Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002410

Physical Location & Seq

Genomic Coordinates Forward (+)

16636678 .. 16676388

Gene Structure 39711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0100000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2781 bp

ATGAAATCCTCAGTCTCGGCCATAACCCCTACCCCCAACATGGCCTTAGCCTCCGGTCTCCGCCTCTCTTCCTCTATCCTCCGTTACCGCCTCCCTGCACCGCTCAACTCCACCCGCTTCTCCGGCCTCCGCCACAGCCTCTCCGACCTCCGTTTCCTCTCAGCTTCCTCCTCTCGTACTAGGCCCCAGCTCCGCTCCATCAAAGCGAGGCCCCGCGGCGACGACGACGACAACCTCCTCGCAGGCGGCGAGGGGCAGAATGGGAATGGGAGCGTCCTTGTCAAGGACTCAGACGAGAGAATCGTTCGTGTTGAGCTCCACAAGGAGGCCACCGATGCCTACATGGCCTATGCTATGTCTGTACTGCTCGGCCGTGCCCTGCCGGACGTTCGCGACGGTCTTAAGCCCGTGCACCGCCGCATTCTGTATGCAATGCATGAATTGAGGCTTTCGTCCCGAAAACCATTCGTGAAATGTGCTAGAGTTGTTGGAGAGGTTCTAGGAAAGTTTCATCCTCATGGAGACACTGCTGTGTATGATTCCTTGGTGCGAATGGCTCAGGATTTCTCTTTACGATCCCCACTGATTCAAGGGCATGGGAATTTTGGTTCAATTGATGCTGATCCTGCAGCTGCCATGCGTTACACAGAGTGCAGATTGGAGGCGCTGACCGAAGCAATGTTGCTGTCAGATTTAGAACAGGATACGGTTGATTTTGTTCCAAACTTTGATAATTCACAAAAAGAGCCATCGCTTTTACCTGCTCGCATTCCAAATTTATTATTGAATGGTTCTTCAGGGATCGCGGTTGGCATGGCAACAAATATCCCTCCGCATAATCTTGGGGAATTGGTGGATGTTCTTAGTGTGTTGATTCATAATCCAGAAGCTACACTGCAAGAATTGCTGGAATACATGCCAGGACCTGATTTTCCAACTGGAGGAGTGATTATGGGCAACCTTGGTATCTTAGAGGCATATCGAACTGGGAGAGGACGTATTGTGGTCAGAGGAAAAACTGATATAGAATCTCTTGATTCTAAAGGCAAGCGAAGTGCAATTATCATAAAGGAGGTCCCTTACCAAACTAACAAAGCAGCTCTGGTGGAGAAGATTGCACAACTTGTAGAGGATAAGATTTTAGATGGCATTAGTGATATTAGGGATGAGAGTGACCGCACTGGAATGCGTGTAGTGATTGAGCTTAAGCGAGGATCCGACCCATCTATTGTTCTGAATAATCTATATCGCCTCACATCTCTCCAGTCCAGCTTCAGCTGTAACATGGTTGGTATTCTCAACGGTCAACCTAAACTGATGGGTCTAAAGGAATTGCTGCAGGCATTCCTAGACTTCAGATGCTCTGTTATTGAGAGACGTGCTAACTTCAAACTTTCACAAGCACAGGACAGAAGACATATTGTTGAGGGTATTGCTGTAGGCCTTGATAATCTGCAAAGAGTAATGCGTATAAGTTTGGAAGCTTCTAATAATGCAATTGCATCATCTCTTCTAAGAAATGAGTTCAACCTTTCTGAGAAACAAGCTGAGGCAATATTAGACTTCAACTTCAGAAGGCTTAATGTTATGGAGAGGAAAAAGTTTGATAATGAAAGTGAATCGTTGAAAGAGCAAATTTCAAAATTAGAAGAACTATTGTCAAGCAAAAAACATATATTGCAGGTGGTTGAACAAGAAGCAATTGACATAAAAACCAAGTTTGCTAGTCACAGGCGTTCGATGCTGGAGGAAACGGATGGTGGTCAACTTGATGATATTGATGTTATTCCAAATGATGAAATGCTTTTGGCCTTCAGTGAAAAAGGGTATGTTAAGCGGATGAAGCCTAACACGTTTAATTTGCAAAATCGAGGTACCATTGGTAAATCTGTTGGGAAATTGAGGGTAAACGATGCAATGTCAGACTTTATTGTTTGTCACGCACATGATCATGTTTTGTACTTCAGTGATAAAGGAACAGTCTACTCAGCTCGTGCATATAAAATTCCTGAGTGCAGCCGCACAGCAGCTGGTACGCCACTGGTTCAGATCTTATCTCTGTCAGATGGCGAGAGAATTACATCTGTTATTCCTGTGAGTGAGTTTGCTGGAGATCAGTTTTTACTAATGCTTACAGTGAATGGCTACATAAAGAAGGTGTCTTTGAGTTCTTTTTCATCAATCAGGTCAACCGGAATCATAGCAATTCAATTGGTCCCTGGTGATGAGCTGAAATGGGTCCGTTGCTGCACAAATGATGACCTTGTAGCGATGGCATCCCTAAACGGAATGGTCATCTTATGTTCGTCTGATATTATTCGAGCCCTAGGCAGGAACACTAGGGGTTCTGTAGCCATGCGACTTAAAGAAGGCGATAAGATGGCAAGCGTAGACATTATACCAGCAGCTATGCGGAAAGACTTGGAGAGGGTGTCAGAAGCACCAGAAAGCACGGCTAGAAGTCTGAAAGGCCCGTGGTTGTTGTTTGTGTCTGAGAATGGATATGGAAAGCGTGTTCCCTTGAGCAGATTTCACTCTTCCCGTCTGAACAGAGTGGGTCTGATAGGTTACAAGTTTTCTGCGGAGGACCGATTGGCAGCAGTTTTTGTGGTTGGATTCTCTGTGGCAGAGGATGGTGAAAGTGATGAACAAGTGGTCCTAGTAAGCCAAAGTGGTACTGTGAATAGAATTAAGGTGCGGGATATCTCAATACAGTCCCGCTATGTGTTAGGGGCCGCACTTGTAATGCCGCAAGCAACCTTGTCCAGGGTCATTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

926

Amino Acids

102.13

Weight (kDa)

8.7

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_topoisoIV	PF00521	125 - 566	2.6e-156	DNA gyrase/topoisomerase IV, subunit A
DNA_gyraseA_C	PF03989	600 - 646	2.4e-08	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	650 - 700	3.4e-07	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	707 - 750	3.8e-08	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	754 - 800	3.8e-07	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	826 - 871	9e-06	DNA gyrase C-terminal domain, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10660 AT3G10660 AT5G04870
fragaria_vesca	FvH4_6g20840 FvH4_6g20840 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490
malus_domestica	MD02G1257300.v1.1 MD07G1063300.v1.1 MD12G1044400.v1.1 MD14G1043300.v1.1
prunus_persica	Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.7G090800_v2.0.a1 Prupe.7G090800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0332341 RchiOBHm_Chr3g0464211 RchiOBHm_Chr3g0477181
rosa_laevigata	RLG00000023739 RLG00000029678
rosa_multiflora	Rmu_sc0000932.1_g000001 Rmu_sc0003422.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318280 Rroxscaffold_6G00404350 Rroxscaffold_6G00404850
rosa_rugosa	Rorug01G0100000 Rorug03G0158600
rosa_samantha	Rh1CG118000 Rh1DG129100 Rh3AG208900 Rh3CG236600 Rh3DG235400
rosa_wichuraiana	Rw1G010080 Rw3G019050 Rw3G019440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1672
Acc36I	ACCTGC	2 cut(s)	769, 1672
Acc65I	GGTACC	1 cut(s)	1874
AccB1I	GGYRCC	1 cut(s)	1874
AccBSI	CCGCTC	2 cut(s)	103, 195
AccI	GTMKAC	2 cut(s)	1983, 2391
AccII	CGCG	3 cut(s)	216, 393, 806
AclWI	GGATC	5 cut(s)	570, 617, 809, 1209, 1222
AcoI	YGGCCR	2 cut(s)	18, 370
AcsI	RAATTY	4 cut(s)	601, 775, 1635, 2004
AcuI	CTGAAG	6 cut(s)	780, 1258, 1339, 1555, 1798, 1948
AdeI	CACNNNGTG	1 cut(s)	651
AfaI	GTAC	6 cut(s)	178, 363, 1876, 1961, 2035, 2677
AfiI	CCNNNNNNNGG	6 cut(s)	40, 283, 325, 941, 2331, 2766
AflII	CTTAAG	2 cut(s)	401, 1205
AflIII	ACRYGT	1 cut(s)	1851
AjiI	CACGTC	1 cut(s)	1379
AjnI	CCWGG	3 cut(s)	919, 2218, 2765
AleI	CACNNNNGTG	1 cut(s)	530
AloI	GAACNNNNNNTCC	6 cut(s)	592, 624, 2499, 2531, 2640, 2672
