Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003422.1

Orthogroup ID

OG0002410

Physical Location & Seq

Genomic Coordinates Reverse (-)

18030 .. 24769

Gene Structure 6740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003422.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

atggggaatacttgtgttggacccagcatttctaagaatggcttcttccaatcagtttcggctgcaatgtggcgaacccctttgcctgatgactctcttcatactagtggaggagaaactgccaatgagcagcagcccagggaacccgagtcgcctcttccggtacaagacaagcccccgcaacaagtgatgaccataccaaaacctgaaactgagccgaaacaaccctccaaacccaggaagccgccgcagatgaagagggtccctagtgcagggcttcgtgctggttcagtgttgcaaacaaagacgggaaaaataaaggagttttatagttttgggaggaaattgggacaggggcagtttggggtaacaactctgtgcgtggagaaggccacggggaaagagtatgcgtgcaagtcgattgcaaaaaggaagttgataacagacgatgatgtggaggatgtgaggagggagattcagataatgcatcatctggcaggccaccctaatgttatatctataaagggtgcttatgaggatgctgttgcagttcatgtagttatggaattatgtgcaggaggtgagctctttgataggattatccagcgtggccattatacagaaagaaaggcagctgagctcactaggactatagtcggagttgtagaagcttgccattcattaggagttatgcatcgagaccttaagcccgagaattttctctttgtcagtcaggaagaggatgcacttcttaaaactattgattttggattatctattttcttgaagccaggagaaaagtttactgatgtggttgggagcccatattatgtcgctccagaagtcttaaaaaagcgttatggtccagaagcagatgtttggagcgctggagtgattctttatattttattaagtggggtacctccattttgggctgaaacggagcaaggaatatttgatcaggtcttgcatggtgagctagacttttcatcagatccctggcctagtatctctgacggtgccaaagatttagtaaggagaatgcttgtccgagaccctagaaagcggctgactgcacacgaagttttgtgccacccctgggtgcaagttgatggtgtggctcctgataaggctcttgattctgcagttctaagtcgcttaaagcaattttcagctatgaacaagctgaagaaaatggctcttagggttattgctgagagcttatctgaagaagaaatagctggcctgaaagaaatgttcaagatgatagacaccgacggcagtggccaaatcacttttgaagaacttaaggctggactgaaaaaatttggagctactctcaaggagtcagaaatttatgatctgatgcaagcagcagatgtagataatagcggaaccattgattatggggaatttgttgctgcaacattgcatttaaacaaaattgagagagaagatcatctgtttgcagctttctcctactttgataaggatggaagtggctacattactcaagatgagcttcaactagcttgtgaggattttggcgtagaggatgttcgcctcgaagaaatgataagagaagtcgatcaggataatgatggacgcatagattacaacgacaaaactttctgctgccctagttcggtgatgtattctgcaagactaaaggcggttacttttcttgggatggaggaagatagtttacttgaaagatttaaggctgaaattgatatgctgccggttattgatatggtgtcattttgggttcaggctcatggtgatccaacaagggacgtttatgaggcccttggtgaaagaagtcgttgctgttcttgcgtgatacaattcctttgtatgaagcgtgatgaggttcaacaatgcctttgtacgggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

632

Amino Acids

70.57

Weight (kDa)

