Rh1AG094500

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011860
Physical Location & Seq
Reverse (-)
16456989 .. 16461696
4708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG094500.1

Sequence Viewer

Length: 879 bp
ATGAGGAAGAAGCTCGATACGCGTTTCCCTGCTGCCCGGATCAAAAAAATTATGCAAGCTGATGAGGATGTTGGCAAGATAGCATTAGCAGTGCCCGTTTTAGTTTCAAAAGCATTAGAGTTATTTTTACAGGACCTTTGTGACCGTACATACGAGATAACTCTCCAAAGAGGAGCTAAAACCATGAATTCAGTGCATCTAAAACATTGTGTACAGAGCTACAATGTGTTTGATTTTCTAAGGGACATTGTCAGTAGGGTGCCTGACTATGGTCATGGTCATTCTGATGCTGCTGCTGATGATCGAGCCATCACAAAGAGAAGAAAACCACCAGGTGATGAATGCATTGACAGTGATGAGGAGTTGAAGAGGAGCAAGATGCTTGAGGTGAGCCATGGAAGCAGTAGTGGCAGGGGAAGAGGACGGGGTCGAGGACGAGGCCGTGGACGCGGTGCTCGAACTACTGAAAGAGAGCCTGTGCATCATGAGACTGAATCTGAACCTTGCACATCTCTTCAGCAGAGCAGCAAACTTAATATAAACCCTGGTATGGCGGTGGACGATGTTTCTGAGTCAAAGGAGTTATTGAAGGAAAATGTCAGTGTCCCTGATGAATCTGATCCGACAGTTAGAAATTTTGACTTGAATGCCGATGTACATGAGAATGAGGACACAAAAGCTGCAGCGGCAGCAGCCCAAGCCTCATCCGCGGCAGCAGCCCAAGCCTCATCCGCTGCACCTACTTCTGAGACTAAACATGAAGAATACCCAGGATGGTCTCTTTCAGACGTGGACAAAATGGCCATTGACCCTCTTCAACTTGCACAAATGAGCAAAAGGCTGGACGAGGATGAGGAAGACTATGACGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

292

Amino Acids

32.18

Weight (kDa)

