MD07G1042300.v1.1

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011860
Physical Location & Seq
Forward (+)
3543314 .. 3555874
12561 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1042300.v1.1.491

Sequence Viewer

Length: 978 bp
ATGAGGAAGAAGCTCGATACCCGTTTTCCTGCTGCCCGGATTAAAAAGATTATGCAAGCTGATGAAGATGTTGGGAAGATAGCATTAGCAGTGCCTGTTTTAGTGTCTAAAGCGTTGGAGCTATTCTTGCAAGACCTTTGTGACCGTACCTATGAGATAACCCTCCAAAGAGGAGCCAAAACCATGAATGCAGTGCATCTAAAGCACTGTGTACAGAGCTATAATGTGTTTGATTTTCTGAGGGACATCGTCAGCAGAGTTCCTGACTATACTCATGGTCATTCTGATGCTGCTGCCGATGACCGAGCCCTTTCAAAAAGAAGAAAACCACCAGGTGATGAAGGCATTGACAGTGATGAAGAATTGAAGAGGAGCAAGATGCTTGAGATAAAAAATAGCAGCAGCAGCGGCAGAGGAAGAGGCCGAGGACGGGGTCGAGGCCGTGGACGTGGTCGGACCACTGAAAGAGACACTTCGCACCATGAGACTGAATCTGATCCGTGCACATCTCTTCGGCAGATCACTGAACCTAATCCAAACCCTGGAATGGTGGTGGATGATGTTTCCGAGTCAAAGGATATATTGAAAGAAAATGCCATTGCACCTGATGAATCCGATCCAGCAGTTAGAAACTTTGATCTGAATGCCGAAGTTAATGATGCTGAGGACATAAAAGCTGCCGCAACAGCAGCCCAAGCCGCCGCAACAGCAGCCCAAGCTTCCGCAACAGTAGCCCAAGCTGCGGCAACTGCATCCCAAGCTGCCCCAACAGCATCCCAAGCTGCCCCAACGGCATCCCAAGCTGCCCCAACGGCAGCTCAAGCCTCATCAGCTGGACCTATCTCCGAGCCTAAACATGAAGAATATCCTGGGTGGTCTCTCTCTGATGTGGATGGAATGGCCATTGATCCTGTTCAACTTGCAAATCTCAGCAGAAGGCTAGACGAGGATGAGGAAGATTATGACGAAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

326

Amino Acids

34.99

Weight (kDa)

