FvH4_7g05500

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009366
Physical Location & Seq
Reverse (-)
5793914 .. 5796122
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05500.t1

Sequence Viewer

Length: 867 bp
ATGTACAGATCAGCAGCAAAGTGGCTTCTCCATTCCCTTGGTGCACCCTTAAGTAACAGTAGCAGCAACCGTATTATTCGGCTTTGCCCTCTTCAGTCCCTCATCAGCCGTTCTCGCTTCTCCACCACTGTCAACTCTGAACCCTTTGTCAGTCAAGACCCTACATACACACATTCCAAGTCATCGACAGCCAATCACATGCGGAGACCAAGAGTAGAATACCAAGATGAGCAAGCTCACGTGCTCCAAGCCTCACTTCCTCATGTCATAAGGTTGGGATGGAGTGAAGCAGCTATGATTGCTGGTGCTAGGGATGTTGGTGTGTCCCCGTCAATTGTGGGATCGTTCCCGAGGAAAGAGGCTGCCCTTGTTGAGTTTTTCATGGATGACTGCCTACAGAGGCTCAGTGACACAATTGAGTCCAGTACAGAGGAGTTGAGAAGTTTGATACCCAGTGAGCGTATCACCAAGCTTGTCAGAGTTCGCTTGGAAATGCAGGCCCCCTACATATCAAAATGGCCACAAGCTCTTAGTATCCAGGCACAACCAGTGAATGTTCCCACAAGTTTTAAGCAGAGGGCACTGCTTGTTGATGAGATATGGCATGGTGCTGGCGACATCACCTCTGATTTTGATTGGTATGTGAAGCGGACTGTCCTTGGAGGAATATACTCCACAACTGAGATTTACATGCTTACTGATAATTCCCCAAATTTTTGTGATACGTGGGCATTTTTGGATGATCGGGTGAAAGATTCTTTCGACTTGAAGAAGACCATTCAAGAGGCAACATACTTGGCAGAAGCCGTTGGTGCTGGGATGGGGACCTCTTTGCAAGGATTTATGAAGAGTGTTTTTCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

289

Amino Acids

32.35

Weight (kDa)