Alw21I	GWGCWC	2 cut(s)	318, 414
Alw26I	GTCTC	4 cut(s)	19, 62, 516, 1369
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	5 cut(s)	570, 617, 809, 1209, 1222
AlwNI	CAGNNNCTG	2 cut(s)	926, 2030
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	9 cut(s)	629, 632, 1097, 1336, 2016, 2027, 2247, 2405, 2597
ApoI	RAATTY	4 cut(s)	601, 775, 1635, 2004
Asp718I	GGTACC	1 cut(s)	1874
AspA2I	CCTAGG	1 cut(s)	2326
AspLEI	GCGC	1 cut(s)	667
AsuHPI	GGTGA	2 cut(s)	2234, 2648
AvaII	GGWCC	6 cut(s)	923, 1075, 2215, 2239, 2587, 2656
AvrII	CCTAGG	1 cut(s)	2326
BaeGI	GKGCMC	2 cut(s)	379, 414
BaeI	ACNNNNGTAYC	2 cut(s)	949, 982
BamHI	GGATCC	1 cut(s)	1214
BanI	GGYRCC	1 cut(s)	1874
BanII	GRGCYC	2 cut(s)	318, 2326
BauI	CACGAG	1 cut(s)	1992
BbsI	GAAGAC	1 cut(s)	1420
Bbv12I	GWGCWC	2 cut(s)	318, 414
BbvCI	CCTCAGC	1 cut(s)	1548
BbvI	GCAGC	9 cut(s)	619, 641, 1109, 1323, 2028, 2039, 2234, 2417, 2609
BceAI	ACGGC	2 cut(s)	357, 2469
BciT130I	CCWGG	3 cut(s)	921, 2220, 2767
BciVI	GTATCC	1 cut(s)	697
BclI	TGATCA	1 cut(s)	1948
BcoDI	GTCTC	4 cut(s)	19, 62, 516, 1369
BfaI	CTAG	9 cut(s)	180, 480, 500, 1349, 1725, 2327, 2340, 2457, 2660
BfmI	CTRYAG	4 cut(s)	627, 1337, 1437, 2349
BfoI	RGCGCY	1 cut(s)	668
BfrI	CTTAAG	2 cut(s)	401, 1205
BfuAI	ACCTGC	2 cut(s)	769, 1672
BfuI	GTATCC	1 cut(s)	697
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	2049
BlnI	CCTAGG	1 cut(s)	2326
Bme1390I	CCNGG	3 cut(s)	921, 2220, 2767
Bme18I	GGWCC	6 cut(s)	923, 1075, 2215, 2239, 2587, 2656
BmgBI	CACGTC	1 cut(s)	1379
BmiI	GGNNCC	8 cut(s)	185, 212, 1077, 1216, 1876, 2217, 2240, 2734
BmrFI	CCNGG	3 cut(s)	921, 2220, 2767
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	7 cut(s)	325, 607, 1349, 1511, 1731, 1903, 2285
BmuI	ACTGGG	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	1420
BpmI	CTGGAG	4 cut(s)	960, 1247, 1766, 2130
Bpu10I	CCTNAGC	3 cut(s)	46, 558, 1548
BpuEI	CTTGAG	1 cut(s)	2542
BsaBI	GATNNNNATC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	7 cut(s)	214, 543, 961, 2218, 2326, 2474, 2766
BsaWI	WCCGGW	2 cut(s)	53, 2192
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 982, 1012, 2417, 2447
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 283, 325, 941, 2331, 2766
Bse1I	ACTGG	5 cut(s)	943, 991, 1186, 1264, 2046
Bse3DI	GCAATG	3 cut(s)	438, 684, 1923
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	921, 2220, 2767
BseDI	CCNNGG	7 cut(s)	214, 543, 961, 2218, 2326, 2474, 2766
BseGI	GGATG	7 cut(s)	511, 862, 1171, 1762, 1845, 2276, 2638
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	6 cut(s)	40, 283, 325, 941, 2331, 2766
BseMI	GCAATG	3 cut(s)	438, 684, 1923
BseMII	CTCAG	9 cut(s)	24, 174, 303, 572, 1527, 1539, 2001, 2001, 2484
