Rmu_sc0027978.1_g000001

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027978.1
OG0009366
Physical Location & Seq
Forward (+)
228 .. 1094
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027978.1_g000001.1.cds

Sequence Viewer

Length: 867 bp
atgtacagatcagcagctaagcggcttctacattccctgggtgcacccttgagtaacagtagcagcaaccgtattattcggtttcgccctcttcagtcccttatcagccattctcgcttttccaccactgtcaactctgaaccctttgtcagtcaaagccctacttactcagattccacgtcttcaacagccgatcacacgtgcagaccaagagtagaataccaagatgagcaagcttgcgtgctccaagcctcacttccccatgtcataaggttgggatggagtgaagcagctatgattgctggtgcgagggatgttggtgtgtctccgtcgattgtgggatcgttcccaaggaaagaggctgcccttgttgagtttttcatggatgactgcctgcaaaggctcagtgatacaattgagtccagtacagaggagttgagaagtttgatacccagcgagcgtatcaccaagcttgtaagaattcgcttggaaatgcaggcgctctacatatcaaaatggcctcaagctcttagtatccaggcacaacctgtgaatgttcccacaagttttaagcagagggcactccttgttgatgagatctggcatggtgctggtgacgacacctctgattttgattggtatgtgaaacggactgtccttggagggatatactccacaactgagatttacatgcttactgataattccccaaatttttgtgatacgtgggcattcttggataatcgggtgaaagattcttttgacttgaagaagaccattcgagaggcaacatacttggcagaagccgttggtgctggaatggggtcctctttgcaaggatttgtgaagagcgtgtttcgggggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

288

Amino Acids

32.15

Weight (kDa)

