Rh1CG091000

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011860
Physical Location & Seq
Reverse (-)
19324807 .. 19330370
5564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG091000.1

Sequence Viewer

Length: 852 bp
ATGCAGGCCCGGATCAAAAAAATTATGCAAGCTGATGAGGATGTTGGCAAGATAGCATTAGCAGTGCCCGTTTTAGTTTCAAAAGCATTAGAGTTATTTTTACAGGACCTTTGTGACCGTACATACGAGATAACTCTCCAAAGAGGAGCTAAAACCATGAATTCAGTGCATCTAAAACATTGTGTACAGAGCTACAATGTGTTTGATTTTCTAAGGGACATTGTCAGTAGGGTGCCTGACTATGGTCATGGTCATTCTGATGCTGCTGCTGATGATCGAGCCATCACAAAGAGAAGAAAACCACCAGGTGATGAATGCATTGACAGTGATGAGGAGTTGAAGAGGAGCAAGATGCTTGAGGTGAGCCATGGAAGCAGTAGTGGCAGGGGAAGAGGACGGGGTCGAGGACGAGGCCGTGGACGCGGTGCTCGAACTACTGAAAGAGAGCCTGTGCATCATGAGACTGAATCTGAACCTTGCACATCTCTTCAGCAGAGCAGCAAACTTAATATAAACCCTGGTATGGCGGTGGACGATGTTTCTGAGTCAAAGGAGTTATTGAAGGAAAATGTCAGTGTCCCTGATGAATCTGATCCGACAGTTAGAAATTTTGACTTGAATGCCGATGTACATGAGAATGAGGACACAAAAGCTGCAGCGGCAGCAGCCCAAGCCTCATCCGCGGCAGCAGCCCAAGCCTCATCCACTGCACCTACTTCTGAGACTAAACATGAAGAATACCCAGGATGGTCTCTTTCAGACGTGGACAAAATGGCCATTGACCCTCTTCAACTTGCACAAATGAGCAAAAGGCTGGACGAGGATGAGGAAGACTATGACGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

283

Amino Acids

31.12

Weight (kDa)