BseNI	ACTGG	5 cut(s)	943, 991, 1186, 1264, 2046
BseRI	GAGGAG	3 cut(s)	160, 227, 957
BseSI	GKGCMC	2 cut(s)	379, 414
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	9 cut(s)	619, 641, 1109, 1323, 2028, 2039, 2234, 2417, 2609
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	4 cut(s)	81, 673, 2035, 2233
Bsh1236I	CGCG	3 cut(s)	216, 393, 806
Bsh1285I	CGRYCG	1 cut(s)	373
BshNI	GGYRCC	1 cut(s)	1874
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	2 cut(s)	318, 414
BsiSI	CCGG	4 cut(s)	54, 123, 383, 2193
BslFI	GGGAC	4 cut(s)	439, 1061, 2201, 2701
BslI	CCNNNNNNNGG	6 cut(s)	40, 283, 325, 941, 2331, 2766
BsmAI	GTCTC	4 cut(s)	19, 62, 516, 1369
BsmBI	CGTCTC	1 cut(s)	1369
BsmFI	GGGAC	4 cut(s)	439, 1061, 2201, 2701
BsmI	GAATGC	4 cut(s)	420, 768, 1191, 1343
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	4 cut(s)	318, 379, 414, 2326
Bsp143I	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
Bsp68I	TCGCGA	1 cut(s)	393
BspCNI	CTCAG	9 cut(s)	23, 173, 302, 571, 1528, 1540, 2000, 2002, 2485
BspFNI	CGCG	3 cut(s)	216, 393, 806
BspLI	GGNNCC	8 cut(s)	185, 212, 1077, 1216, 1876, 2217, 2240, 2734
BspMAI	CTGCAG	2 cut(s)	631, 1341
BspMI	ACCTGC	2 cut(s)	769, 1672
BspPI	GGATC	5 cut(s)	570, 617, 809, 1209, 1222
BspT107I	GGYRCC	1 cut(s)	1874
BspTI	CTTAAG	2 cut(s)	401, 1205
BspTNI	GGTCTC	1 cut(s)	62
BsrBI	CCGCTC	2 cut(s)	103, 195
BsrDI	GCAATG	3 cut(s)	438, 684, 1923
BsrI	ACTGG	5 cut(s)	943, 991, 1186, 1264, 2046
BssECI	CCNNGG	7 cut(s)	214, 543, 961, 2218, 2326, 2474, 2766
BssMI	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
BssSI	CACGAG	1 cut(s)	1992
BssT1I	CCWWGG	3 cut(s)	543, 961, 2326
Bst2BI	CACGAG	1 cut(s)	1992
Bst2UI	CCWGG	3 cut(s)	921, 2220, 2767
Bst4CI	ACNGT	7 cut(s)	398, 709, 1304, 1981, 2137, 2680, 2715
Bst6I	CTCTTC	3 cut(s)	73, 1515, 2542
BstAFI	CTTAAG	2 cut(s)	401, 1205
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstC8I	GCNNGC	6 cut(s)	244, 766, 1049, 1341, 2386, 2754
BstDSI	CCRYGG	2 cut(s)	214, 2474
BstENI	CCTNNNNNAGG	2 cut(s)	281, 2764
BstF5I	GGATG	7 cut(s)	511, 862, 1171, 1762, 1845, 2276, 2638
BstFNI	CGCG	3 cut(s)	216, 393, 806
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	7 cut(s)	578, 625, 804, 1217, 1951, 2052, 2116
BstMAI	GTCTC	4 cut(s)	19, 62, 516, 1369
BstMBI	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	7 cut(s)	123, 335, 344, 626, 904, 1741, 1843
BstNI	CCWGG	3 cut(s)	921, 2220, 2767
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	3 cut(s)	919, 2218, 2765
BstSFI	CTRYAG	4 cut(s)	627, 1337, 1437, 2349
BstSLI	GKGCMC	2 cut(s)	379, 414
BstUI	CGCG	3 cut(s)	216, 393, 806
BstV1I	GCAGC	9 cut(s)	619, 641, 1109, 1323, 2028, 2039, 2234, 2417, 2609