5.05

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2.8e-19 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 542
AciI CCGC 6 cut(s) 408, 681, 699, 702, 723, 743
AclWI GGATC 3 cut(s) 491, 611, 902
AcoI YGGCCR 1 cut(s) 900
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 148, 213
AfiI CCNNNNNNNGG 4 cut(s) 430, 542, 547, 742
AgsI TTSAA 4 cut(s) 315, 367, 586, 917
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 331, 541, 868
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 3 cut(s) 462, 479, 882
Alw44I GTGCAC 1 cut(s) 502
AlwI GGATC 3 cut(s) 491, 611, 902
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 3 cut(s) 421, 439, 900
ApaLI GTGCAC 1 cut(s) 502
AspS9I GGNCC 2 cut(s) 456, 836
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 2 cut(s) 456, 836
BaeGI GKGCMC 1 cut(s) 506
BalI TGGCCA 1 cut(s) 902
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 506
BbvCI CCTCAGC 1 cut(s) 663
BccI CCATC 1 cut(s) 887
BceAI ACGGC 3 cut(s) 426, 807, 828
BciT130I CCWGG 3 cut(s) 333, 543, 870
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 462, 479, 882
BfaI CTAG 1 cut(s) 941
BglI GCCNNNNNGGC 2 cut(s) 791, 812
Bme1390I CCNGG 4 cut(s) 37, 333, 543, 870
Bme18I GGWCC 2 cut(s) 456, 836
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 456, 836
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 4 cut(s) 37, 333, 543, 870
BmsI GCATC 7 cut(s) 205, 277, 369, 649, 761, 782, 803
Bpu10I CCTNAGC 1 cut(s) 663
BpuEI CTTGAG 2 cut(s) 404, 804
BpuMI CCSGG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 4 cut(s) 424, 442, 541, 869
Bsc4I CCNNNNNNNGG 4 cut(s) 430, 542, 547, 742
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 3 cut(s) 333, 543, 870
BseDI CCNNGG 4 cut(s) 424, 442, 541, 869
BseGI GGATG 6 cut(s) 562, 752, 773, 794, 898, 955
BseLI CCNNNNNNNGG 4 cut(s) 430, 542, 547, 742
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 3 cut(s) 230, 654, 943
BseRI GAGGAG 2 cut(s) 186, 385
BseSI GKGCMC 1 cut(s) 506
BshFI GGCC 3 cut(s) 423, 441, 902
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 4 cut(s) 430, 542, 547, 742
BsmAI GTCTC 3 cut(s) 462, 479, 882
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 2 cut(s) 193, 649
BsnI GGCC 3 cut(s) 423, 441, 902
Bso31I GGTCTC 1 cut(s) 882
Bsp1286I GDGCHC 2 cut(s) 310, 506
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 5 cut(s) 496, 519, 616, 637, 907
BspACI CCGC 6 cut(s) 408, 681, 699, 702, 723, 743
BspANI GGCC 3 cut(s) 423, 441, 902
BspCNI CTCAG 3 cut(s) 231, 655, 942
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 3 cut(s) 491, 611, 902
BspTNI GGTCTC 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 597
BsrGI TGTACA 1 cut(s) 211
BssECI CCNNGG 4 cut(s) 424, 442, 541, 869
BssMI GATC 5 cut(s) 496, 519, 616, 637, 907
Bst2UI CCWGG 3 cut(s) 333, 543, 870
Bst4CI ACNGT 4 cut(s) 146, 209, 353, 730
Bst6I CTCTTC 4 cut(s) 362, 412, 516, 963
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 239, 663, 929
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 6 cut(s) 562, 752, 773, 794, 898, 955
BstKTI GATC 5 cut(s) 499, 522, 619, 640, 910
BstMAI GTCTC 3 cut(s) 462, 479, 882
BstMBI GATC 5 cut(s) 496, 519, 616, 637, 907
BstNI CCWGG 3 cut(s) 333, 543, 870
BstSCI CCNGG 4 cut(s) 35, 331, 541, 868
BstSLI GKGCMC 1 cut(s) 506
BsuRI GGCC 3 cut(s) 423, 441, 902
BtgI CCRYGG 1 cut(s) 442
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 6 cut(s) 562, 752, 773, 794, 898, 955
BtsI GCAGTG 2 cut(s) 96, 198
BtsIMutI CAGTG 6 cut(s) 96, 198, 205, 358, 459, 522
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 456, 836
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 147, 212
CviAII CATG 4 cut(s) 184, 275, 482, 857
CviQI GTAC 2 cut(s) 147, 212
DdeI CTNAG 3 cut(s) 239, 663, 929
DpnI GATC 5 cut(s) 498, 521, 618, 639, 909
DpnII GATC 5 cut(s) 496, 519, 616, 637, 907
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 900
Eam1104I CTCTTC 4 cut(s) 362, 412, 516, 963
