MD02G1273400.v1.1

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011860
Physical Location & Seq
Forward (+)
32804138 .. 32809135
4998 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1273400.v1.1.491

Sequence Viewer

Length: 999 bp
ATGAGGAAGAAGCTGGATACCCGTTTCCCTGCTGCCCGGATTAAAAAGATTATGCAAGCTGATGAGGACGTTGGGAAGATAGCATTAGCGGTGCCTGTTTTAGTGTCTAAAGCGTTGGAGCTATTTTTGCAAGACCTTTGTGACCGTACCTATGAGATAACCCTCCAAAGAGGAGCTAAAACCATGAACTCACTGCATCTAAAGCATTGTGTACAGAGCTATAATGTGTTTGATTTTCTGAGGGACATCGTCAGCAGAGTTCCGGACTATGGTCATGGTCATTCTGATGCTGCTACTGATGACCGAACCATTTCAAAAAGAAGAAAACCACCAGGTGATGAATGCAATGACAGTGATGAAGAATTGAAGAGGAGCAAGATGCTTGAGATAAACCATGGCAGCAGCAGTGGCAGAGGGAGAGGCCGGGGTCGAGGACGAGGCCGTGGACGTGGTCGGACAGCTGAAAGAGAGATTTCACACCATGAGACTGAATCTGAACCCTGCACATCTCTTCAGCAGACCATTATACCTAATCCAAACCCTGGAATGGTGGCGGATGATGTTTCCGAGTCGAAGGATGTATTGAGGGAAAATGTCACTGTCCCTGATGAAACTGATCCAGCAGTTCGAAATTTTGATCTGAATGCTGATGTAAATGATAACGAGGACACAAAAGCTGCAGCAAGAGCAGCCCAAGCTGGAGCAATGGCATCCCAAGCAGCCCCAGTGGCATCCCAAGCGGCCCCAGTGGCATCCCAAGCAGCCCCAATGGCAGCCCAAGCTGGAGCAATGGCATCCCAAGCACCCCCAGAGGCATCCCAAGCAGCCCCAATGGCAGCCCAAGCCTCATCAGCCGGACCTATTTCTGAGCCTAAACATGAAGAATATCCTGGGTGGTCTCTCGCTGATGTGGATAGAATGGCCATTGATCCTCTTCAACTTGCAAATCTGAGCAGAAGGCTAGACGAGGATGAAGAAGATTATGACGAAGAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

333

Amino Acids

36.01

Weight (kDa)