5.2

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10660 AT3G10660 AT5G04870
fragaria_vesca	FvH4_6g20840 FvH4_6g20840 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490
malus_domestica	MD02G1257300.v1.1 MD07G1063300.v1.1 MD12G1044400.v1.1 MD14G1043300.v1.1
prunus_persica	Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.7G090800_v2.0.a1 Prupe.7G090800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0332341 RchiOBHm_Chr3g0464211 RchiOBHm_Chr3g0477181
rosa_laevigata	RLG00000023739 RLG00000029678
rosa_multiflora	Rmu_sc0000932.1_g000001 Rmu_sc0003422.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318280 Rroxscaffold_6G00404350 Rroxscaffold_6G00404850
rosa_rugosa	Rorug01G0100000 Rorug03G0158600
rosa_samantha	Rh1CG118000 Rh1DG129100 Rh3AG208900 Rh3CG236600 Rh3DG235400
rosa_wichuraiana	Rw1G010080 Rw3G019050 Rw3G019440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	919
AccB1I	GGYRCC	2 cut(s)	919, 1019
AciI	CCGC	6 cut(s)	179, 245, 248, 1066, 1392, 1673
AclWI	GGATC	2 cut(s)	989, 1778
AcoI	YGGCCR	2 cut(s)	610, 1285
AcsI	RAATTY	4 cut(s)	715, 1325, 1353, 1412
AcuI	CTGAAG	2 cut(s)	1208, 1248
AfaI	GTAC	3 cut(s)	165, 921, 1891
AfeI	AGCGCT	1 cut(s)	886
AfiI	CCNNNNNNNGG	5 cut(s)	237, 272, 1099, 1645, 1891
AflII	CTTAAG	2 cut(s)	704, 1307
AgsI	TTSAA	6 cut(s)	787, 1261, 1301, 1526, 1712, 1877
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	5 cut(s)	137, 236, 790, 998, 1097
Alw21I	GWGCWC	2 cut(s)	588, 642
Alw26I	GTCTC	2 cut(s)	693, 1047
AlwI	GGATC	2 cut(s)	989, 1778
Ama87I	CYCGRG	2 cut(s)	146, 710
Aor51HI	AGCGCT	1 cut(s)	886
AoxI	GGCC	7 cut(s)	390, 499, 610, 1001, 1243, 1285, 1806
ApeKI	GCWGC	9 cut(s)	62, 130, 133, 632, 1373, 1421, 1469, 1635, 1738
ApoI	RAATTY	4 cut(s)	715, 1325, 1353, 1412
Asp700I	GAANNNNTTC	1 cut(s)	41
Asp718I	GGTACC	1 cut(s)	919
AspLEI	GCGC	1 cut(s)	887
AspS9I	GGNCC	4 cut(s)	20, 262, 863, 1807
AsuHPI	GGTGA	5 cut(s)	593, 986, 1660, 1793, 1826
AvaI	CYCGRG	2 cut(s)	146, 710
AvaII	GGWCC	3 cut(s)	20, 262, 863
BalI	TGGCCA	2 cut(s)	612, 1287
BanI	GGYRCC	2 cut(s)	919, 1019
BanII	GRGCYC	3 cut(s)	588, 642, 824
BarI	GAAGNNNNNNTAC	2 cut(s)	1689, 1721
Bbv12I	GWGCWC	2 cut(s)	588, 642
BbvI	GCAGC	9 cut(s)	49, 142, 145, 644, 1385, 1408, 1481, 1622, 1725
BccI	CCATC	4 cut(s)	1106, 1487, 1595, 1684
BceAI	ACGGC	1 cut(s)	1294
BciT130I	CCWGG	5 cut(s)	139, 238, 792, 1000, 1099
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	693, 1047
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	8 cut(s)	105, 267, 645, 980, 1005, 1059, 1529, 1641