5.04

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 3 - 62 7e-17 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccII CGCG 2 cut(s) 423, 683
AciI CCGC 5 cut(s) 423, 527, 659, 681, 683
AclWI GGATC 2 cut(s) 20, 587
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 2 cut(s) 160, 607
AcuI CTGAAG 1 cut(s) 473
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 3 cut(s) 121, 186, 630
AfiI CCNNNNNNNGG 2 cut(s) 242, 523
AgsI TTSAA 5 cut(s) 81, 340, 562, 619, 791
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 3 cut(s) 304, 517, 742
AluBI AGCT 4 cut(s) 32, 149, 192, 653
AluI AGCT 4 cut(s) 32, 149, 192, 653
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 3 cut(s) 455, 716, 756
AlwI GGATC 2 cut(s) 20, 587
AoxI GGCC 3 cut(s) 6, 412, 774
ApeKI GCWGC 9 cut(s) 263, 266, 498, 653, 656, 662, 665, 686, 689
ApoI RAATTY 2 cut(s) 160, 607
AspS9I GGNCC 2 cut(s) 7, 106
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 320, 373
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 776
BanI GGYRCC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 9 cut(s) 250, 253, 510, 640, 668, 674, 677, 698, 701
BccI CCATC 2 cut(s) 290, 741
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 3 cut(s) 306, 519, 744
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 3 cut(s) 455, 716, 756
BfmI CTRYAG 1 cut(s) 654
Bme1390I CCNGG 4 cut(s) 10, 306, 519, 744
Bme18I GGWCC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 2 cut(s) 7, 106
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 4 cut(s) 10, 306, 519, 744
BmsI GCATC 4 cut(s) 178, 250, 342, 463
BoxI GACNNNNGTC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 837
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 5 cut(s) 367, 415, 517, 681, 742
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 523
BseBI CCWGG 3 cut(s) 306, 519, 744
BseDI CCNNGG 5 cut(s) 367, 415, 517, 681, 742
BseGI GGATG 5 cut(s) 46, 677, 701, 752, 829
BseLI CCNNNNNNNGG 2 cut(s) 242, 523
BseMII CTCAG 2 cut(s) 534, 711
BseRI GAGGAG 3 cut(s) 159, 347, 358
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 9 cut(s) 250, 253, 510, 640, 668, 674, 677, 698, 701
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 2 cut(s) 423, 683
BshFI GGCC 3 cut(s) 8, 414, 776
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 2 cut(s) 230, 563
BslI CCNNNNNNNGG 2 cut(s) 242, 523
BsmAI GTCTC 3 cut(s) 455, 716, 756
BsmFI GGGAC 2 cut(s) 230, 563
BsmI GAATGC 2 cut(s) 320, 625
BsnI GGCC 3 cut(s) 8, 414, 776
Bso31I GGTCTC 1 cut(s) 756
Bsp1286I GDGCHC 2 cut(s) 69, 430
Bsp1407I TGTACA 2 cut(s) 184, 628
Bsp143I GATC 3 cut(s) 12, 274, 592
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 5 cut(s) 423, 527, 659, 681, 683
BspANI GGCC 3 cut(s) 8, 414, 776
BspCNI CTCAG 2 cut(s) 535, 712
BspFNI CGCG 2 cut(s) 423, 683
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 2 cut(s) 20, 587
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 756
BsrGI TGTACA 2 cut(s) 184, 628
BssECI CCNNGG 5 cut(s) 367, 415, 517, 681, 742
BssMI GATC 3 cut(s) 12, 274, 592
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 3 cut(s) 306, 519, 744
Bst4CI ACNGT 3 cut(s) 119, 326, 601
Bst6I CTCTTC 5 cut(s) 335, 385, 492, 792, 837
BstAUI TGTACA 2 cut(s) 184, 628
BstC8I GCNNGC 2 cut(s) 6, 30
BstDEI CTNAG 3 cut(s) 212, 543, 720
BstDSI CCRYGG 3 cut(s) 367, 415, 681
BstF5I GGATG 5 cut(s) 46, 677, 701, 752, 829
BstFNI CGCG 2 cut(s) 423, 683
BstKTI GATC 3 cut(s) 15, 277, 595
BstMAI GTCTC 3 cut(s) 455, 716, 756
BstMBI GATC 3 cut(s) 12, 274, 592
BstNI CCWGG 3 cut(s) 306, 519, 744
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 4 cut(s) 8, 304, 517, 742
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 2 cut(s) 423, 683
BstV1I GCAGC 9 cut(s) 250, 253, 510, 640, 668, 674, 677, 698, 701
BstV2I GAAGAC 1 cut(s) 837
BsuRI GGCC 3 cut(s) 8, 414, 776
BtgI CCRYGG 3 cut(s) 367, 415, 681
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 5 cut(s) 46, 677, 701, 752, 829
BtsI GCAGTG 2 cut(s) 69, 705
BtsIMutI CAGTG 5 cut(s) 69, 171, 331, 580, 705
Cac8I GCNNGC 2 cut(s) 6, 30
CciI TCATGA 1 cut(s) 457
Cfr13I GGNCC 2 cut(s) 7, 106
Cfr42I CCGCGG 1 cut(s) 684
CseI GACGC 1 cut(s) 429
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 3 cut(s) 120, 185, 629
CviAII CATG 6 cut(s) 157, 248, 368, 458, 632, 731
CviQI GTAC 3 cut(s) 120, 185, 629
DdeI CTNAG 3 cut(s) 212, 543, 720
DpnI GATC 3 cut(s) 14, 276, 594
