Rh1BG094600

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009366
Physical Location & Seq
Reverse (-)
16511880 .. 16513026
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG094600.1

Sequence Viewer

Length: 864 bp
ATGTACAGATCAGCAGCGAAGCGGCTTCTACATTCCCTTTCTGCACCCTTGAGTGAGAGTAGCAGCAACCGTGTTGTTCGGTTTCGCCCTCTTCAGTCCCTCAGTCATTCTCGCTTTTCCACCACTGTCAACTCTGAACCCTTTGTCAGTCAAAACCCTACTTACTCAGATTCCACGTCGTCAACAGCCGATCACACGCGCAGACCAAGAGTAGAATACCAAGATGAGCAAGCTCACGTGCTCCAAGCCTCACTTCCCCATGTCATAAGGTTGGGATGGAGTGAAGCAGCTATGATTGCTGGTGCGAGGGATGTTGGTGTGTCTCCATCAATTGTGGGATCGTTCCCAAGGAAAGAGGCTGCCCTTGTTGAGTTTTTCATGGATGACTGCCTGCAAGGGCTCAGTGATACAATTGAGTCCAGTACAGAGGAGTTGAGAAGTTTGATACCCAGCGAGCGTATCACCAAGCTTGTAAGAATTCGCTTGGAAATGCAGGCGCCCTACATATCAAAATGGCCTCAAGCTCTTAGTATCCAGGCACAACCTGTGAATGTTCCCACAAGTTTTAAGCAGAGGGCACTCCTTGTTGATGAGATCTGGCATGGTGCTGGTGACGATACCTGTGATTTTGATTGGTATGTGAAACGGACTGTCCTTGGAGGGATATACTCCACAACTGAGATTTACATGCTTACTGATAATTCCCCAAATTTTTGTGATACGTGGGCATTCTTGGATAATCGGGTGAAAGATTCTTTTGACTTGAAGAAGACCATTCAAGAGGCAACATACTTGGCAGAAGCCGTTGGTGCTGGAATGGGGACCTCTTTGCAAGGATTTGTGAAGAGCGTGTTTCGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

287

Amino Acids

32.05

Weight (kDa)