BstV2I	GAAGAC	1 cut(s)	1420
BstX2I	RGATCY	2 cut(s)	1214, 2049
BstYI	RGATCY	2 cut(s)	1214, 2049
BstZI	CGGCCG	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	697
BtgI	CCRYGG	2 cut(s)	214, 2474
BtgZI	GCGATG	2 cut(s)	735, 2285
BtrI	CACGTC	1 cut(s)	1379
BtsCI	GGATG	7 cut(s)	511, 862, 1171, 1762, 1845, 2276, 2638
BtsI	GCAGTG	2 cut(s)	525, 893
BtsIMutI	CAGTG	8 cut(s)	525, 581, 893, 1179, 1822, 1972, 2039, 2142
BtuMI	TCGCGA	1 cut(s)	393
BveI	ACCTGC	2 cut(s)	769, 1672
Cac8I	GCNNGC	6 cut(s)	244, 766, 1049, 1341, 2386, 2754
CaiI	CAGNNNCTG	2 cut(s)	926, 2030
CfoI	GCGC	1 cut(s)	667
Cfr42I	CCGCGG	1 cut(s)	217
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	6 cut(s)	177, 362, 1875, 1960, 2034, 2676
CviQI	GTAC	6 cut(s)	177, 362, 1875, 1960, 2034, 2676
DpnI	GATC	7 cut(s)	577, 624, 803, 1216, 1950, 2051, 2115
DpnII	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
DraIII	CACNNNGTG	1 cut(s)	651
EaeI	YGGCCR	2 cut(s)	18, 370
EagI	CGGCCG	1 cut(s)	370
Eam1104I	CTCTTC	3 cut(s)	73, 1515, 2542
EarI	CTCTTC	3 cut(s)	73, 1515, 2542
EciI	GGCGGA	2 cut(s)	50, 119
Ecl136II	GAGCTC	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	370
Eco130I	CCWWGG	3 cut(s)	543, 961, 2326
Eco147I	AGGCCT	1 cut(s)	1443
Eco24I	GRGCYC	2 cut(s)	318, 2326
Eco31I	GGTCTC	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	2704
Eco47I	GGWCC	6 cut(s)	923, 1075, 2215, 2239, 2587, 2656
Eco52I	CGGCCG	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	6 cut(s)	780, 1258, 1339, 1555, 1798, 1948
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	2 cut(s)	281, 2764
EcoO109I	RGGNCCY	4 cut(s)	183, 210, 923, 1075
EcoRII	CCWGG	3 cut(s)	919, 2218, 2765
EcoRV	GATATC	1 cut(s)	2704
EcoT14I	CCWWGG	3 cut(s)	543, 961, 2326
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	318, 2326
ErhI	CCWWGG	3 cut(s)	543, 961, 2326
Esp3I	CGTCTC	1 cut(s)	1369
FaqI	GGGAC	4 cut(s)	439, 1061, 2201, 2701
FauI	CCCGC	4 cut(s)	122, 221, 2691, 2726
FbaI	TGATCA	1 cut(s)	1948
FblI	GTMKAC	2 cut(s)	1983, 2391
FokI	GGATG	7 cut(s)	498, 869, 1178, 1769, 1852, 2263, 2645
FriOI	GRGCYC	2 cut(s)	318, 2326
FspBI	CTAG	9 cut(s)	180, 480, 500, 1349, 1725, 2327, 2340, 2457, 2660
GlaI	GCGC	1 cut(s)	666
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	4 cut(s)	960, 1247, 1766, 2130
HaeII	RGCGCY	1 cut(s)	668
HapII	CCGG	4 cut(s)	54, 123, 383, 2193
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	667
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HincII	GTYRAC	3 cut(s)	1307, 1766, 2190
HindII	GTYRAC	3 cut(s)	1307, 1766, 2190
HindIII	AAGCTT	1 cut(s)	1482
HpaII	CCGG	4 cut(s)	54, 123, 383, 2193
HphI	GGTGA	2 cut(s)	2234, 2648
Hpy166II	GTNNAC	7 cut(s)	412, 1307, 1766, 1909, 1984, 2190, 2392
