Rh1DG129200

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009366
Physical Location & Seq
Reverse (-)
26933216 .. 26934082
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG129200.1

Sequence Viewer

Length: 867 bp
ATGTACAGATCAGCAGCGAAGCGGCTTCTCCATTCCCTTGCTGCACCCTTGAGTGAGAGTAGCAGCAACCGTATTATTCGGTTTCGCCCTCTTCAGTCCCTCATCAGTCATTCTCGCTTTTCCACCACTGTCAACTCTGAACCCTTTGTCAGTCAAAGCCCTACTTACTCAGATTCCACGTCGTCAACGGCCGATCACACGCGCAGACCAAGAGTAGAATACCAAGATGAGCAAGCTCGCGTGCTCCAAGCCTCACTTCCCCATGTCATAAGGTTGGGATGGAGTGAAGCAGCTCTGATTGCTGGTGCGAGGGATGTTGGTGTGTCTCCGTCAATTGTGGGATCATTCCCAAGGAAGGAGGCTGCCCTTGTTGAGTTTTTCATGGATGACTGCCTGCAAAGGCTCAGTGATACAATTGAGTCCGGTGCAGAGGAGTTGAGAAGTTTGATACCCAGCGAGCGTATCACCAAGCTTGTAAGAATTCGCTTGGAAATGCAGGCGCCCTACATATCAAAATGGCCTCAAGCTCTTAGTATCCAGGCACAACCTGTGAATGTTCCCACAAGTTTTAAGCAGAGGGCACTCCTTGTTGATGAGATCTGGCATGGTGCTGGTGACGACACCTCTGATTTTGATTGGTATGTGAAACGGACTGTCCTTGGAGGGATATACTCCACAGCTGAGATTTACATGCTTACTGATAATTCCCCAAATTTTTGTGATACGTGGGCATTCTTGGATAATCGGGTGAAAGATTCTTTCGACTTGAAGAAGACCATTCAAGAGGCAACATACTTGGCAGAAGCCGTTGGTGCTGGAATGGGGACCTCTTTGCAAGGATTTGTGAAGAGCGTGTTTCGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

288

Amino Acids

32.14

Weight (kDa)