5.11

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2.9e-19 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccB7I CCANNNNNTGG 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 3 cut(s) 89, 554, 740
AclWI GGATC 2 cut(s) 611, 923
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 148, 213
AfiI CCNNNNNNNGG 3 cut(s) 269, 542, 547
AgsI TTSAA 3 cut(s) 315, 367, 938
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 331, 541, 889
AluBI AGCT 9 cut(s) 13, 59, 121, 176, 219, 461, 677, 698, 782
AluI AGCT 9 cut(s) 13, 59, 121, 176, 219, 461, 677, 698, 782
Alw26I GTCTC 2 cut(s) 479, 903
AlwI GGATC 2 cut(s) 611, 923
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 4 cut(s) 421, 439, 741, 921
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 742, 857
AsuC2I CCSGG 2 cut(s) 37, 425
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 857
BalI TGGCCA 1 cut(s) 923
BanI GGYRCC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 3 cut(s) 333, 543, 891
BciVI GTATCC 1 cut(s) 10
BcnI CCSGG 2 cut(s) 37, 425
BcoDI GTCTC 2 cut(s) 479, 903
BfaI CTAG 1 cut(s) 962
BfmI CTRYAG 1 cut(s) 678
BfuI GTATCC 1 cut(s) 10
BglI GCCNNNNNGGC 4 cut(s) 728, 749, 770, 833
Bme1390I CCNGG 5 cut(s) 37, 333, 425, 543, 891
Bme18I GGWCC 1 cut(s) 857
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 742, 857
BmiI GGNNCC 2 cut(s) 93, 744
BmrFI CCNGG 5 cut(s) 37, 333, 425, 543, 891
BmrI ACTGGG 2 cut(s) 719, 740
BmsI GCATC 8 cut(s) 205, 277, 369, 719, 740, 761, 803, 824
BmuI ACTGGG 2 cut(s) 719, 740
BoxI GACNNNNGTC 1 cut(s) 270
BpmI CTGGAG 2 cut(s) 720, 804
Bpu14I TTCGAA 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 37, 425
BsaI GGTCTC 1 cut(s) 903
BsaJI CCNNGG 5 cut(s) 394, 424, 442, 541, 890
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 542, 547
Bse1I ACTGG 2 cut(s) 725, 746
Bse3DI GCAATG 3 cut(s) 352, 711, 795
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 3 cut(s) 333, 543, 891
BseDI CCNNGG 5 cut(s) 394, 424, 442, 541, 890
BseGI GGATG 8 cut(s) 562, 583, 710, 731, 752, 794, 815, 976
BseLI CCNNNNNNNGG 3 cut(s) 269, 542, 547
BseMI GCAATG 3 cut(s) 352, 711, 795
BseMII CTCAG 3 cut(s) 230, 858, 941
BseNI ACTGG 2 cut(s) 725, 746
BseRI GAGGAG 2 cut(s) 186, 385
BsgI GTGCAG 1 cut(s) 487
BshFI GGCC 4 cut(s) 423, 441, 743, 923
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 4 cut(s) 37, 263, 424, 855
BslFI GGGAC 2 cut(s) 257, 587
BslI CCNNNNNNNGG 3 cut(s) 269, 542, 547
BsmAI GTCTC 2 cut(s) 479, 903
BsmFI GGGAC 2 cut(s) 257, 587
BsmI GAATGC 2 cut(s) 347, 649
BsnI GGCC 4 cut(s) 423, 441, 743, 923
Bso31I GGTCTC 1 cut(s) 903
Bsp119I TTCGAA 1 cut(s) 628
Bsp13I TCCGGA 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 616, 637, 928
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 3 cut(s) 89, 554, 740
BspANI GGCC 4 cut(s) 423, 441, 743, 923
BspCNI CTCAG 3 cut(s) 231, 859, 942
BspEI TCCGGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 93, 744
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 2 cut(s) 611, 923
BspT104I TTCGAA 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 903
BsrDI GCAATG 3 cut(s) 352, 711, 795
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 2 cut(s) 725, 746
BssECI CCNNGG 5 cut(s) 394, 424, 442, 541, 890
BssMI GATC 3 cut(s) 616, 637, 928
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 3 cut(s) 333, 543, 891
Bst4CI ACNGT 3 cut(s) 146, 353, 601
Bst6I CTCTTC 4 cut(s) 362, 516, 939, 984
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 239, 867, 950
BstDSI CCRYGG 2 cut(s) 394, 442
BstF5I GGATG 8 cut(s) 562, 583, 710, 731, 752, 794, 815, 976
BstKTI GATC 3 cut(s) 619, 640, 931
BstMAI GTCTC 2 cut(s) 479, 903
BstMBI GATC 3 cut(s) 616, 637, 928
BstNI CCWGG 3 cut(s) 333, 543, 891
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 5 cut(s) 35, 331, 423, 541, 889
BstSFI CTRYAG 1 cut(s) 678
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 4 cut(s) 423, 441, 743, 923
BtgI CCRYGG 2 cut(s) 394, 442
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 8 cut(s) 562, 583, 710, 731, 752, 794, 815, 976
BtsI GCAGTG 2 cut(s) 191, 412
BtsIMutI CAGTG 6 cut(s) 191, 358, 412, 597, 732, 753
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 742, 857
