Prupe.2G047600_v2.0.a1

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011860
Physical Location & Seq
Reverse (-)
5480958 .. 5487065
6108 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G047600.1

Sequence Viewer

Length: 954 bp
ATGAGGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGTATTAAAAAGATTATGCAAGCTGATGAGGATGTTGGGAAGATAGCATTAGCAGTGCCTGTTTTAGTTTCTAAAGCATTGGAGTTATTTTTGCAAGACCTTTGTGACCGTACCTATGAGATAACCCTCCAAAGAGGAGCTAAAACCATGAATGCAGTGCATCTAAAGCATTGTGTACAGAGCTATAATGTGTTTGATTTTCTGAGGGACATCGTCAGCAGGGTTCCTGACTATGGCCATGGTCATTCTGATGCAGCTGGCGAGGATCGAGCCATTTCAAAACGAAGGAAACCACCAGGTGATGAATGCATCGACAGTGATGAAGAGTTGAAGAGGAGCAAGATGCTTGAGGTTAACCATGGCAGCAGCAGCGGCAGAGGAAGAGGTCGGGGTCGAGGACGAGGCCGTGGACGTGGGCGGGCCAGTGAAAGAGAGACCCTGCACCATGAGACTGAATCTGAACCCTGCACATCTCTTCAGCACGCCACCAAACCTAATCCAAATCCTGGAATGGTGGTGGATGACGCTTCCGAGTCAAAGGAGGAAATGAAGGAAAATGCTGTTATCCCTGATGAGTCTGATCCTGCAGTTCGAAATTTTGATCTGAATGCCGATGTAATTGAGAATGAGGATACAAAAGCTGCAGCGACAGCAGCCCAAGCAGCGACAGCTGCCCAAGCTTCATCGACAGCTACCCAAGCTGCAGCAACAGCATCCCAAGCTGCAGCAACAGCATCCCAAGCTGCAGCAACAGCAGCCCCGACCTCGTCTGCTGGACCTACTTCTGAGATTAAACATGAAGAATATCCTGGGTGGTCTCTCTCTGATGTGGATAAAATGGCCATTGACCCTCTTCAACTTGCACATTTGAGCGGAAGGATAGACGAGGATGAGGAAGACTATGACGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

318

Amino Acids

34.26

Weight (kDa)