6.54

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COQ9 PF08511 186 - 255 4.2e-27 COQ9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 499
AccII CGCG 2 cut(s) 202, 240
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 2 cut(s) 480, 712
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 2 cut(s) 769, 782
AjiI CACGTC 1 cut(s) 180
AjnI CCWGG 1 cut(s) 537
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 5 cut(s) 236, 293, 472, 527, 680
AluI AGCT 5 cut(s) 236, 293, 472, 527, 680
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 349
AoxI GGCC 2 cut(s) 189, 518
ApeKI GCWGC 5 cut(s) 14, 41, 63, 290, 362
ApoI RAATTY 2 cut(s) 480, 712
AspLEI GCGC 2 cut(s) 204, 502
AspS9I GGNCC 1 cut(s) 825
AsuHPI GGTGA 3 cut(s) 457, 626, 760
AvaII GGWCC 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 583
BanI GGYRCC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 5 cut(s) 26, 28, 75, 302, 349
BccI CCATC 1 cut(s) 273
BceAI ACGGC 2 cut(s) 204, 791
BciT130I CCWGG 1 cut(s) 539
BciVI GTATCC 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 503
BfuI GTATCC 1 cut(s) 545
BglII AGATCT 1 cut(s) 597
BisI GCNGC 6 cut(s) 15, 23, 42, 64, 291, 363
BlsI GCNGC 6 cut(s) 16, 24, 43, 65, 292, 364
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 825
BmgBI CACGTC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 2 cut(s) 501, 826
BmrFI CCNGG 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 779
BpuEI CTTGAG 2 cut(s) 70, 507
BsaAI YACGTR 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 350, 658
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 2 cut(s) 350, 658
BseGI GGATG 3 cut(s) 284, 319, 391
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 3 cut(s) 183, 418, 672
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 583
BseX3I CGGCCG 1 cut(s) 189
BseXI GCAGC 5 cut(s) 26, 28, 75, 302, 349
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 2 cut(s) 27, 447
Bsh1236I CGCG 2 cut(s) 202, 240
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 191, 520
BshNI GGYRCC 1 cut(s) 499
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 2 cut(s) 82, 838
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 2 cut(s) 82, 838
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 191, 520
Bsp1286I GDGCHC 2 cut(s) 246, 583
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 8, 193, 341, 597
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 191, 520
BspCNI CTCAG 3 cut(s) 182, 417, 673
BspFNI CGCG 2 cut(s) 202, 240
BspLI GGNNCC 2 cut(s) 501, 826
BspPI GGATC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 842
BspT107I GGYRCC 1 cut(s) 499
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 2 cut(s) 350, 658
BssMI GATC 4 cut(s) 8, 193, 341, 597
BssNI GRCGYC 1 cut(s) 500
BssT1I CCWWGG 2 cut(s) 350, 658
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 3 cut(s) 71, 130, 655
Bst6I CTCTTC 2 cut(s) 96, 842
BstACI GRCGYC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 726
BstC8I GCNNGC 6 cut(s) 234, 238, 242, 395, 458, 498
BstDEI CTNAG 4 cut(s) 169, 404, 530, 681
BstF5I GGATG 3 cut(s) 284, 319, 391
BstFNI CGCG 2 cut(s) 202, 240
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 2 cut(s) 204, 502
BstKTI GATC 4 cut(s) 11, 196, 344, 600
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 4 cut(s) 8, 193, 341, 597
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 299, 812
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 583
BstUI CGCG 2 cut(s) 202, 240
BstV1I GCAGC 5 cut(s) 26, 28, 75, 302, 349
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 1 cut(s) 597
BstYI RGATCY 1 cut(s) 597
BstZI CGGCCG 1 cut(s) 189
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 2 cut(s) 191, 520
BtrI CACGTC 1 cut(s) 180
BtsCI GGATG 3 cut(s) 284, 319, 391
BtsIMutI CAGTG 2 cut(s) 126, 412
Cac8I GCNNGC 6 cut(s) 234, 238, 242, 395, 458, 498
CfoI GCGC 2 cut(s) 204, 502
Cfr13I GGNCC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 4
CviAII CATG 4 cut(s) 263, 382, 605, 691
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 169, 404, 530, 681
DinI GGCGCC 1 cut(s) 501
DpnI GATC 4 cut(s) 10, 195, 343, 599
DpnII GATC 4 cut(s) 8, 193, 341, 597
EaeI YGGCCR 1 cut(s) 189