6.09

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COQ9 PF08511 185 - 254 3e-27 COQ9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccII CGCG 1 cut(s) 199
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 346
AcsI RAATTY 2 cut(s) 477, 709
AcuI CTGAAG 1 cut(s) 77
AcvI CACGTG 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 2 cut(s) 5, 424
AgsI TTSAA 2 cut(s) 766, 779
AjiI CACGTC 1 cut(s) 177
AjnI CCWGG 1 cut(s) 534
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 4 cut(s) 233, 290, 469, 524
AluI AGCT 4 cut(s) 233, 290, 469, 524
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 346
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 4 cut(s) 14, 63, 287, 359
ApoI RAATTY 2 cut(s) 477, 709
AspLEI GCGC 2 cut(s) 201, 499
AspS9I GGNCC 1 cut(s) 822
AsuHPI GGTGA 3 cut(s) 454, 623, 757
AvaII GGWCC 1 cut(s) 822
BaeGI GKGCMC 1 cut(s) 580
BanI GGYRCC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 402
BbrPI CACGTG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 776
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 4 cut(s) 26, 75, 299, 346
BccI CCATC 2 cut(s) 270, 334
BceAI ACGGC 1 cut(s) 788
BciT130I CCWGG 1 cut(s) 536
BciVI GTATCC 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 500
BfuI GTATCC 1 cut(s) 542
BglII AGATCT 1 cut(s) 594
BisI GCNGC 5 cut(s) 15, 23, 64, 288, 360
BlsI GCNGC 5 cut(s) 16, 24, 65, 289, 361
Bme1390I CCNGG 1 cut(s) 536
Bme18I GGWCC 1 cut(s) 822
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 2 cut(s) 498, 823
BmrFI CCNGG 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 776
BpuEI CTTGAG 2 cut(s) 70, 504
BsaAI YACGTR 2 cut(s) 238, 723
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 347, 655
Bse1I ACTGG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 2 cut(s) 347, 655
BseGI GGATG 3 cut(s) 281, 316, 388
BseMII CTCAG 4 cut(s) 115, 180, 415, 669
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 443
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 4 cut(s) 26, 75, 299, 346
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 517
BshNI GGYRCC 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 243
BslFI GGGAC 2 cut(s) 82, 835
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 82, 835
BsmI GAATGC 1 cut(s) 728
BsnI GGCC 1 cut(s) 517
Bsp1286I GDGCHC 3 cut(s) 243, 402, 580
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 8, 190, 338, 594
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 4 cut(s) 114, 179, 414, 670
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 498, 823
BspPI GGATC 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 839
BspT107I GGYRCC 1 cut(s) 496
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 347, 655
BssMI GATC 4 cut(s) 8, 190, 338, 594
BssNI GRCGYC 1 cut(s) 497
BssT1I CCWWGG 2 cut(s) 347, 655
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 3 cut(s) 71, 127, 652
Bst6I CTCTTC 2 cut(s) 96, 839
BstACI GRCGYC 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 238, 723
BstC8I GCNNGC 4 cut(s) 231, 392, 455, 495
BstDEI CTNAG 5 cut(s) 101, 166, 401, 527, 678
BstF5I GGATG 3 cut(s) 281, 316, 388
BstFNI CGCG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 2 cut(s) 201, 499
BstKTI GATC 4 cut(s) 11, 193, 341, 597
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 4 cut(s) 8, 190, 338, 594
BstMWI GCNNNNNNNGC 2 cut(s) 296, 809
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 4 cut(s) 26, 75, 299, 346
BstV2I GAAGAC 1 cut(s) 776
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 1 cut(s) 517
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 3 cut(s) 281, 316, 388
BtsIMutI CAGTG 2 cut(s) 123, 409
Cac8I GCNNGC 4 cut(s) 231, 392, 455, 495
CfoI GCGC 2 cut(s) 201, 499
Cfr13I GGNCC 1 cut(s) 822
Csp6I GTAC 2 cut(s) 4, 423
CviAII CATG 4 cut(s) 260, 379, 602, 688
CviQI GTAC 2 cut(s) 4, 423
DdeI CTNAG 5 cut(s) 101, 166, 401, 527, 678
DinI GGCGCC 1 cut(s) 498
DpnI GATC 4 cut(s) 10, 192, 340, 596
DpnII GATC 4 cut(s) 8, 190, 338, 594
Eam1104I CTCTTC 2 cut(s) 96, 839
EarI CTCTTC 2 cut(s) 96, 839
Eco130I CCWWGG 2 cut(s) 347, 655
Eco24I GRGCYC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 822