EarI CTCTTC 4 cut(s) 362, 412, 516, 963
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 882
Eco47I GGWCC 2 cut(s) 456, 836
EcoRII CCWGG 3 cut(s) 331, 541, 868
EcoT38I GRGCYC 1 cut(s) 310
FaeI CATG 4 cut(s) 187, 278, 485, 860
FalI AAGNNNNNCTT 2 cut(s) 457, 489
FaqI GGGAC 1 cut(s) 257
FatI CATG 4 cut(s) 183, 274, 481, 856
FokI GGATG 6 cut(s) 569, 739, 760, 781, 905, 962
FriOI GRGCYC 1 cut(s) 310
FspBI CTAG 1 cut(s) 941
HaeIII GGCC 3 cut(s) 423, 441, 902
HapII CCGG 1 cut(s) 37
Hin1II CATG 4 cut(s) 187, 278, 485, 860
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 3 cut(s) 491, 569, 611
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 212, 446, 504
Hpy188I TCNGA 9 cut(s) 240, 286, 456, 496, 568, 616, 642, 847, 886
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 3 cut(s) 212, 446, 504
HpyAV CCTTC 2 cut(s) 335, 930
HpyCH4III ACNGT 4 cut(s) 146, 209, 353, 730
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 8 cut(s) 55, 130, 191, 196, 504, 602, 752, 923
HpyF3I CTNAG 3 cut(s) 239, 663, 929
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 4 cut(s) 187, 278, 485, 860
Kzo9I GATC 5 cut(s) 496, 519, 616, 637, 907
LmnI GCTCC 3 cut(s) 118, 173, 372
LweI GCATC 7 cut(s) 205, 277, 369, 649, 761, 782, 803
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 941
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 140
MalI GATC 5 cut(s) 498, 521, 618, 639, 909
MboI GATC 5 cut(s) 496, 519, 616, 637, 907
MhlI GDGCHC 2 cut(s) 310, 506
MlsI TGGCCA 1 cut(s) 902
MluCI AATT 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 902
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 96, 434
Mox20I TGGCCA 1 cut(s) 902
MscI TGGCCA 1 cut(s) 902
MseI TTAA 2 cut(s) 42, 654
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 408, 833
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 4 cut(s) 37, 333, 543, 870
Mva1269I GAATGC 2 cut(s) 193, 649
MvaI CCWGG 3 cut(s) 333, 543, 870
NciI CCSGG 1 cut(s) 37
NdeII GATC 5 cut(s) 496, 519, 616, 637, 907
NlaIII CATG 4 cut(s) 187, 278, 485, 860
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 449
NmuCI GTSAC 1 cut(s) 140
PctI GAATGC 2 cut(s) 193, 649
PfeI GAWTC 2 cut(s) 491, 611
PflFI GACNNNGTC 3 cut(s) 248, 432, 450
PflMI CCANNNNNTGG 1 cut(s) 542
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 331, 541, 868
PspGI CCWGG 3 cut(s) 331, 541, 868
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 456, 836
PstNI CAGNNNCTG 1 cut(s) 95
PsyI GACNNNGTC 3 cut(s) 248, 432, 450
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 2 cut(s) 148, 213
RsaNI GTAC 2 cut(s) 147, 212
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 42, 654
Sau3AI GATC 5 cut(s) 496, 519, 616, 637, 907
Sau96I GGNCC 2 cut(s) 456, 836
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 4 cut(s) 37, 333, 543, 870
SduI GDGCHC 2 cut(s) 310, 506
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 7 cut(s) 205, 277, 369, 649, 761, 782, 803
SinI GGWCC 2 cut(s) 456, 836
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 383, 819
SmoI CTYRAG 2 cut(s) 383, 819
Sse9I AATT 1 cut(s) 362
SsiI CCGC 6 cut(s) 408, 681, 699, 702, 723, 743
SspMI CTAG 1 cut(s) 941
StyD4I CCNGG 4 cut(s) 35, 331, 541, 868
TaaI ACNGT 4 cut(s) 146, 209, 353, 730
TaiI ACGT 1 cut(s) 451
TaqI TCGA 2 cut(s) 15, 436
TaqII GACCGA 1 cut(s) 318
TasI AATT 1 cut(s) 362
TatI WGTACW 1 cut(s) 211
TauI GCSGC 5 cut(s) 411, 683, 701, 704, 746
TfiI GAWTC 2 cut(s) 491, 611
Tru1I TTAA 2 cut(s) 42, 654
Tru9I TTAA 2 cut(s) 42, 654
TscAI CASTG 6 cut(s) 96, 198, 212, 358, 466, 529
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 6 cut(s) 78, 200, 354, 372, 624, 873
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 6 cut(s) 96, 198, 212, 358, 466, 529
Tth111I GACNNNGTC 3 cut(s) 248, 432, 450
Van91I CCANNNNNTGG 1 cut(s) 542
VneI GTGCAC 1 cut(s) 502
VpaK11BI GGWCC 2 cut(s) 456, 836
XspI CTAG 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.