BfmI	CTRYAG	2 cut(s)	651, 1143
BfoI	RGCGCY	1 cut(s)	888
BfrI	CTTAAG	2 cut(s)	704, 1307
BlpI	GCTNAGC	1 cut(s)	636
Bme1390I	CCNGG	5 cut(s)	139, 238, 792, 1000, 1099
Bme18I	GGWCC	3 cut(s)	20, 262, 863
BmeT110I	CYCGRG	2 cut(s)	146, 710
BmgT120I	GGNCC	4 cut(s)	20, 262, 863, 1807
BmiI	GGNNCC	9 cut(s)	22, 144, 263, 264, 821, 921, 1021, 1122, 1396
BmrFI	CCNGG	5 cut(s)	139, 238, 792, 1000, 1099
BmsI	GCATC	5 cut(s)	496, 529, 703, 733, 1356
BoxI	GACNNNNGTC	1 cut(s)	653
BplI	GAGNNNNNCTC	4 cut(s)	570, 602, 1323, 1355
BpmI	CTGGAG	2 cut(s)	822, 909
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	1325, 1497
BsaI	GGTCTC	2 cut(s)	693, 1047
BsaJI	CCNNGG	8 cut(s)	137, 138, 236, 393, 998, 1097, 1098, 1810
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	5 cut(s)	237, 272, 1099, 1645, 1891
Bse118I	RCCGGY	1 cut(s)	1741
Bse3DI	GCAATG	2 cut(s)	72, 1427
BseBI	CCWGG	5 cut(s)	139, 238, 792, 1000, 1099
BseDI	CCNNGG	8 cut(s)	137, 138, 236, 393, 998, 1097, 1098, 1810
BseGI	GGATG	6 cut(s)	466, 544, 748, 1498, 1561, 1695
BseLI	CCNNNNNNNGG	5 cut(s)	237, 272, 1099, 1645, 1891
BseMI	GCAATG	2 cut(s)	72, 1427
BseMII	CTCAG	3 cut(s)	204, 627, 1206
BseRI	GAGGAG	2 cut(s)	126, 481
BseXI	GCAGC	9 cut(s)	49, 142, 145, 644, 1385, 1408, 1481, 1622, 1725
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	3 cut(s)	291, 594, 1059
BshFI	GGCC	7 cut(s)	392, 501, 612, 1003, 1245, 1287, 1808
BshNI	GGYRCC	2 cut(s)	919, 1019
BsiHKAI	GWGCWC	2 cut(s)	588, 642
BsiHKCI	CYCGRG	2 cut(s)	146, 710
BsiSI	CCGG	2 cut(s)	161, 1742
BslFI	GGGAC	3 cut(s)	248, 363, 1808
BslI	CCNNNNNNNGG	5 cut(s)	237, 272, 1099, 1645, 1891
BsmAI	GTCTC	2 cut(s)	693, 1047
BsmFI	GGGAC	3 cut(s)	248, 363, 1808
BsmI	GAATGC	1 cut(s)	1047
BsnI	GGCC	7 cut(s)	392, 501, 612, 1003, 1245, 1287, 1808
Bso31I	GGTCTC	2 cut(s)	693, 1047
BsoBI	CYCGRG	2 cut(s)	146, 710
Bsp1286I	GDGCHC	3 cut(s)	588, 642, 824
Bsp143I	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
Bsp1720I	GCTNAGC	1 cut(s)	636
BspACI	CCGC	6 cut(s)	179, 245, 248, 1066, 1392, 1673
BspANI	GGCC	7 cut(s)	392, 501, 612, 1003, 1245, 1287, 1808
BspCNI	CTCAG	3 cut(s)	205, 628, 1207
BspLI	GGNNCC	9 cut(s)	22, 144, 263, 264, 821, 921, 1021, 1122, 1396
BspMAI	CTGCAG	1 cut(s)	1147
BspPI	GGATC	2 cut(s)	989, 1778
BspT107I	GGYRCC	2 cut(s)	919, 1019
BspTI	CTTAAG	2 cut(s)	704, 1307
BspTNI	GGTCTC	2 cut(s)	693, 1047
BsrDI	GCAATG	2 cut(s)	72, 1427
BsrFI	RCCGGY	1 cut(s)	1741
BssAI	RCCGGY	1 cut(s)	1741
BssECI	CCNNGG	8 cut(s)	137, 138, 236, 393, 998, 1097, 1098, 1810
BssMI	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