Eco57I CTGAAG 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 822
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 534
EcoT14I CCWWGG 2 cut(s) 347, 655
EcoT38I GRGCYC 1 cut(s) 402
EgeI GGCGCC 1 cut(s) 498
EheI GGCGCC 1 cut(s) 498
ErhI CCWWGG 2 cut(s) 347, 655
FaeI CATG 4 cut(s) 263, 382, 605, 691
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 2 cut(s) 82, 835
FatI CATG 4 cut(s) 259, 378, 601, 687
Fnu4HI GCNGC 5 cut(s) 15, 23, 64, 288, 360
FokI GGATG 3 cut(s) 288, 323, 395
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 5 cut(s) 15, 23, 64, 288, 360
GlaI GCGC 2 cut(s) 200, 498
GluI GCNGC 5 cut(s) 15, 23, 64, 288, 360
GsaI CCCAGC 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 1 cut(s) 517
HhaI GCGC 2 cut(s) 201, 499
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 4 cut(s) 263, 382, 605, 691
Hin6I GCGC 2 cut(s) 199, 497
HinP1I GCGC 2 cut(s) 199, 497
HincII GTYRAC 2 cut(s) 130, 183
HindII GTYRAC 2 cut(s) 130, 183
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 3 cut(s) 170, 416, 752
HphI GGTGA 3 cut(s) 454, 623, 757
Hpy166II GTNNAC 2 cut(s) 130, 183
Hpy188I TCNGA 2 cut(s) 136, 169
Hpy188III TCNNGA 1 cut(s) 779
Hpy8I GTNNAC 2 cut(s) 130, 183
Hpy99I CGWCG 1 cut(s) 181
HpyCH4III ACNGT 3 cut(s) 71, 127, 652
HpyCH4IV ACGT 3 cut(s) 176, 237, 722
HpyCH4V TGCA 4 cut(s) 44, 394, 493, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 809
HpyF3I CTNAG 5 cut(s) 101, 166, 401, 527, 678
HpySE526I ACGT 3 cut(s) 176, 237, 722
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 4 cut(s) 263, 382, 605, 691
HspAI GCGC 2 cut(s) 199, 497
KasI GGCGCC 1 cut(s) 496
Kzo9I GATC 4 cut(s) 8, 190, 338, 594
LguI GCTCTTC 1 cut(s) 839
LmnI GCTCC 1 cut(s) 246
Lsp1109I GCAGC 4 cut(s) 26, 75, 299, 346
MaeII ACGT 3 cut(s) 176, 237, 722
MaeIII GTNAC 1 cut(s) 611
MalI GATC 4 cut(s) 10, 192, 340, 596
MboI GATC 4 cut(s) 8, 190, 338, 594
MboII GAAGA 4 cut(s) 83, 778, 781, 856
MfeI CAATTG 2 cut(s) 330, 411
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 3 cut(s) 243, 402, 580
MluCI AATT 5 cut(s) 330, 411, 477, 700, 709
Mly113I GGCGCC 1 cut(s) 497
MlyI GAGTC 1 cut(s) 425
MseI TTAA 1 cut(s) 567
MspR9I CCNGG 1 cut(s) 536
MunI CAATTG 2 cut(s) 330, 411
Mva1269I GAATGC 1 cut(s) 728
MvaI CCWGG 1 cut(s) 536
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 296, 809
NarI GGCGCC 1 cut(s) 497
NdeII GATC 4 cut(s) 8, 190, 338, 594
NlaIII CATG 4 cut(s) 263, 382, 605, 691
NlaIV GGNNCC 2 cut(s) 498, 823
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 839
PctI GAATGC 1 cut(s) 728
PfeI GAWTC 2 cut(s) 170, 752
PkrI GCNGC 5 cut(s) 16, 24, 65, 289, 361
PleI GAGTC 1 cut(s) 424
PluTI GGCGCC 1 cut(s) 500
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 2 cut(s) 238, 723
PpuMI RGGWCCY 1 cut(s) 822
Psp5II RGGWCCY 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 534
PspCI CACGTG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 2 cut(s) 498, 823
PspPI GGNCC 1 cut(s) 822
PspPPI RGGWCCY 1 cut(s) 822
PsuI RGATCY 1 cut(s) 594
RsaI GTAC 2 cut(s) 5, 424
RsaNI GTAC 2 cut(s) 4, 423
SapI GCTCTTC 1 cut(s) 839
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 5 cut(s) 15, 23, 64, 288, 360
Sau3AI GATC 4 cut(s) 8, 190, 338, 594
Sau96I GGNCC 1 cut(s) 822
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 3 cut(s) 243, 402, 580
SfoI GGCGCC 1 cut(s) 498
SinI GGWCC 1 cut(s) 822
SmlI CTYRAG 2 cut(s) 49, 519
SmoI CTYRAG 2 cut(s) 49, 519
Sse9I AATT 5 cut(s) 330, 411, 477, 700, 709
SsiI CCGC 1 cut(s) 22
SspDI GGCGCC 1 cut(s) 496
StyD4I CCNGG 1 cut(s) 534
StyI CCWWGG 2 cut(s) 347, 655
TaaI ACNGT 3 cut(s) 71, 127, 652
TaiI ACGT 3 cut(s) 179, 240, 725
TasI AATT 5 cut(s) 330, 411, 477, 700, 709
TatI WGTACW 2 cut(s) 3, 422
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 2 cut(s) 170, 752
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 130, 409
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 4 cut(s) 14, 63, 287, 359
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 2 cut(s) 130, 409
VpaK11BI GGWCC 1 cut(s) 822
XapI RAATTY 2 cut(s) 477, 709
XceI RCATGY 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.