7.02

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COQ9 PF08511 186 - 255 2.8e-27 COQ9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 202, 649
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 1 cut(s) 77
AcvI CACGTG 1 cut(s) 241
AfaI GTAC 2 cut(s) 5, 427
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 769, 782
AjnI CCWGG 1 cut(s) 537
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 4 cut(s) 236, 293, 472, 527
AluI AGCT 4 cut(s) 236, 293, 472, 527
Alw21I GWGCWC 2 cut(s) 46, 246
Alw26I GTCTC 1 cut(s) 199
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 2 cut(s) 498, 518
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 14, 63, 290, 362
ApoI RAATTY 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 499, 825
AsuHPI GGTGA 3 cut(s) 457, 613, 760
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 1 cut(s) 825
BaeGI GKGCMC 2 cut(s) 46, 583
BalI TGGCCA 1 cut(s) 520
BbrPI CACGTG 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 2 cut(s) 46, 246
BbvI GCAGC 4 cut(s) 26, 75, 302, 349
BccI CCATC 2 cut(s) 273, 814
BceAI ACGGC 2 cut(s) 93, 791
BciT130I CCWGG 1 cut(s) 539
BciVI GTATCC 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 395
BfrI CTTAAG 1 cut(s) 49
BfuI GTATCC 1 cut(s) 545
BisI GCNGC 4 cut(s) 15, 64, 291, 363
BlsI GCNGC 4 cut(s) 16, 65, 292, 364
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 825
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 499, 825
BmiI GGNNCC 2 cut(s) 501, 826
BmrFI CCNGG 1 cut(s) 539
BmrI ACTGGG 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 779
BsaAI YACGTR 2 cut(s) 241, 726
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 37, 350, 658
Bse1I ACTGG 3 cut(s) 423, 453, 548
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 3 cut(s) 37, 350, 658
BseGI GGATG 5 cut(s) 284, 319, 391, 745, 825
BseMII CTCAG 2 cut(s) 418, 672
BseNI ACTGG 3 cut(s) 423, 453, 548
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 2 cut(s) 46, 583
BseXI GCAGC 4 cut(s) 26, 75, 302, 349
BseYI CCCAGC 1 cut(s) 815
BshFI GGCC 2 cut(s) 500, 520
BsiHKAI GWGCWC 2 cut(s) 46, 246
BsiHKCI CYCGRG 1 cut(s) 349
BslFI GGGAC 3 cut(s) 82, 310, 838
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 3 cut(s) 82, 310, 838
BsnI GGCC 2 cut(s) 500, 520
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 46, 246, 583
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 8, 341, 742
BspACI CCGC 2 cut(s) 202, 649
BspANI GGCC 2 cut(s) 500, 520
BspCNI CTCAG 2 cut(s) 417, 673
BspLI GGNNCC 2 cut(s) 501, 826
BspPI GGATC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 423, 453, 548
BssECI CCNNGG 3 cut(s) 37, 350, 658
BssMI GATC 3 cut(s) 8, 341, 742
BssT1I CCWWGG 2 cut(s) 37, 658
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 4 cut(s) 59, 71, 130, 655
Bst6I CTCTTC 2 cut(s) 96, 842
BstAFI CTTAAG 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 241, 726
BstC8I GCNNGC 3 cut(s) 234, 498, 613
BstDEI CTNAG 3 cut(s) 404, 530, 681
BstF5I GGATG 5 cut(s) 284, 319, 391, 745, 825
BstKTI GATC 3 cut(s) 11, 344, 745
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 3 cut(s) 8, 341, 742
BstMWI GCNNNNNNNGC 3 cut(s) 114, 299, 812
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 2 cut(s) 202, 694
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 2 cut(s) 46, 583
BstV1I GCAGC 4 cut(s) 26, 75, 302, 349
BstV2I GAAGAC 1 cut(s) 779
BstXI CCANNNNNNTGG 1 cut(s) 38
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 2 cut(s) 500, 520
BtsCI GGATG 5 cut(s) 284, 319, 391, 745, 825
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 5 cut(s) 126, 412, 460, 555, 581
Cac8I GCNNGC 3 cut(s) 234, 498, 613
Cfr13I GGNCC 2 cut(s) 499, 825
Csp6I GTAC 2 cut(s) 4, 426
CviAII CATG 5 cut(s) 199, 263, 382, 605, 691
CviQI GTAC 2 cut(s) 4, 426
DdeI CTNAG 3 cut(s) 404, 530, 681
DpnI GATC 3 cut(s) 10, 343, 744
DpnII GATC 3 cut(s) 8, 341, 742
EaeI YGGCCR 1 cut(s) 518