5.17

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 542
AccBSI CCGCTC 1 cut(s) 909
AciI CCGC 3 cut(s) 408, 454, 909
AclWI GGATC 2 cut(s) 309, 611
AcoI YGGCCR 2 cut(s) 271, 876
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 148, 213
AfiI CCNNNNNNNGG 2 cut(s) 269, 542
AgsI TTSAA 3 cut(s) 315, 367, 893
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 331, 541, 844
Alw26I GTCTC 3 cut(s) 464, 479, 858
AlwI GGATC 2 cut(s) 309, 611
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 4 cut(s) 271, 439, 456, 876
ApoI RAATTY 1 cut(s) 631
AspS9I GGNCC 2 cut(s) 456, 812
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 812
BalI TGGCCA 2 cut(s) 273, 878
BbsI GAAGAC 1 cut(s) 939
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 3 cut(s) 333, 543, 846
BciVI GTATCC 1 cut(s) 661
BcoDI GTCTC 3 cut(s) 464, 479, 858
BfmI CTRYAG 5 cut(s) 621, 678, 738, 759, 780
BfuI GTATCC 1 cut(s) 661
Bme1390I CCNGG 3 cut(s) 333, 543, 846
Bme18I GGWCC 1 cut(s) 812
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 456, 812
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 3 cut(s) 333, 543, 846
BmsI GCATC 6 cut(s) 205, 277, 354, 369, 758, 779
BpiI GAAGAC 1 cut(s) 939
Bpu14I TTCGAA 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 404
BsaI GGTCTC 2 cut(s) 464, 858
BsaJI CCNNGG 4 cut(s) 274, 394, 442, 845
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 542
Bse1I ACTGG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 333, 543, 846
BseDI CCNNGG 4 cut(s) 274, 394, 442, 845
BseGI GGATG 5 cut(s) 73, 562, 749, 770, 931
BseLI CCNNNNNNNGG 2 cut(s) 269, 542
BseMII CTCAG 2 cut(s) 230, 813
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 186, 385
BsgI GTGCAG 2 cut(s) 461, 487
BshFI GGCC 4 cut(s) 273, 441, 458, 878
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 269, 542
BsmAI GTCTC 3 cut(s) 464, 479, 858
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 3 cut(s) 193, 347, 649
BsnI GGCC 4 cut(s) 273, 441, 458, 878
Bso31I GGTCTC 2 cut(s) 464, 858
Bsp119I TTCGAA 1 cut(s) 628
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 301, 616, 637
Bsp19I CCATGG 2 cut(s) 274, 394
BspACI CCGC 3 cut(s) 408, 454, 909
BspANI GGCC 4 cut(s) 273, 441, 458, 878
BspCNI CTCAG 2 cut(s) 231, 814
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 5 cut(s) 625, 682, 742, 763, 784
BspPI GGATC 2 cut(s) 309, 611
BspT104I TTCGAA 1 cut(s) 628
BspTNI GGTCTC 2 cut(s) 464, 858
BsrBI CCGCTC 1 cut(s) 909
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 4 cut(s) 274, 394, 442, 845
BssMI GATC 3 cut(s) 301, 616, 637
BssT1I CCWWGG 2 cut(s) 274, 394
Bst2UI CCWGG 3 cut(s) 333, 543, 846
Bst4CI ACNGT 2 cut(s) 146, 353
Bst6I CTCTTC 6 cut(s) 354, 362, 412, 516, 894, 939
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 4 cut(s) 57, 295, 456, 519
BstDEI CTNAG 2 cut(s) 239, 822
BstDSI CCRYGG 3 cut(s) 274, 394, 442
BstF5I GGATG 5 cut(s) 73, 562, 749, 770, 931
BstKTI GATC 3 cut(s) 304, 619, 640
BstMAI GTCTC 3 cut(s) 464, 479, 858
BstMBI GATC 3 cut(s) 301, 616, 637
BstNI CCWGG 3 cut(s) 333, 543, 846
BstSCI CCNGG 3 cut(s) 331, 541, 844
BstSFI CTRYAG 5 cut(s) 621, 678, 738, 759, 780
BstV2I GAAGAC 1 cut(s) 939
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 4 cut(s) 273, 441, 458, 878
BtgI CCRYGG 3 cut(s) 274, 394, 442
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 5 cut(s) 73, 562, 749, 770, 931
BtsI GCAGTG 2 cut(s) 96, 198
BtsIMutI CAGTG 4 cut(s) 96, 198, 358, 466
Cac8I GCNNGC 4 cut(s) 57, 295, 456, 519
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 456, 812
CseI GACGC 1 cut(s) 569
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 147, 212
CviAII CATG 5 cut(s) 184, 275, 395, 482, 833
CviQI GTAC 2 cut(s) 147, 212
DdeI CTNAG 2 cut(s) 239, 822
DpnI GATC 3 cut(s) 303, 618, 639
DpnII GATC 3 cut(s) 301, 616, 637
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 271, 876
