pycom02g23430

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011860
Physical Location & Seq
Forward (+)
21531158 .. 21535556
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23430.6

Sequence Viewer

Length: 969 bp
ATGAGGAAGAAGCTCGATACGCGTTTCCCTGCCGCCCGGATTAAAAAGATTATGCAAGCTGATGAGGATGTTGGGAAGATAGCATTAGCGGTGCCTGTTTTAGTGTCAAAAGCGTTGGAGCTATTTTTGCAAGACCTTTGTGACCGTACCTATGAGATAACCCTCCAAAGAGGAGCTAAAACCATGAACTCACTGCATCTAAAGCATTGTGTACAGAACTATAATGTGTTTGATTTTCTGAGGGACATTGTCAGCAGAGTTCCGGACTATGGTCATGGTCACTCTGATGCTGCTGCTGATGACCGAACCATTTCAAAAAGAAGAAAACCACCAGGTGATGAATGCAATGACAGTGATGAAGAATTGAAGAGGAGCAAGATGCTTGAGATAAACCATGGCAGCAGCAGTGGCAGAGGAAGAGGCCGGGGTCGGGGACGAGGCCGTGGACGTGGTCGGACAGCTGAAAAAGAGATTTCACACCATGAGACTGAATCTGAACCCTGCACATCTCTTCAGCAGACCATTAAACCTAATCCAAACCCTGGAATGGTGGTGGATGATGTTTCTGAGTCGAAGGATGCATTGAAGGAAAATGTCACTGTCCCTGATGAAACTGATCCTGCAGTTCGAAATTTTGATCTGAATACTGATGTAAATGATAGTGAGGACACAAAAGCTGCAGCAACAGCAGCCCAAGCTGCAGCAACGGCAGCCCCAGCAGCATCCCAAGCAGCCCCAGCGGCATCCCAATCAGCTCCAGCGGCATCCCAATCAGCCCCAGTGGCATCCCAAGTTGCCCCAACGGCAGCCCAAGCCTCATCAGCTGGACCTATTGCCGAGCCTAAACATGAAGAATATCCTGGGTGGTCTCCTGCTGATGTGAATAGAATGGCCATTGATCCTCTTCAACTTGCAAATCTGAGCAGAAGGCTAGACGAGGATGAAGAAGATTACGACGAAGAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

323

Amino Acids

34.83

Weight (kDa)