BssT1I	CCWWGG	1 cut(s)	1810
Bst2UI	CCWGG	5 cut(s)	139, 238, 792, 1000, 1099
Bst4CI	ACNGT	1 cut(s)	1019
Bst6I	CTCTTC	4 cut(s)	102, 162, 251, 732
BstAFI	CTTAAG	2 cut(s)	704, 1307
BstC8I	GCNNGC	5 cut(s)	412, 499, 673, 1243, 1371
BstDEI	CTNAG	6 cut(s)	33, 213, 636, 1151, 1202, 1215
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	6 cut(s)	466, 544, 748, 1498, 1561, 1695
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	1 cut(s)	887
BstKTI	GATC	6 cut(s)	961, 997, 1363, 1459, 1591, 1786
BstMAI	GTCTC	2 cut(s)	693, 1047
BstMBI	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
BstMWI	GCNNNNNNNGC	2 cut(s)	976, 1836
BstNI	CCWGG	5 cut(s)	139, 238, 792, 1000, 1099
BstPAI	GACNNNNGTC	1 cut(s)	653
BstSCI	CCNGG	5 cut(s)	137, 236, 790, 998, 1097
BstSFI	CTRYAG	2 cut(s)	651, 1143
BstV1I	GCAGC	9 cut(s)	49, 142, 145, 644, 1385, 1408, 1481, 1622, 1725
BstX2I	RGATCY	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	994
BsuRI	GGCC	7 cut(s)	392, 501, 612, 1003, 1245, 1287, 1808
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	6 cut(s)	466, 544, 748, 1498, 1561, 1695
BtsI	GCAGTG	1 cut(s)	1288
BtsIMutI	CAGTG	2 cut(s)	297, 1288
Cac8I	GCNNGC	5 cut(s)	412, 499, 673, 1243, 1371
CfoI	GCGC	1 cut(s)	887
Cfr10I	RCCGGY	1 cut(s)	1741
Cfr13I	GGNCC	4 cut(s)	20, 262, 863, 1807
CseI	GACGC	1 cut(s)	1614
Csp6I	GTAC	3 cut(s)	164, 920, 1890
CviAII	CATG	3 cut(s)	554, 971, 1778
CviQI	GTAC	3 cut(s)	164, 920, 1890
DdeI	CTNAG	6 cut(s)	33, 213, 636, 1151, 1202, 1215
DpnI	GATC	6 cut(s)	960, 996, 1362, 1458, 1590, 1785
DpnII	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
DraI	TTTAAA	1 cut(s)	1437
EaeI	YGGCCR	2 cut(s)	610, 1285
Eam1104I	CTCTTC	4 cut(s)	102, 162, 251, 732
EarI	CTCTTC	4 cut(s)	102, 162, 251, 732
Ecl136II	GAGCTC	2 cut(s)	586, 640
Eco130I	CCWWGG	1 cut(s)	1810
Eco24I	GRGCYC	3 cut(s)	588, 642, 824
Eco31I	GGTCTC	2 cut(s)	693, 1047
Eco47I	GGWCC	3 cut(s)	20, 262, 863
Eco47III	AGCGCT	1 cut(s)	886
Eco53kI	GAGCTC	2 cut(s)	586, 640
Eco57I	CTGAAG	2 cut(s)	1208, 1248
Eco88I	CYCGRG	2 cut(s)	146, 710
EcoICRI	GAGCTC	2 cut(s)	586, 640
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	2 cut(s)	262, 1807
EcoRII	CCWGG	5 cut(s)	137, 236, 790, 998, 1097
EcoT14I	CCWWGG	1 cut(s)	1810
EcoT22I	ATGCAT	2 cut(s)	489, 696
EcoT38I	GRGCYC	3 cut(s)	588, 642, 824
ErhI	CCWWGG	1 cut(s)	1810
FaeI	CATG	3 cut(s)	557, 974, 1781
FalI	AAGNNNNNCTT	4 cut(s)	26, 58, 1506, 1538
FaqI	GGGAC	3 cut(s)	248, 363, 1808
FatI	CATG	3 cut(s)	553, 970, 1777
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	958