Hpy188III	TCNNGA	7 cut(s)	392, 456, 469, 560, 884, 1034, 2009
Hpy8I	GTNNAC	7 cut(s)	412, 1307, 1766, 1909, 1984, 2190, 2392
Hpy99I	CGWCG	4 cut(s)	224, 227, 230, 398
HpyAV	CCTTC	4 cut(s)	1569, 1822, 2149, 2363
HpyCH4III	ACNGT	7 cut(s)	398, 709, 1304, 1981, 2137, 2680, 2715
HpyCH4IV	ACGT	4 cut(s)	387, 997, 1378, 1853
HpyF10VI	GCNNNNNNNGC	7 cut(s)	123, 335, 344, 626, 904, 1741, 1843
HpySE526I	ACGT	4 cut(s)	387, 997, 1378, 1853
HspAI	GCGC	1 cut(s)	665
KpnI	GGTACC	1 cut(s)	1878
Ksp22I	TGATCA	1 cut(s)	1948
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
LmnI	GCTCC	4 cut(s)	195, 200, 270, 321
Lsp1109I	GCAGC	9 cut(s)	619, 641, 1109, 1323, 2028, 2039, 2234, 2417, 2609
LweI	GCATC	7 cut(s)	325, 607, 1349, 1511, 1731, 1903, 2285
MaeI	CTAG	9 cut(s)	180, 480, 500, 1349, 1725, 2327, 2340, 2457, 2660
MaeII	ACGT	4 cut(s)	387, 997, 1378, 1853
MaeIII	GTNAC	7 cut(s)	83, 641, 1172, 1280, 1727, 1937, 2567
MalI	GATC	7 cut(s)	577, 624, 803, 1216, 1950, 2051, 2115
MbiI	CCGCTC	2 cut(s)	103, 195
MboI	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
MboII	GAAGA	7 cut(s)	60, 786, 1123, 1425, 1502, 1661, 2529
MfeI	CAATTG	4 cut(s)	612, 1497, 1701, 2210
MflI	RGATCY	2 cut(s)	1214, 2049
MhlI	GDGCHC	4 cut(s)	318, 379, 414, 2326
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	5 cut(s)	168, 469, 959, 1242, 2593
Mph1103I	ATGCAT	1 cut(s)	438
MseI	TTAA	8 cut(s)	402, 1206, 1581, 1833, 1857, 2364, 2691, 2779
MslI	CAYNNNNRTG	5 cut(s)	516, 530, 1184, 1944, 1950
MspA1I	CMGCKG	4 cut(s)	216, 632, 1278, 2030
MspCI	CTTAAG	2 cut(s)	401, 1205
MspI	CCGG	4 cut(s)	54, 123, 383, 2193
MspR9I	CCNGG	3 cut(s)	921, 2220, 2767
MunI	CAATTG	4 cut(s)	612, 1497, 1701, 2210
Mva1269I	GAATGC	4 cut(s)	420, 768, 1191, 1343
MvaI	CCWGG	3 cut(s)	921, 2220, 2767
MvnI	CGCG	3 cut(s)	216, 393, 806
MwoI	GCNNNNNNNGC	7 cut(s)	123, 335, 344, 626, 904, 1741, 1843
NdeII	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
NlaIV	GGNNCC	8 cut(s)	185, 212, 1077, 1216, 1876, 2217, 2240, 2734
NmeAIII	GCCGAG	1 cut(s)	348
NmuCI	GTSAC	3 cut(s)	1172, 1727, 1937
NruI	TCGCGA	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	438
NspI	RCATGY	1 cut(s)	919
OliI	CACNNNNGTG	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	1672
PceI	AGGCCT	1 cut(s)	1443
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 300
PctI	GAATGC	4 cut(s)	420, 768, 1191, 1343
PfeI	GAWTC	9 cut(s)	300, 539, 586, 874, 1028, 1037, 1619, 2196, 2616
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	2 cut(s)	923, 1075
Psp124BI	GAGCTC	1 cut(s)	318
Psp5II	RGGWCCY	2 cut(s)	923, 1075
Psp6I	CCWGG	3 cut(s)	919, 2218, 2765