DpnII GATC 3 cut(s) 12, 274, 592
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 5 cut(s) 335, 385, 492, 792, 837
EarI CTCTTC 5 cut(s) 335, 385, 492, 792, 837
Eco130I CCWWGG 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 756
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 3 cut(s) 304, 517, 742
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 6 cut(s) 160, 251, 371, 461, 635, 734
FaqI GGGAC 2 cut(s) 230, 563
FatI CATG 6 cut(s) 156, 247, 367, 457, 631, 730
FokI GGATG 5 cut(s) 53, 664, 688, 759, 836
HaeIII GGCC 3 cut(s) 8, 414, 776
HapII CCGG 1 cut(s) 10
HgaI GACGC 1 cut(s) 429
Hin1II CATG 6 cut(s) 160, 251, 371, 461, 635, 734
HinfI GANTC 3 cut(s) 467, 545, 587
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 320, 373
Hpy166II GTNNAC 4 cut(s) 185, 419, 532, 766
Hpy188I TCNGA 7 cut(s) 259, 472, 544, 592, 597, 721, 760
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 4 cut(s) 185, 419, 532, 766
HpyAV CCTTC 1 cut(s) 556
HpyCH4III ACNGT 3 cut(s) 119, 326, 601
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 9 cut(s) 4, 28, 169, 318, 454, 480, 656, 710, 797
HpyF3I CTNAG 3 cut(s) 212, 543, 720
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 6 cut(s) 160, 251, 371, 461, 635, 734
KspI CCGCGG 1 cut(s) 684
Kzo9I GATC 3 cut(s) 12, 274, 592
LmnI GCTCC 2 cut(s) 146, 345
Lsp1109I GCAGC 9 cut(s) 250, 253, 510, 640, 668, 674, 677, 698, 701
LweI GCATC 4 cut(s) 178, 250, 342, 463
MabI ACCWGGT 1 cut(s) 304
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 1 cut(s) 113
MalI GATC 3 cut(s) 14, 276, 594
MboI GATC 3 cut(s) 12, 274, 592
MboII GAAGA 7 cut(s) 306, 352, 402, 479, 746, 779, 842
MhlI GDGCHC 2 cut(s) 69, 430
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 3 cut(s) 21, 160, 607
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 620
Mox20I TGGCCA 1 cut(s) 776
Mph1103I ATGCAT 1 cut(s) 320
MscI TGGCCA 1 cut(s) 776
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 2 cut(s) 258, 636
Msp20I TGGCCA 1 cut(s) 776
MspA1I CMGCKG 2 cut(s) 659, 683
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 4 cut(s) 10, 306, 519, 744
Mva1269I GAATGC 2 cut(s) 320, 625
MvaI CCWGG 3 cut(s) 306, 519, 744
MvnI CGCG 2 cut(s) 423, 683
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 367
NdeII GATC 3 cut(s) 12, 274, 592
NlaIII CATG 6 cut(s) 160, 251, 371, 461, 635, 734
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 320
PagI TCATGA 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 427
PctI GAATGC 2 cut(s) 320, 625
PfeI GAWTC 2 cut(s) 467, 587
PflFI GACNNNGTC 2 cut(s) 221, 399
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PpuMI RGGWCCY 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 3 cut(s) 304, 517, 742
PspGI CCWGG 3 cut(s) 304, 517, 742
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 7, 106
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 1 cut(s) 658
PsyI GACNNNGTC 2 cut(s) 221, 399
RsaI GTAC 3 cut(s) 121, 186, 630
RsaNI GTAC 3 cut(s) 120, 185, 629
RseI CAYNNNNRTG 2 cut(s) 258, 636
SacII CCGCGG 1 cut(s) 684
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 3 cut(s) 12, 274, 592
Sau96I GGNCC 2 cut(s) 7, 106
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 4 cut(s) 10, 306, 519, 744
SduI GDGCHC 2 cut(s) 69, 430
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 4 cut(s) 178, 250, 342, 463
SfcI CTRYAG 1 cut(s) 654
Sfr303I CCGCGG 1 cut(s) 684
SgrBI CCGCGG 1 cut(s) 684
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 258, 636
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 3 cut(s) 21, 160, 607
SsiI CCGC 5 cut(s) 423, 527, 659, 681, 683
StyD4I CCNGG 4 cut(s) 8, 304, 517, 742
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 3 cut(s) 119, 326, 601
TaiI ACGT 1 cut(s) 765
TaqI TCGA 3 cut(s) 277, 403, 430
TasI AATT 3 cut(s) 21, 160, 607
TatI WGTACW 2 cut(s) 184, 628
TauI GCSGC 2 cut(s) 662, 686
TfiI GAWTC 2 cut(s) 467, 587
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 5 cut(s) 69, 171, 331, 580, 712
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 9 cut(s) 263, 266, 498, 653, 656, 662, 665, 686, 689
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 4 cut(s) 173, 327, 600, 747
TspRI CASTG 5 cut(s) 69, 171, 331, 580, 712
Tth111I GACNNNGTC 2 cut(s) 221, 399
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 160, 607
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.