FokI	GGATG	6 cut(s)	473, 551, 755, 1505, 1568, 1702
FriOI	GRGCYC	3 cut(s)	588, 642, 824
FspBI	CTAG	8 cut(s)	105, 267, 645, 980, 1005, 1059, 1529, 1641
GlaI	GCGC	1 cut(s)	886
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	2 cut(s)	822, 909
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	7 cut(s)	392, 501, 612, 1003, 1245, 1287, 1808
HapII	CCGG	2 cut(s)	161, 1742
HgaI	GACGC	1 cut(s)	1614
HhaI	GCGC	1 cut(s)	887
Hin1II	CATG	3 cut(s)	557, 974, 1781
Hin6I	GCGC	1 cut(s)	885
HinP1I	GCGC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	6 cut(s)	92, 149, 475, 895, 1139, 1346
HpaII	CCGG	2 cut(s)	161, 1742
HphI	GGTGA	5 cut(s)	593, 986, 1660, 1793, 1826
Hpy166II	GTNNAC	2 cut(s)	804, 1706
Hpy188I	TCNGA	8 cut(s)	480, 659, 994, 1015, 1052, 1228, 1351, 1365
Hpy8I	GTNNAC	2 cut(s)	804, 1706
Hpy99I	CGWCG	1 cut(s)	1280
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	1019
HpyCH4IV	ACGT	1 cut(s)	1797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	976, 1836
HpyF3I	CTNAG	6 cut(s)	33, 213, 636, 1151, 1202, 1215
HpySE526I	ACGT	1 cut(s)	1797
Hsp92II	CATG	3 cut(s)	557, 974, 1781
HspAI	GCGC	1 cut(s)	885
KflI	GGGWCCC	1 cut(s)	262
KpnI	GGTACC	1 cut(s)	923
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
LmnI	GCTCC	6 cut(s)	819, 841, 882, 943, 1126, 1331
Lsp1109I	GCAGC	9 cut(s)	49, 142, 145, 644, 1385, 1408, 1481, 1622, 1725
LweI	GCATC	5 cut(s)	496, 529, 703, 733, 1356
MaeI	CTAG	8 cut(s)	105, 267, 645, 980, 1005, 1059, 1529, 1641
MaeII	ACGT	1 cut(s)	1797
MaeIII	GTNAC	2 cut(s)	367, 1675
MalI	GATC	6 cut(s)	960, 996, 1362, 1458, 1590, 1785
MboI	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	3 cut(s)	588, 642, 824
MlsI	TGGCCA	2 cut(s)	612, 1287
MluNI	TGGCCA	2 cut(s)	612, 1287
MlyI	GAGTC	3 cut(s)	86, 158, 1355
MmeI	TCCRAC	2 cut(s)	637, 1811
Mox20I	TGGCCA	2 cut(s)	612, 1287
Mph1103I	ATGCAT	2 cut(s)	489, 696
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	612, 1287
MseI	TTAA	8 cut(s)	705, 753, 848, 911, 1160, 1308, 1436, 1719
MslI	CAYNNNNRTG	2 cut(s)	105, 507
Msp20I	TGGCCA	2 cut(s)	612, 1287
MspA1I	CMGCKG	1 cut(s)	635
MspCI	CTTAAG	2 cut(s)	704, 1307
MspI	CCGG	2 cut(s)	161, 1742
MspR9I	CCNGG	5 cut(s)	139, 238, 792, 1000, 1099
Mva1269I	GAATGC	1 cut(s)	1047
MvaI	CCWGG	5 cut(s)	139, 238, 792, 1000, 1099
MwoI	GCNNNNNNNGC	2 cut(s)	976, 1836
NdeII	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
NlaIII	CATG	3 cut(s)	557, 974, 1781
NlaIV	GGNNCC	9 cut(s)	22, 144, 263, 264, 821, 921, 1021, 1122, 1396
NsiI	ATGCAT	2 cut(s)	489, 696
PasI	CCCWGGG	2 cut(s)	138, 1098