5.23

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccB7I CCANNNNNTGG 1 cut(s) 542
AccII CGCG 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 4 cut(s) 33, 89, 740, 761
AclWI GGATC 2 cut(s) 611, 893
AcoI YGGCCR 1 cut(s) 891
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 148, 213
AfiI CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 4 cut(s) 315, 367, 586, 908
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 331, 541, 859
AluBI AGCT 9 cut(s) 13, 59, 121, 176, 461, 677, 698, 755, 824
AluI AGCT 9 cut(s) 13, 59, 121, 176, 461, 677, 698, 755, 824
Alw26I GTCTC 2 cut(s) 479, 873
AlwI GGATC 2 cut(s) 611, 893
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 3 cut(s) 421, 439, 891
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 827
AsuC2I CCSGG 2 cut(s) 37, 425
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 827
BalI TGGCCA 1 cut(s) 893
BanI GGYRCC 1 cut(s) 91
BceAI ACGGC 3 cut(s) 426, 723, 819
BciT130I CCWGG 3 cut(s) 333, 543, 861
BcnI CCSGG 2 cut(s) 37, 425
BcoDI GTCTC 2 cut(s) 479, 873
BfaI CTAG 1 cut(s) 932
BfmI CTRYAG 3 cut(s) 621, 678, 699
BglI GCCNNNNNGGC 3 cut(s) 740, 782, 803
Bme1390I CCNGG 5 cut(s) 37, 333, 425, 543, 861
Bme18I GGWCC 1 cut(s) 827
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 827
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 5 cut(s) 37, 333, 425, 543, 861
BmrI ACTGGG 1 cut(s) 773
BmsI GCATC 8 cut(s) 205, 277, 369, 568, 731, 752, 773, 794
BmuI ACTGGG 1 cut(s) 773
BoxI GACNNNNGTC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 37, 425
BsaI GGTCTC 1 cut(s) 873
BsaJI CCNNGG 5 cut(s) 394, 424, 442, 541, 860
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
Bse1I ACTGG 1 cut(s) 779
Bse3DI GCAATG 1 cut(s) 352
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 3 cut(s) 333, 543, 861
BseDI CCNNGG 5 cut(s) 394, 424, 442, 541, 860
BseGI GGATG 8 cut(s) 73, 562, 583, 722, 743, 764, 785, 946
BseLI CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 3 cut(s) 230, 558, 911
BseNI ACTGG 1 cut(s) 779
BseRI GAGGAG 2 cut(s) 186, 385
BseYI CCCAGC 2 cut(s) 715, 736
BsgI GTGCAG 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 423, 441, 893
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 3 cut(s) 37, 263, 424
BslFI GGGAC 3 cut(s) 257, 447, 587
BslI CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
BsmAI GTCTC 2 cut(s) 479, 873
BsmFI GGGAC 3 cut(s) 257, 447, 587
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 3 cut(s) 423, 441, 893
Bso31I GGTCTC 1 cut(s) 873
Bsp119I TTCGAA 1 cut(s) 628
Bsp13I TCCGGA 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 616, 637, 898
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 4 cut(s) 33, 89, 740, 761
BspANI GGCC 3 cut(s) 423, 441, 893
BspCNI CTCAG 3 cut(s) 231, 559, 912
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 3 cut(s) 625, 682, 703
BspPI GGATC 2 cut(s) 611, 893
BspT104I TTCGAA 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 873
BsrDI GCAATG 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 779
BssECI CCNNGG 5 cut(s) 394, 424, 442, 541, 860
BssMI GATC 3 cut(s) 616, 637, 898
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 3 cut(s) 333, 543, 861
Bst4CI ACNGT 3 cut(s) 146, 353, 601
Bst6I CTCTTC 5 cut(s) 362, 412, 516, 909, 954
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 239, 567, 920
BstDSI CCRYGG 2 cut(s) 394, 442
BstF5I GGATG 8 cut(s) 73, 562, 583, 722, 743, 764, 785, 946
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 3 cut(s) 619, 640, 901
BstMAI GTCTC 2 cut(s) 479, 873
BstMBI GATC 3 cut(s) 616, 637, 898
BstNI CCWGG 3 cut(s) 333, 543, 861
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 5 cut(s) 35, 331, 423, 541, 859
BstSFI CTRYAG 3 cut(s) 621, 678, 699
BstUI CGCG 1 cut(s) 22
BsuRI GGCC 3 cut(s) 423, 441, 893
BtgI CCRYGG 2 cut(s) 394, 442
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 8 cut(s) 73, 562, 583, 722, 743, 764, 785, 946
BtsI GCAGTG 2 cut(s) 191, 412
BtsIMutI CAGTG 5 cut(s) 191, 358, 412, 597, 786
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 827
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 147, 212
CviAII CATG 5 cut(s) 184, 275, 395, 482, 848
CviQI GTAC 2 cut(s) 147, 212
DdeI CTNAG 3 cut(s) 239, 567, 920
DpnI GATC 3 cut(s) 618, 639, 900
DpnII GATC 3 cut(s) 616, 637, 898
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 5 cut(s) 362, 412, 516, 909, 954
