 20, 61, 74
BssMI GATC 2 cut(s) 12, 66
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 15, 69
BstMBI GATC 2 cut(s) 12, 66
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 160
CviJI RGCY 4 cut(s) 32, 73, 152, 175
CviKI_1 RGCY 4 cut(s) 32, 73, 152, 175
CviQI GTAC 1 cut(s) 123
DpnI GATC 2 cut(s) 14, 68
DpnII GATC 2 cut(s) 12, 66
Eco47I GGWCC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 163
FaeI CATG 1 cut(s) 163
FaiI YATR 3 cut(s) 26, 127, 161
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
HapII CCGG 2 cut(s) 10, 70
Hin1II CATG 1 cut(s) 163
HpaII CCGG 2 cut(s) 10, 70
Hpy188III TCNNGA 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 4, 28, 172
Hsp92II CATG 1 cut(s) 163
Kpn2I TCCGGA 1 cut(s) 9
Kzo9I GATC 2 cut(s) 12, 66
LmnI GCTCC 2 cut(s) 78, 149
LpnPI CCDG 3 cut(s) 23, 48, 83
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 14, 68
MboI GATC 2 cut(s) 12, 66
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 21, 163
MnlI CCTC 3 cut(s) 31, 86, 140
MroI TCCGGA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 10, 70
NdeII GATC 2 cut(s) 12, 66
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 68, 74
NmuCI GTSAC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 68, 74
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 12, 66
Sau96I GGNCC 1 cut(s) 7
SetI ASST 5 cut(s) 9, 34, 114, 154, 177
SgeI CNNG 9 cut(s) 17, 22, 41, 61, 75, 82, 119, 142, 172
SinI GGWCC 1 cut(s) 7
Sse9I AATT 2 cut(s) 21, 163
TaaI ACNGT 1 cut(s) 122
TasI AATT 2 cut(s) 21, 163
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.