6.53

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 2 cut(s) 480, 712
AcuI CTGAAG 1 cut(s) 77
AcvI CACGTG 1 cut(s) 201
AfaI GTAC 2 cut(s) 5, 427
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 2 cut(s) 186, 769
AjiI CACGTC 1 cut(s) 180
AjnI CCWGG 2 cut(s) 36, 537
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 5 cut(s) 17, 236, 293, 472, 527
AluI AGCT 5 cut(s) 17, 236, 293, 472, 527
Alw21I GWGCWC 2 cut(s) 46, 246
Alw26I GTCTC 1 cut(s) 330
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 349
AoxI GGCC 1 cut(s) 518
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 14, 63, 290, 362
ApoI RAATTY 2 cut(s) 480, 712
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 1 cut(s) 825
AsuHPI GGTGA 3 cut(s) 457, 626, 760
AvaII GGWCC 1 cut(s) 825
BaeGI GKGCMC 2 cut(s) 46, 583
BbrPI CACGTG 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 174, 779
Bbv12I GWGCWC 2 cut(s) 46, 246
BbvI GCAGC 4 cut(s) 26, 75, 302, 349
BccI CCATC 1 cut(s) 273
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 2 cut(s) 38, 539
BciVI GTATCC 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 503
BfuI GTATCC 1 cut(s) 545
BglII AGATCT 1 cut(s) 597
BisI GCNGC 5 cut(s) 15, 23, 64, 291, 363
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 5 cut(s) 16, 24, 65, 292, 364
Bme1390I CCNGG 2 cut(s) 38, 539
Bme18I GGWCC 1 cut(s) 825
BmgBI CACGTC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 1 cut(s) 826
BmrFI CCNGG 2 cut(s) 38, 539
BpiI GAAGAC 2 cut(s) 174, 779
Bpu1102I GCTNAGC 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 70, 507
BsaAI YACGTR 2 cut(s) 201, 726
BsaJI CCNNGG 4 cut(s) 36, 37, 350, 658
Bse1I ACTGG 1 cut(s) 423
BseBI CCWGG 2 cut(s) 38, 539
BseDI CCNNGG 4 cut(s) 36, 37, 350, 658
BseGI GGATG 3 cut(s) 284, 319, 391
BseMII CTCAG 3 cut(s) 183, 418, 672
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 2 cut(s) 46, 583
BseXI GCAGC 4 cut(s) 26, 75, 302, 349
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 1 cut(s) 520
BsiHKAI GWGCWC 2 cut(s) 46, 246
BslFI GGGAC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 1 cut(s) 520
Bsp1286I GDGCHC 3 cut(s) 46, 246, 583
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 8, 193, 341, 597
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 3 cut(s) 182, 417, 673
BspLI GGNNCC 1 cut(s) 826
BspPI GGATC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 842
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 4 cut(s) 36, 37, 350, 658
BssMI GATC 4 cut(s) 8, 193, 341, 597
BssT1I CCWWGG 2 cut(s) 350, 658
Bst2UI CCWGG 2 cut(s) 38, 539
Bst4CI ACNGT 4 cut(s) 59, 71, 130, 655
Bst6I CTCTTC 2 cut(s) 96, 842
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 201, 726
BstC8I GCNNGC 6 cut(s) 234, 238, 242, 395, 458, 498
BstDEI CTNAG 5 cut(s) 18, 169, 404, 530, 681
BstF5I GGATG 3 cut(s) 284, 319, 391
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 4 cut(s) 11, 196, 344, 600
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 4 cut(s) 8, 193, 341, 597
BstMWI GCNNNNNNNGC 3 cut(s) 114, 299, 812
BstNI CCWGG 2 cut(s) 38, 539
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 2 cut(s) 36, 537
BstSLI GKGCMC 2 cut(s) 46, 583
BstV1I GCAGC 4 cut(s) 26, 75, 302, 349
BstV2I GAAGAC 2 cut(s) 174, 779
BstX2I RGATCY 1 cut(s) 597
BstYI RGATCY 1 cut(s) 597
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 1 cut(s) 520
BtrI CACGTC 1 cut(s) 180
BtsCI GGATG 3 cut(s) 284, 319, 391
BtsIMutI CAGTG 2 cut(s) 126, 412
Cac8I GCNNGC 6 cut(s) 234, 238, 242, 395, 458, 498
CfoI GCGC 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 825
Csp6I GTAC 2 cut(s) 4, 426
CviAII CATG 4 cut(s) 263, 382, 605, 691
CviQI GTAC 2 cut(s) 4, 426
DdeI CTNAG 5 cut(s) 18, 169, 404, 530, 681
DpnI GATC 4 cut(s) 10, 195, 343, 599
DpnII GATC 4 cut(s) 8, 193, 341, 597
Eam1104I CTCTTC 2 cut(s) 96, 842
EarI CTCTTC 2 cut(s) 96, 842
Eco130I CCWWGG 2 cut(s) 350, 658