Eam1104I CTCTTC 6 cut(s) 354, 362, 412, 516, 894, 939
EarI CTCTTC 6 cut(s) 354, 362, 412, 516, 894, 939
Eco130I CCWWGG 2 cut(s) 274, 394
Eco31I GGTCTC 2 cut(s) 464, 858
Eco47I GGWCC 1 cut(s) 812
Eco57I CTGAAG 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 331, 541, 844
EcoT14I CCWWGG 2 cut(s) 274, 394
EcoT22I ATGCAT 1 cut(s) 347
ErhI CCWWGG 2 cut(s) 274, 394
FaeI CATG 5 cut(s) 187, 278, 398, 485, 836
FaqI GGGAC 1 cut(s) 257
FatI CATG 5 cut(s) 183, 274, 394, 481, 832
FauI CCCGC 1 cut(s) 447
FokI GGATG 5 cut(s) 80, 569, 736, 757, 938
HaeIII GGCC 4 cut(s) 273, 441, 458, 878
HgaI GACGC 1 cut(s) 569
Hin1II CATG 5 cut(s) 187, 278, 398, 485, 836
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 3 cut(s) 491, 569, 611
HpaI GTTAAC 1 cut(s) 391
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 212, 391, 446
Hpy188I TCNGA 8 cut(s) 240, 286, 496, 568, 616, 642, 823, 862
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 3 cut(s) 212, 391, 446
HpyAV CCTTC 3 cut(s) 315, 580, 906
HpyCH4III ACNGT 2 cut(s) 146, 353
HpyCH4IV ACGT 1 cut(s) 448
HpyF3I CTNAG 2 cut(s) 239, 822
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 5 cut(s) 187, 278, 398, 485, 836
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 301, 616, 637
LmnI GCTCC 2 cut(s) 173, 372
LweI GCATC 6 cut(s) 205, 277, 354, 369, 758, 779
MabI ACCWGGT 1 cut(s) 331
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 303, 618, 639
MbiI CCGCTC 1 cut(s) 909
MboI GATC 3 cut(s) 301, 616, 637
MboII GAAGA 9 cut(s) 19, 88, 371, 379, 429, 503, 848, 881, 944
MlsI TGGCCA 2 cut(s) 273, 878
MluCI AATT 2 cut(s) 631, 654
MluNI TGGCCA 2 cut(s) 273, 878
MlyI GAGTC 2 cut(s) 578, 620
Mox20I TGGCCA 2 cut(s) 273, 878
Mph1103I ATGCAT 1 cut(s) 347
MscI TGGCCA 2 cut(s) 273, 878
MseI TTAA 3 cut(s) 42, 390, 828
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 2 cut(s) 273, 878
MspA1I CMGCKG 3 cut(s) 293, 408, 707
MspR9I CCNGG 3 cut(s) 333, 543, 846
Mva1269I GAATGC 3 cut(s) 193, 347, 649
MvaI CCWGG 3 cut(s) 333, 543, 846
NcoI CCATGG 2 cut(s) 274, 394
NdeII GATC 3 cut(s) 301, 616, 637
NlaIII CATG 5 cut(s) 187, 278, 398, 485, 836
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 347
NspV TTCGAA 1 cut(s) 628
PctI GAATGC 3 cut(s) 193, 347, 649
PfeI GAWTC 1 cut(s) 491
PflFI GACNNNGTC 2 cut(s) 248, 802
PflMI CCANNNNNTGG 1 cut(s) 542
PfoI TCCNGGA 1 cut(s) 541
PleI GAGTC 2 cut(s) 577, 619
PpsI GAGTC 2 cut(s) 577, 619
Psp6I CCWGG 3 cut(s) 331, 541, 844
PspGI CCWGG 3 cut(s) 331, 541, 844
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 456, 812
PstI CTGCAG 5 cut(s) 625, 682, 742, 763, 784
PstNI CAGNNNCTG 1 cut(s) 95
PsyI GACNNNGTC 2 cut(s) 248, 802
PvuII CAGCTG 2 cut(s) 293, 707
RsaI GTAC 2 cut(s) 148, 213
RsaNI GTAC 2 cut(s) 147, 212
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 3 cut(s) 42, 390, 828
Sau3AI GATC 3 cut(s) 301, 616, 637
Sau96I GGNCC 2 cut(s) 456, 812
SchI GAGTC 2 cut(s) 578, 620
ScrFI CCNGG 3 cut(s) 333, 543, 846
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 6 cut(s) 205, 277, 354, 369, 758, 779
SfcI CTRYAG 5 cut(s) 621, 678, 738, 759, 780
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 631, 654
SsiI CCGC 3 cut(s) 408, 454, 909
StyD4I CCNGG 3 cut(s) 331, 541, 844
StyI CCWWGG 2 cut(s) 274, 394
TaaI ACNGT 2 cut(s) 146, 353
TaiI ACGT 1 cut(s) 451
TaqI TCGA 6 cut(s) 15, 304, 348, 430, 628, 722
TasI AATT 2 cut(s) 631, 654
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 3 cut(s) 42, 390, 828
Tru9I TTAA 3 cut(s) 42, 390, 828
TscAI CASTG 4 cut(s) 96, 198, 358, 466
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 6 cut(s) 200, 354, 372, 599, 708, 849
TspRI CASTG 4 cut(s) 96, 198, 358, 466
Tth111I GACNNNGTC 2 cut(s) 248, 802
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 812
XapI RAATTY 1 cut(s) 631
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.