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	3 cut(s)	919, 2218, 2765
PspN4I	GGNNCC	8 cut(s)	185, 212, 1077, 1216, 1876, 2217, 2240, 2734
PspPPI	RGGWCCY	2 cut(s)	923, 1075
PstI	CTGCAG	2 cut(s)	631, 1341
PstNI	CAGNNNCTG	2 cut(s)	926, 2030
PsuI	RGATCY	2 cut(s)	1214, 2049
PvuII	CAGCTG	3 cut(s)	632, 1278, 2030
RruI	TCGCGA	1 cut(s)	393
RsaI	GTAC	6 cut(s)	178, 363, 1876, 1961, 2035, 2677
RsaNI	GTAC	6 cut(s)	177, 362, 1875, 1960, 2034, 2676
RseI	CAYNNNNRTG	5 cut(s)	516, 530, 1184, 1944, 1950
SacI	GAGCTC	1 cut(s)	318
SacII	CCGCGG	1 cut(s)	217
SaqAI	TTAA	8 cut(s)	402, 1206, 1581, 1833, 1857, 2364, 2691, 2779
Sau3AI	GATC	7 cut(s)	575, 622, 801, 1214, 1948, 2049, 2113
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	3 cut(s)	921, 2220, 2767
SduI	GDGCHC	4 cut(s)	318, 379, 414, 2326
SfaNI	GCATC	7 cut(s)	325, 607, 1349, 1511, 1731, 1903, 2285
SfcI	CTRYAG	4 cut(s)	627, 1337, 1437, 2349
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
SinI	GGWCC	6 cut(s)	923, 1075, 2215, 2239, 2587, 2656
SmiMI	CAYNNNNRTG	5 cut(s)	516, 530, 1184, 1944, 1950
SmlI	CTYRAG	3 cut(s)	401, 1205, 2521
SmoI	CTYRAG	3 cut(s)	401, 1205, 2521
SseBI	AGGCCT	1 cut(s)	1443
SspI	AATATT	1 cut(s)	1557
SspMI	CTAG	9 cut(s)	180, 480, 500, 1349, 1725, 2327, 2340, 2457, 2660
SstI	GAGCTC	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	1443
StyD4I	CCNGG	3 cut(s)	919, 2218, 2765
StyI	CCWWGG	3 cut(s)	543, 961, 2326
TaaI	ACNGT	7 cut(s)	398, 709, 1304, 1981, 2137, 2680, 2715
TaiI	ACGT	4 cut(s)	390, 1000, 1381, 1856
TaqI	TCGA	4 cut(s)	982, 1739, 1870, 2320
TaqII	GACCGA	2 cut(s)	686, 2604
TatI	WGTACW	2 cut(s)	361, 1959
TauI	GCSGC	6 cut(s)	219, 249, 420, 2022, 2738, 2752
TfiI	GAWTC	9 cut(s)	300, 539, 586, 874, 1028, 1037, 1619, 2196, 2616
Tru1I	TTAA	8 cut(s)	402, 1206, 1581, 1833, 1857, 2364, 2691, 2779
Tru9I	TTAA	8 cut(s)	402, 1206, 1581, 1833, 1857, 2364, 2691, 2779
TscAI	CASTG	8 cut(s)	532, 588, 900, 1186, 1822, 1972, 2046, 2142
TseFI	GTSAC	3 cut(s)	1172, 1727, 1937
TseI	GCWGC	9 cut(s)	629, 632, 1097, 1336, 2016, 2027, 2247, 2405, 2597
Tsp45I	GTSAC	3 cut(s)	1172, 1727, 1937
TspDTI	ATGAA	9 cut(s)	17, 453, 500, 866, 1626, 1812, 1856, 2166, 2661
TspGWI	ACGGA	5 cut(s)	71, 140, 1769, 2231, 2301
TspRI	CASTG	8 cut(s)	532, 588, 900, 1186, 1822, 1972, 2046, 2142
Vha464I	CTTAAG	2 cut(s)	401, 1205
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	6 cut(s)	923, 1075, 2215, 2239, 2587, 2656
XagI	CCTNNNNNAGG	2 cut(s)	281, 2764
XapI	RAATTY	4 cut(s)	601, 775, 1635, 2004
XceI	RCATGY	1 cut(s)	919
XmaJI	CCTAGG	1 cut(s)	2326
XmiI	GTMKAC	2 cut(s)	1983, 2391
XspI	CTAG	9 cut(s)	180, 480, 500, 1349, 1725, 2327, 2340, 2457, 2660
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.