Eco47I GGWCC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 825
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 36, 537
EcoT14I CCWWGG 2 cut(s) 350, 658
ErhI CCWWGG 2 cut(s) 350, 658
FaeI CATG 4 cut(s) 266, 385, 608, 694
FalI AAGNNNNNCTT 4 cut(s) 148, 180, 240, 272
FaqI GGGAC 1 cut(s) 82
FatI CATG 4 cut(s) 262, 381, 604, 690
Fnu4HI GCNGC 5 cut(s) 15, 23, 64, 291, 363
FokI GGATG 3 cut(s) 291, 326, 398
Fsp4HI GCNGC 5 cut(s) 15, 23, 64, 291, 363
GlaI GCGC 1 cut(s) 501
GluI GCNGC 5 cut(s) 15, 23, 64, 291, 363
GsaI CCCAGC 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 1 cut(s) 520
HhaI GCGC 1 cut(s) 502
Hin1II CATG 4 cut(s) 266, 385, 608, 694
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 2 cut(s) 234, 470
HinfI GANTC 3 cut(s) 173, 419, 755
HphI GGTGA 3 cut(s) 457, 626, 760
Hpy166II GTNNAC 2 cut(s) 44, 133
Hpy188I TCNGA 3 cut(s) 139, 172, 628
Hpy188III TCNNGA 1 cut(s) 782
Hpy8I GTNNAC 2 cut(s) 44, 133
Hpy99I CGWCG 1 cut(s) 334
HpyCH4III ACNGT 4 cut(s) 59, 71, 130, 655
HpyCH4IV ACGT 3 cut(s) 179, 200, 725
HpyCH4V TGCA 5 cut(s) 44, 204, 397, 496, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 299, 812
HpyF3I CTNAG 5 cut(s) 18, 169, 404, 530, 681
HpySE526I ACGT 3 cut(s) 179, 200, 725
Hsp92II CATG 4 cut(s) 266, 385, 608, 694
HspAI GCGC 1 cut(s) 500
Kzo9I GATC 4 cut(s) 8, 193, 341, 597
LguI GCTCTTC 1 cut(s) 842
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 4 cut(s) 26, 75, 302, 349
MaeII ACGT 3 cut(s) 179, 200, 725
MaeIII GTNAC 2 cut(s) 53, 614
MalI GATC 4 cut(s) 10, 195, 343, 599
MboI GATC 4 cut(s) 8, 193, 341, 597
MboII GAAGA 5 cut(s) 83, 174, 781, 784, 859
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 597
MhlI GDGCHC 3 cut(s) 46, 246, 583
MluCI AATT 4 cut(s) 414, 480, 703, 712
MlyI GAGTC 1 cut(s) 428
MseI TTAA 1 cut(s) 570
MspR9I CCNGG 2 cut(s) 38, 539
MunI CAATTG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 2 cut(s) 38, 539
MwoI GCNNNNNNNGC 3 cut(s) 114, 299, 812
NdeII GATC 4 cut(s) 8, 193, 341, 597
NlaIII CATG 4 cut(s) 266, 385, 608, 694
NlaIV GGNNCC 1 cut(s) 826
NmuCI GTSAC 1 cut(s) 614
NspI RCATGY 1 cut(s) 694
PasI CCCWGGG 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 842
PctI GAATGC 1 cut(s) 731
PfeI GAWTC 2 cut(s) 173, 755
PkrI GCNGC 5 cut(s) 16, 24, 65, 292, 364
PleI GAGTC 1 cut(s) 427
PmaCI CACGTG 1 cut(s) 201
PmlI CACGTG 1 cut(s) 201
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 2 cut(s) 201, 726
PpuMI RGGWCCY 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 36, 537
PspCI CACGTG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 2 cut(s) 36, 537
PspN4I GGNNCC 1 cut(s) 826
PspPI GGNCC 1 cut(s) 825
PspPPI RGGWCCY 1 cut(s) 825
PsuI RGATCY 1 cut(s) 597
RsaI GTAC 2 cut(s) 5, 427
RsaNI GTAC 2 cut(s) 4, 426
SapI GCTCTTC 1 cut(s) 842
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 5 cut(s) 15, 23, 64, 291, 363
Sau3AI GATC 4 cut(s) 8, 193, 341, 597
Sau96I GGNCC 1 cut(s) 825
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 2 cut(s) 38, 539
SduI GDGCHC 3 cut(s) 46, 246, 583
SinI GGWCC 1 cut(s) 825
SmlI CTYRAG 2 cut(s) 49, 522
SmoI CTYRAG 2 cut(s) 49, 522
Sse9I AATT 4 cut(s) 414, 480, 703, 712
SsiI CCGC 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 36, 537
StyI CCWWGG 2 cut(s) 350, 658
TaaI ACNGT 4 cut(s) 59, 71, 130, 655
TaiI ACGT 3 cut(s) 182, 203, 728
TaqI TCGA 2 cut(s) 332, 781
TasI AATT 4 cut(s) 414, 480, 703, 712
TatI WGTACW 2 cut(s) 3, 425
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 2 cut(s) 173, 755
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 2 cut(s) 133, 412
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 4 cut(s) 14, 63, 290, 362
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 2 cut(s) 318, 664
TspRI CASTG 2 cut(s) 133, 412
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 2 cut(s) 480, 712
XceI RCATGY 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.