5.24

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 3.8e-19 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccII CGCG 3 cut(s) 22, 450, 710
AciI CCGC 6 cut(s) 450, 554, 686, 708, 710, 732
AclWI GGATC 2 cut(s) 47, 614
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 2 cut(s) 187, 634
AcuI CTGAAG 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 3 cut(s) 148, 213, 657
AfiI CCNNNNNNNGG 2 cut(s) 269, 550
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 5 cut(s) 108, 367, 589, 646, 818
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 3 cut(s) 331, 544, 769
AluBI AGCT 5 cut(s) 13, 59, 176, 219, 680
AluI AGCT 5 cut(s) 13, 59, 176, 219, 680
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 3 cut(s) 482, 743, 783
AlwI GGATC 2 cut(s) 47, 614
AoxI GGCC 2 cut(s) 439, 801
ApoI RAATTY 2 cut(s) 187, 634
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 347, 400
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 803
BanI GGYRCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 1 cut(s) 457
BccI CCATC 2 cut(s) 317, 768
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 3 cut(s) 333, 546, 771
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 482, 743, 783
BfmI CTRYAG 1 cut(s) 681
Bme1390I CCNGG 4 cut(s) 37, 333, 546, 771
Bme18I GGWCC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 4 cut(s) 37, 333, 546, 771
BmsI GCATC 4 cut(s) 205, 277, 369, 490
BoxI GACNNNNGTC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 783
BsaJI CCNNGG 5 cut(s) 394, 442, 544, 708, 769
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 550
BseBI CCWGG 3 cut(s) 333, 546, 771
BseDI CCNNGG 5 cut(s) 394, 442, 544, 708, 769
BseGI GGATG 5 cut(s) 73, 704, 728, 779, 856
BseLI CCNNNNNNNGG 2 cut(s) 269, 550
BseMII CTCAG 2 cut(s) 561, 738
BseRI GAGGAG 3 cut(s) 186, 374, 385
BseSI GKGCMC 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 3 cut(s) 22, 450, 710
BshFI GGCC 2 cut(s) 441, 803
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 2 cut(s) 257, 590
BslI CCNNNNNNNGG 2 cut(s) 269, 550
BsmAI GTCTC 3 cut(s) 482, 743, 783
BsmFI GGGAC 2 cut(s) 257, 590
BsmI GAATGC 2 cut(s) 347, 652
BsnI GGCC 2 cut(s) 441, 803
Bso31I GGTCTC 1 cut(s) 783
Bsp1286I GDGCHC 2 cut(s) 96, 457
Bsp1407I TGTACA 2 cut(s) 211, 655
Bsp143I GATC 3 cut(s) 39, 301, 619
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 6 cut(s) 450, 554, 686, 708, 710, 732
BspANI GGCC 2 cut(s) 441, 803
BspCNI CTCAG 2 cut(s) 562, 739
BspFNI CGCG 3 cut(s) 22, 450, 710
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 2 cut(s) 47, 614
BspT107I GGYRCC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 783
BsrGI TGTACA 2 cut(s) 211, 655
BssECI CCNNGG 5 cut(s) 394, 442, 544, 708, 769
BssMI GATC 3 cut(s) 39, 301, 619
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 3 cut(s) 333, 546, 771
Bst4CI ACNGT 3 cut(s) 146, 353, 628
Bst6I CTCTTC 5 cut(s) 362, 412, 519, 819, 864
BstAUI TGTACA 2 cut(s) 211, 655
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 239, 570, 747
BstDSI CCRYGG 3 cut(s) 394, 442, 708
BstF5I GGATG 5 cut(s) 73, 704, 728, 779, 856
BstFNI CGCG 3 cut(s) 22, 450, 710
BstKTI GATC 3 cut(s) 42, 304, 622
BstMAI GTCTC 3 cut(s) 482, 743, 783
BstMBI GATC 3 cut(s) 39, 301, 619
BstNI CCWGG 3 cut(s) 333, 546, 771
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 4 cut(s) 35, 331, 544, 769
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 3 cut(s) 22, 450, 710
BstV2I GAAGAC 1 cut(s) 864
BsuRI GGCC 2 cut(s) 441, 803
BtgI CCRYGG 3 cut(s) 394, 442, 708
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 5 cut(s) 73, 704, 728, 779, 856
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 4 cut(s) 96, 198, 358, 607
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 133
Cfr42I CCGCGG 1 cut(s) 711
CseI GACGC 1 cut(s) 456
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 3 cut(s) 147, 212, 656
CviAII CATG 6 cut(s) 184, 275, 395, 485, 659, 758
CviQI GTAC 3 cut(s) 147, 212, 656
DdeI CTNAG 3 cut(s) 239, 570, 747
DpnI GATC 3 cut(s) 41, 303, 621
DpnII GATC 3 cut(s) 39, 301, 619
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 5 cut(s) 362, 412, 519, 819, 864
EarI CTCTTC 5 cut(s) 362, 412, 519, 819, 864
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 783
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 331, 544, 769
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 6 cut(s) 187, 278, 398, 488, 662, 761
FaqI GGGAC 2 cut(s) 257, 590
FatI CATG 6 cut(s) 183, 274, 394, 484, 658, 757
FokI GGATG 5 cut(s) 80, 691, 715, 786, 863
HaeIII GGCC 2 cut(s) 441, 803
HapII CCGG 1 cut(s) 37
HgaI GACGC 1 cut(s) 456
Hin1II CATG 6 cut(s) 187, 278, 398, 488, 662, 761
HinfI GANTC 3 cut(s) 494, 572, 614
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 347, 400
Hpy166II GTNNAC 4 cut(s) 212, 446, 559, 793
Hpy188I TCNGA 7 cut(s) 286, 499, 571, 619, 624, 748, 787
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 4 cut(s) 212, 446, 559, 793
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 3 cut(s) 146, 353, 628
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 8 cut(s) 55, 196, 345, 481, 507, 683, 737, 824
HpyF3I CTNAG 3 cut(s) 239, 570, 747
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 6 cut(s) 187, 278, 398, 488, 662, 761
KspI CCGCGG 1 cut(s) 711
Kzo9I GATC 3 cut(s) 39, 301, 619
LmnI GCTCC 2 cut(s) 173, 372
LweI GCATC 4 cut(s) 205, 277, 369, 490
MabI ACCWGGT 1 cut(s) 331
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 41, 303, 621
MboI GATC 3 cut(s) 39, 301, 619
MboII GAAGA 8 cut(s) 19, 333, 379, 429, 506, 773, 806, 869
MhlI GDGCHC 2 cut(s) 96, 457
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 3 cut(s) 48, 187, 634
MluI ACGCGT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 647
Mox20I TGGCCA 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 347
MscI TGGCCA 1 cut(s) 803
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 2 cut(s) 285, 663
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 3 cut(s) 686, 710, 734
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 4 cut(s) 37, 333, 546, 771
Mva1269I GAATGC 2 cut(s) 347, 652
MvaI CCWGG 3 cut(s) 333, 546, 771
MvnI CGCG 3 cut(s) 22, 450, 710
NciI CCSGG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 394
NdeII GATC 3 cut(s) 39, 301, 619
NlaIII CATG 6 cut(s) 187, 278, 398, 488, 662, 761
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 347
PagI TCATGA 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 454
PctI GAATGC 2 cut(s) 347, 652
PfeI GAWTC 2 cut(s) 494, 614
PflFI GACNNNGTC 2 cut(s) 248, 426
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 133
PshAI GACNNNNGTC 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 3 cut(s) 331, 544, 769
PspGI CCWGG 3 cut(s) 331, 544, 769
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 133
PspPPI RGGWCCY 1 cut(s) 133
PstI CTGCAG 1 cut(s) 685
PsyI GACNNNGTC 2 cut(s) 248, 426
RsaI GTAC 3 cut(s) 148, 213, 657
RsaNI GTAC 3 cut(s) 147, 212, 656
RseI CAYNNNNRTG 2 cut(s) 285, 663
SacII CCGCGG 1 cut(s) 711
SaqAI TTAA 1 cut(s) 534
Sau3AI GATC 3 cut(s) 39, 301, 619
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 4 cut(s) 37, 333, 546, 771
SduI GDGCHC 2 cut(s) 96, 457
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 4 cut(s) 205, 277, 369, 490
SfcI CTRYAG 1 cut(s) 681
Sfr303I CCGCGG 1 cut(s) 711
SgrBI CCGCGG 1 cut(s) 711
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 285, 663
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 3 cut(s) 48, 187, 634
SsiI CCGC 6 cut(s) 450, 554, 686, 708, 710, 732
StyD4I CCNGG 4 cut(s) 35, 331, 544, 769
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 146, 353, 628
TaiI ACGT 1 cut(s) 792
TaqI TCGA 4 cut(s) 15, 304, 430, 457
TasI AATT 3 cut(s) 48, 187, 634
TatI WGTACW 2 cut(s) 211, 655
TauI GCSGC 2 cut(s) 689, 713
TfiI GAWTC 2 cut(s) 494, 614
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 4 cut(s) 96, 198, 358, 607
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 200, 354, 627, 774
TspRI CASTG 4 cut(s) 96, 198, 358, 607
Tth111I GACNNNGTC 2 cut(s) 248, 426
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 2 cut(s) 187, 634
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.