EarI CTCTTC 5 cut(s) 362, 412, 516, 909, 954
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 873
Eco47I GGWCC 1 cut(s) 827
Eco57I CTGAAG 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 331, 541, 859
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 5 cut(s) 187, 278, 398, 485, 851
FaiI YATR 9 cut(s) 53, 153, 185, 222, 270, 276, 396, 483, 849
FaqI GGGAC 3 cut(s) 257, 447, 587
FatI CATG 5 cut(s) 183, 274, 394, 481, 847
FokI GGATG 8 cut(s) 80, 569, 590, 709, 730, 751, 772, 953
FspBI CTAG 1 cut(s) 932
GsaI CCCAGC 2 cut(s) 719, 740
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 3 cut(s) 423, 441, 893
HapII CCGG 3 cut(s) 37, 263, 424
Hin1II CATG 5 cut(s) 187, 278, 398, 485, 851
HinfI GANTC 2 cut(s) 491, 569
HpaII CCGG 3 cut(s) 37, 263, 424
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 212, 446
Hpy188I TCNGA 7 cut(s) 240, 286, 456, 496, 568, 642, 921
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 212, 446
Hpy99I CGWCG 1 cut(s) 959
HpyAV CCTTC 3 cut(s) 568, 580, 921
HpyCH4III ACNGT 3 cut(s) 146, 353, 601
HpyCH4IV ACGT 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 239, 567, 920
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 5 cut(s) 187, 278, 398, 485, 851
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 616, 637, 898
LmnI GCTCC 4 cut(s) 118, 173, 372, 760
LweI GCATC 8 cut(s) 205, 277, 369, 568, 731, 752, 773, 794
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 932
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 3 cut(s) 140, 278, 595
MalI GATC 3 cut(s) 618, 639, 900
MboI GATC 3 cut(s) 616, 637, 898
MlsI TGGCCA 1 cut(s) 893
MluCI AATT 2 cut(s) 362, 631
MluI ACGCGT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 893
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 96, 434
Mox20I TGGCCA 1 cut(s) 893
Mph1103I ATGCAT 1 cut(s) 583
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 893
MseI TTAA 2 cut(s) 42, 525
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 893
MspA1I CMGCKG 4 cut(s) 461, 740, 761, 824
MspI CCGG 3 cut(s) 37, 263, 424
MspR9I CCNGG 5 cut(s) 37, 333, 425, 543, 861
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 3 cut(s) 333, 543, 861
MvnI CGCG 1 cut(s) 22
NciI CCSGG 2 cut(s) 37, 425
NcoI CCATGG 1 cut(s) 394
NdeII GATC 3 cut(s) 616, 637, 898
NlaIII CATG 5 cut(s) 187, 278, 398, 485, 851
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 3 cut(s) 140, 278, 595
NsiI ATGCAT 1 cut(s) 583
NspV TTCGAA 1 cut(s) 628
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 491
PflFI GACNNNGTC 2 cut(s) 248, 450
PflMI CCANNNNNTGG 1 cut(s) 542
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PshAI GACNNNNGTC 1 cut(s) 270
Psp6I CCWGG 3 cut(s) 331, 541, 859
PspFI CCCAGC 2 cut(s) 715, 736
PspGI CCWGG 3 cut(s) 331, 541, 859
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 827
PstI CTGCAG 3 cut(s) 625, 682, 703
PsyI GACNNNGTC 2 cut(s) 248, 450
PvuII CAGCTG 2 cut(s) 461, 824
RsaI GTAC 2 cut(s) 148, 213
RsaNI GTAC 2 cut(s) 147, 212
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 42, 525
Sau3AI GATC 3 cut(s) 616, 637, 898
Sau96I GGNCC 1 cut(s) 827
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 37, 333, 425, 543, 861
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 8 cut(s) 205, 277, 369, 568, 731, 752, 773, 794
SfcI CTRYAG 3 cut(s) 621, 678, 699
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 1 cut(s) 827
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 362, 631
SsiI CCGC 4 cut(s) 33, 89, 740, 761
SspMI CTAG 1 cut(s) 932
StyD4I CCNGG 5 cut(s) 35, 331, 423, 541, 859
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 146, 353, 601
TaiI ACGT 1 cut(s) 451
TaqI TCGA 3 cut(s) 15, 572, 628
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 362, 631
TatI WGTACW 1 cut(s) 211
TauI GCSGC 3 cut(s) 35, 743, 764
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 2 cut(s) 42, 525
Tru9I TTAA 2 cut(s) 42, 525
TscAI CASTG 5 cut(s) 198, 358, 412, 604, 786
TseFI GTSAC 3 cut(s) 140, 278, 595
Tsp45I GTSAC 3 cut(s) 140, 278, 595
TspDTI ATGAA 6 cut(s) 200, 354, 372, 624, 864, 957
TspRI CASTG 5 cut(s) 198, 358, 412, 604, 786
Tth111I GACNNNGTC 2 cut(s) 248, 450
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 827
XapI RAATTY 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 1 cut(s) 932
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.