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 147, 212
CviAII CATG 5 cut(s) 184, 275, 395, 482, 878
CviQI GTAC 2 cut(s) 147, 212
DdeI CTNAG 3 cut(s) 239, 867, 950
DpnI GATC 3 cut(s) 618, 639, 930
DpnII GATC 3 cut(s) 616, 637, 928
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 4 cut(s) 362, 516, 939, 984
EarI CTCTTC 4 cut(s) 362, 516, 939, 984
EciI GGCGGA 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 857
Eco57I CTGAAG 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 331, 541, 889
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 5 cut(s) 187, 278, 398, 485, 881
FaqI GGGAC 2 cut(s) 257, 587
FatI CATG 5 cut(s) 183, 274, 394, 481, 877
FokI GGATG 8 cut(s) 569, 590, 697, 718, 739, 781, 802, 983
FspBI CTAG 1 cut(s) 962
GsuI CTGGAG 2 cut(s) 720, 804
HaeIII GGCC 4 cut(s) 423, 441, 743, 923
HapII CCGG 4 cut(s) 37, 263, 424, 855
Hin1II CATG 5 cut(s) 187, 278, 398, 485, 881
HinfI GANTC 2 cut(s) 491, 569
HpaII CCGG 4 cut(s) 37, 263, 424, 855
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 212, 446
Hpy188I TCNGA 8 cut(s) 240, 286, 456, 496, 568, 642, 868, 951
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 212, 446
HpyAV CCTTC 2 cut(s) 568, 951
HpyCH4III ACNGT 3 cut(s) 146, 353, 601
HpyCH4IV ACGT 2 cut(s) 69, 448
HpyCH4V TGCA 7 cut(s) 55, 130, 196, 345, 504, 680, 944
HpyF3I CTNAG 3 cut(s) 239, 867, 950
HpySE526I ACGT 2 cut(s) 69, 448
Hsp92II CATG 5 cut(s) 187, 278, 398, 485, 881
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 616, 637, 928
LmnI GCTCC 5 cut(s) 118, 173, 372, 701, 785
LweI GCATC 8 cut(s) 205, 277, 369, 719, 740, 761, 803, 824
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 962
MaeII ACGT 2 cut(s) 69, 448
MaeIII GTNAC 2 cut(s) 140, 595
MalI GATC 3 cut(s) 618, 639, 930
MboI GATC 3 cut(s) 616, 637, 928
MlsI TGGCCA 1 cut(s) 923
MluCI AATT 2 cut(s) 362, 631
MluNI TGGCCA 1 cut(s) 923
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 96, 434
Mox20I TGGCCA 1 cut(s) 923
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 923
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 923
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 4 cut(s) 37, 263, 424, 855
MspR9I CCNGG 5 cut(s) 37, 333, 425, 543, 891
Mva1269I GAATGC 2 cut(s) 347, 649
MvaI CCWGG 3 cut(s) 333, 543, 891
NciI CCSGG 2 cut(s) 37, 425
NcoI CCATGG 1 cut(s) 394
NdeII GATC 3 cut(s) 616, 637, 928
NlaIII CATG 5 cut(s) 187, 278, 398, 485, 881
NlaIV GGNNCC 2 cut(s) 93, 744
NmuCI GTSAC 2 cut(s) 140, 595
NspV TTCGAA 1 cut(s) 628
PctI GAATGC 2 cut(s) 347, 649
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 491
PflFI GACNNNGTC 2 cut(s) 248, 450
PflMI CCANNNNNTGG 1 cut(s) 542
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PshAI GACNNNNGTC 1 cut(s) 270
Psp6I CCWGG 3 cut(s) 331, 541, 889
PspGI CCWGG 3 cut(s) 331, 541, 889
PspN4I GGNNCC 2 cut(s) 93, 744
PspPI GGNCC 2 cut(s) 742, 857
PstI CTGCAG 1 cut(s) 682
PsyI GACNNNGTC 2 cut(s) 248, 450
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 2 cut(s) 148, 213
RsaNI GTAC 2 cut(s) 147, 212
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 3 cut(s) 616, 637, 928
Sau96I GGNCC 2 cut(s) 742, 857
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 37, 333, 425, 543, 891
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 8 cut(s) 205, 277, 369, 719, 740, 761, 803, 824
SfcI CTRYAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 1 cut(s) 857
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 362, 631
SsiI CCGC 3 cut(s) 89, 554, 740
SspMI CTAG 1 cut(s) 962
StyD4I CCNGG 5 cut(s) 35, 331, 423, 541, 889
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 146, 353, 601
TaiI ACGT 2 cut(s) 72, 451
TaqI TCGA 3 cut(s) 430, 572, 628
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 362, 631
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 6 cut(s) 198, 358, 412, 604, 732, 753
TseFI GTSAC 2 cut(s) 140, 595
Tsp45I GTSAC 2 cut(s) 140, 595
TspDTI ATGAA 6 cut(s) 200, 354, 372, 624, 894, 987
TspRI CASTG 6 cut(s) 198, 358, 412, 604, 732, 753
Tth111I GACNNNGTC 2 cut(s) 248, 450
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 857
XapI RAATTY 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.