PctI	GAATGC	1 cut(s)	1047
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	475, 895, 1139
PleI	GAGTC	3 cut(s)	86, 157, 1354
PpsI	GAGTC	3 cut(s)	86, 157, 1354
PpuMI	RGGWCCY	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	653
Psp124BI	GAGCTC	2 cut(s)	588, 642
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	5 cut(s)	137, 236, 790, 998, 1097
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	5 cut(s)	137, 236, 790, 998, 1097
PspN4I	GGNNCC	9 cut(s)	22, 144, 263, 264, 821, 921, 1021, 1122, 1396
PspPI	GGNCC	4 cut(s)	20, 262, 863, 1807
PspPPI	RGGWCCY	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	1542, 1574
PstI	CTGCAG	1 cut(s)	1147
PsuI	RGATCY	1 cut(s)	994
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	3 cut(s)	165, 921, 1891
RsaNI	GTAC	3 cut(s)	164, 920, 1890
RseI	CAYNNNNRTG	2 cut(s)	105, 507
SacI	GAGCTC	2 cut(s)	588, 642
SaqAI	TTAA	8 cut(s)	705, 753, 848, 911, 1160, 1308, 1436, 1719
Sau3AI	GATC	6 cut(s)	958, 994, 1360, 1456, 1588, 1783
Sau96I	GGNCC	4 cut(s)	20, 262, 863, 1807
SchI	GAGTC	3 cut(s)	86, 158, 1355
ScrFI	CCNGG	5 cut(s)	139, 238, 792, 1000, 1099
SduI	GDGCHC	3 cut(s)	588, 642, 824
SfaNI	GCATC	5 cut(s)	496, 529, 703, 733, 1356
SfcI	CTRYAG	2 cut(s)	651, 1143
SinI	GGWCC	3 cut(s)	20, 262, 863
SmiMI	CAYNNNNRTG	2 cut(s)	105, 507
SmlI	CTYRAG	4 cut(s)	704, 1307, 1340, 1512
SmoI	CTYRAG	4 cut(s)	704, 1307, 1340, 1512
SpeI	ACTAGT	1 cut(s)	104
SsiI	CCGC	6 cut(s)	179, 245, 248, 1066, 1392, 1673
SspI	AATATT	1 cut(s)	954
SspMI	CTAG	8 cut(s)	105, 267, 645, 980, 1005, 1059, 1529, 1641
SstI	GAGCTC	2 cut(s)	588, 642
StyD4I	CCNGG	5 cut(s)	137, 236, 790, 998, 1097
StyI	CCWWGG	1 cut(s)	1810
TaaI	ACNGT	1 cut(s)	1019
TaiI	ACGT	1 cut(s)	1800
TaqI	TCGA	4 cut(s)	419, 697, 1566, 1587
TauI	GCSGC	3 cut(s)	247, 250, 1069
TfiI	GAWTC	3 cut(s)	475, 895, 1139
Tru1I	TTAA	8 cut(s)	705, 753, 848, 911, 1160, 1308, 1436, 1719
Tru9I	TTAA	8 cut(s)	705, 753, 848, 911, 1160, 1308, 1436, 1719
TscAI	CASTG	2 cut(s)	297, 1288
TseI	GCWGC	9 cut(s)	62, 130, 133, 632, 1373, 1421, 1469, 1635, 1738
TspDTI	ATGAA	7 cut(s)	89, 269, 542, 669, 978, 1193, 1874
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	2 cut(s)	297, 1288
Vha464I	CTTAAG	2 cut(s)	704, 1307
VpaK11BI	GGWCC	3 cut(s)	20, 262, 863
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	4 cut(s)	715, 1325, 1353, 1412
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	8 cut(s)	105, 267, 645, 980, 1005, 1059, 1529, 1641
Zsp2I	ATGCAT	2 cut(s)	489, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.