EagI CGGCCG 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 96, 842
EarI CTCTTC 2 cut(s) 96, 842
EclXI CGGCCG 1 cut(s) 189
Eco130I CCWWGG 2 cut(s) 350, 658
Eco47I GGWCC 1 cut(s) 825
Eco52I CGGCCG 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 825
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 350, 658
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 350, 658
FaeI CATG 4 cut(s) 266, 385, 608, 694
FaiI YATR 9 cut(s) 264, 269, 383, 509, 606, 642, 670, 692, 793
FalI AAGNNNNNCTT 4 cut(s) 148, 180, 240, 272
FaqI GGGAC 2 cut(s) 82, 838
FatI CATG 4 cut(s) 262, 381, 604, 690
Fnu4HI GCNGC 6 cut(s) 15, 23, 42, 64, 291, 363
FokI GGATG 3 cut(s) 291, 326, 398
Fsp4HI GCNGC 6 cut(s) 15, 23, 42, 64, 291, 363
GlaI GCGC 2 cut(s) 203, 501
GluI GCNGC 6 cut(s) 15, 23, 42, 64, 291, 363
GsaI CCCAGC 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 2 cut(s) 191, 520
HapII CCGG 1 cut(s) 423
HhaI GCGC 2 cut(s) 204, 502
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 4 cut(s) 266, 385, 608, 694
Hin6I GCGC 2 cut(s) 202, 500
HinP1I GCGC 2 cut(s) 202, 500
HincII GTYRAC 2 cut(s) 133, 186
HindII GTYRAC 2 cut(s) 133, 186
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 173, 419, 755
HpaII CCGG 1 cut(s) 423
HphI GGTGA 3 cut(s) 457, 626, 760
Hpy166II GTNNAC 2 cut(s) 133, 186
Hpy188I TCNGA 4 cut(s) 139, 172, 297, 628
Hpy188III TCNNGA 1 cut(s) 782
Hpy8I GTNNAC 2 cut(s) 133, 186
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 3 cut(s) 71, 130, 655
HpyCH4IV ACGT 2 cut(s) 179, 725
HpyCH4V TGCA 5 cut(s) 44, 397, 428, 496, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 812
HpyF3I CTNAG 4 cut(s) 169, 404, 530, 681
HpySE526I ACGT 2 cut(s) 179, 725
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 4 cut(s) 266, 385, 608, 694
HspAI GCGC 2 cut(s) 202, 500
KasI GGCGCC 1 cut(s) 499
Kzo9I GATC 4 cut(s) 8, 193, 341, 597
LguI GCTCTTC 1 cut(s) 842
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 5 cut(s) 26, 28, 75, 302, 349
MaeII ACGT 2 cut(s) 179, 725
MaeIII GTNAC 1 cut(s) 614
MalI GATC 4 cut(s) 10, 195, 343, 599
MboI GATC 4 cut(s) 8, 193, 341, 597
MboII GAAGA 4 cut(s) 83, 781, 784, 859
MfeI CAATTG 2 cut(s) 333, 414
MflI RGATCY 1 cut(s) 597
MhlI GDGCHC 2 cut(s) 246, 583
MluCI AATT 5 cut(s) 333, 414, 480, 703, 712
Mly113I GGCGCC 1 cut(s) 500
MlyI GAGTC 1 cut(s) 428
MseI TTAA 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 539
MunI CAATTG 2 cut(s) 333, 414
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 2 cut(s) 202, 240
MwoI GCNNNNNNNGC 2 cut(s) 299, 812
NarI GGCGCC 1 cut(s) 500
NdeII GATC 4 cut(s) 8, 193, 341, 597
NlaIII CATG 4 cut(s) 266, 385, 608, 694
NlaIV GGNNCC 2 cut(s) 501, 826
NmuCI GTSAC 1 cut(s) 614
NspI RCATGY 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 842
PctI GAATGC 1 cut(s) 731
PfeI GAWTC 2 cut(s) 173, 755
PkrI GCNGC 6 cut(s) 16, 24, 43, 65, 292, 364
PleI GAGTC 1 cut(s) 427
PluTI GGCGCC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 726
PpuMI RGGWCCY 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 501, 826
PspPI GGNCC 1 cut(s) 825
PspPPI RGGWCCY 1 cut(s) 825
PsuI RGATCY 1 cut(s) 597
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 842
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 6 cut(s) 15, 23, 42, 64, 291, 363
Sau3AI GATC 4 cut(s) 8, 193, 341, 597
Sau96I GGNCC 1 cut(s) 825
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 2 cut(s) 246, 583
SfoI GGCGCC 1 cut(s) 501
SinI GGWCC 1 cut(s) 825
SmlI CTYRAG 2 cut(s) 49, 522
SmoI CTYRAG 2 cut(s) 49, 522
Sse9I AATT 5 cut(s) 333, 414, 480, 703, 712
SsiI CCGC 1 cut(s) 22
SspDI GGCGCC 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 2 cut(s) 350, 658
TaaI ACNGT 3 cut(s) 71, 130, 655
TaiI ACGT 2 cut(s) 182, 728
TaqI TCGA 1 cut(s) 762
TasI AATT 5 cut(s) 333, 414, 480, 703, 712
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 2 cut(s) 173, 755
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 2 cut(s) 133, 412
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 5 cut(s) 14, 41, 63, 290, 362
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 2 cut(s) 318, 664
TspRI CASTG 2 cut(s) 133, 412
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 2 cut(s) 480, 712
XceI RCATGY 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.