Eam1104I CTCTTC 2 cut(s) 96, 842
EarI CTCTTC 2 cut(s) 96, 842
Eco130I CCWWGG 2 cut(s) 37, 658
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 349
EcoO109I RGGNCCY 2 cut(s) 499, 825
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 37, 658
ErhI CCWWGG 2 cut(s) 37, 658
FaeI CATG 5 cut(s) 202, 266, 385, 608, 694
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 3 cut(s) 82, 310, 838
FatI CATG 5 cut(s) 198, 262, 381, 604, 690
Fnu4HI GCNGC 4 cut(s) 15, 64, 291, 363
FokI GGATG 5 cut(s) 291, 326, 398, 752, 832
Fsp4HI GCNGC 4 cut(s) 15, 64, 291, 363
FspBI CTAG 1 cut(s) 309
GluI GCNGC 4 cut(s) 15, 64, 291, 363
GsaI CCCAGC 1 cut(s) 819
HaeIII GGCC 2 cut(s) 500, 520
Hin1II CATG 5 cut(s) 202, 266, 385, 608, 694
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 419, 755
HphI GGTGA 3 cut(s) 457, 613, 760
Hpy166II GTNNAC 2 cut(s) 44, 133
Hpy188I TCNGA 4 cut(s) 139, 479, 628, 861
Hpy188III TCNNGA 3 cut(s) 155, 349, 782
Hpy8I GTNNAC 2 cut(s) 44, 133
HpyCH4III ACNGT 4 cut(s) 59, 71, 130, 655
HpyCH4IV ACGT 2 cut(s) 240, 725
HpyCH4V TGCA 3 cut(s) 44, 496, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 299, 812
HpyF3I CTNAG 3 cut(s) 404, 530, 681
HpySE526I ACGT 2 cut(s) 240, 725
Hsp92II CATG 5 cut(s) 202, 266, 385, 608, 694
Kzo9I GATC 3 cut(s) 8, 341, 742
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 9 cut(s) 288, 436, 466, 482, 524, 551, 561, 597, 801
Lsp1109I GCAGC 4 cut(s) 26, 75, 302, 349
MaeI CTAG 1 cut(s) 309
MaeII ACGT 2 cut(s) 240, 725
MaeIII GTNAC 2 cut(s) 53, 407
MalI GATC 3 cut(s) 10, 343, 744
MboI GATC 3 cut(s) 8, 341, 742
MboII GAAGA 4 cut(s) 83, 781, 784, 859
MfeI CAATTG 2 cut(s) 333, 414
MhlI GDGCHC 3 cut(s) 46, 246, 583
MlsI TGGCCA 1 cut(s) 520
MluCI AATT 4 cut(s) 333, 414, 703, 712
MluNI TGGCCA 1 cut(s) 520
MlyI GAGTC 1 cut(s) 428
Mox20I TGGCCA 1 cut(s) 520
MscI TGGCCA 1 cut(s) 520
MseI TTAA 2 cut(s) 50, 570
Msp20I TGGCCA 1 cut(s) 520
MspCI CTTAAG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 539
MunI CAATTG 2 cut(s) 333, 414
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 3 cut(s) 114, 299, 812
NdeII GATC 3 cut(s) 8, 341, 742
NlaIII CATG 5 cut(s) 202, 266, 385, 608, 694
NlaIV GGNNCC 2 cut(s) 501, 826
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 2 cut(s) 202, 694
PfeI GAWTC 1 cut(s) 755
PkrI GCNGC 4 cut(s) 16, 65, 292, 364
PleI GAGTC 1 cut(s) 427
PmaCI CACGTG 1 cut(s) 241
PmlI CACGTG 1 cut(s) 241
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 2 cut(s) 241, 726
PpuMI RGGWCCY 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 537
PspCI CACGTG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 501, 826
PspPI GGNCC 2 cut(s) 499, 825
PspPPI RGGWCCY 1 cut(s) 825
RsaI GTAC 2 cut(s) 5, 427
RsaNI GTAC 2 cut(s) 4, 426
SaqAI TTAA 2 cut(s) 50, 570
SatI GCNGC 4 cut(s) 15, 64, 291, 363
Sau3AI GATC 3 cut(s) 8, 341, 742
Sau96I GGNCC 2 cut(s) 499, 825
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 3 cut(s) 46, 246, 583
SetI ASST 9 cut(s) 238, 243, 275, 295, 474, 529, 626, 728, 830
SfcI CTRYAG 1 cut(s) 395
SinI GGWCC 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 4 cut(s) 333, 414, 703, 712
SsiI CCGC 2 cut(s) 202, 649
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 2 cut(s) 37, 658
TaaI ACNGT 4 cut(s) 59, 71, 130, 655
TaiI ACGT 2 cut(s) 243, 728
TaqI TCGA 2 cut(s) 185, 762
TasI AATT 4 cut(s) 333, 414, 703, 712
TatI WGTACW 2 cut(s) 3, 425
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 2 cut(s) 50, 570
Tru9I TTAA 2 cut(s) 50, 570
TscAI CASTG 5 cut(s) 133, 412, 460, 555, 588
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 14, 63, 290, 362
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 370, 860
TspRI CASTG 5 cut(s) 133, 412, 460, 555, 588
Vha464I CTTAAG 1 cut(s) 49
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 1 cut(s) 712
XceI RCATGY 2 cut(s) 202, 694
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.