AT3G10660

calmodulin-domain protein kinase cdpk isoform 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3331064 .. 3334986
3923 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10660.1

Sequence Viewer

Length: 1941 bp
ATGGGTAATGCTTGCGTTGGACCAAACATTTCTGGAAATGGTTTCTTGCAAACTGTTACGGCTGCAATGTGGAGGCCACGGATCGGAGCTGAGCAAGCTTCTTCTTCTTCCCATGGTAATGGACAAGTTTCTAAAGAAGCAGCTTCAGAACCAGCTACTGATCAAGTCCAGAATAAACCCCCTGAGCCTATCACAATGCCAAGCTCAAAGACCAATCCCGAAACTAAACTGAAACCCGATCTAGAGATCCAACCTGAAGAAAAGAAGGAGAAAGTTCTTGCAGAAGAAACCAAGCAGAAAGTTGTTCCTGAAGAAAGTAAGCAGGAAGTTCCTCCTGAAGAAAGTAAGCGGGAAGTTGTTGTGCAGCCGGAGTCAGCAAAACCAGAAACAAAGTCTGAATCCAAGCCAGAGACAACAAAACCAGAAACAACGTCTGAAACCAAGCCAGAGACGAAAGCTGAACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGAGTCAGTGTTGCAGAGGAAAACTGAAAACTTTAAGGAGTTCTATTCATTAGGGAGGAAACTTGGACAAGGGCAATTTGGGACGACGTTTTTATGCCTTGAGAAAGGTACTGGGAACGAATATGCGTGCAAGTCGATTTCCAAGAGGAAGCTTTTGACTGATGAGGATGTTGAAGATGTGAGAAGAGAGATTCAGATAATGCATCACTTGGCTGGTCATCCGAATGTTATATCTATTAAAGGTGCTTATGAGGATGTTGTTGCGGTACATCTTGTGATGGAGTTGTGTTCGGGTGGCGAGCTTTTTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTGCGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCGGGACCTCAAGCCAGAGAATTTTCTATTTGTTAGTAGAGAGGAAGATTCCCTGTTGAAAACGATCGACTTTGGACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTCCGTATTATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGAGTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGAAACCGAACAAGGTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCCATGGCCAAGCATCTCTGAAAGCGCGAAAGACTTGGTAAGGAAAATGCTTGTTCGAGACCCCAAGCGAAGACTAACCGCACATCAAGTATTATGTCATCCATGGGTACAGATTGACGGTGTGGCTCCAGATAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGAACAAGTTCAAGAAAATGGCTCTTAGAGTCATAGCTGAGAGCTTATCTGAAGAAGAAATAGCCGGTTTAAAACAAATGTTCAAGATGATAGACGCAGACAATAGTGGTCAGATCACTTTTGAAGAACTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAGATTCTTGATCTAATGCAAGCTGCTGATGTGGACAATAGCGGAACGATAGACTACAAAGAGTTCATAGCCGCCACATTGCATCTAAACAAAATAGAGAGAGAGGACCATTTGTTCGCCGCCTTCTCTTACTTTGACAAGGACGAGAGTGGCTTTATCACCCCGGACGAGCTTCAACAAGCTTGCGAAGAGTTTGGTGTTGAAGATGCCCGCATAGAAGAAATGATGCGCGATGTTGATCAAGACAAGGATGGACGAATAGACTACAACGAGTTTGTGGCAATGATGCAGAAAGGGAGCATAATGGGAGGACCTGTGAAGATGGGTTTAGAGAACAGCATTAGCATTTCTCTGAAACATTAG

Protein Analysis

646

Amino Acids

72.25

Weight (kDa)

5.3

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 186 - 444 2.4e-77 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 188 - 438 4.4e-25 Protein tyrosine and serine/threonine kinase
EF-hand_1 PF00036 492 - 518 5.5e-08 EF hand domain
EF-hand_7 PF13499 492 - 551 5.3e-14 EF-hand domain pair
EF-hand_6 PF13405 492 - 520 2.6e-06 EF-hand domain
EF-hand_5 PF13202 492 - 514 6.2e-06 EF hand
EF-hand_8 PF13833 504 - 552 1.5e-08 EF-hand domain pair
EF-hand_7 PF13499 561 - 623 2.4e-15 EF-hand domain pair
EF-hand_6 PF13405 565 - 592 8.6e-06 EF-hand domain
EF-hand_1 PF00036 598 - 624 3.2e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1180
AccB1I GGYRCC 1 cut(s) 1559
AccII CGCG 2 cut(s) 1250, 1809
AciI CCGC 8 cut(s) 349, 776, 1143, 1302, 1620, 1650, 1698, 1789
AclWI GGATC 3 cut(s) 89, 241, 1217
AcoI YGGCCR 1 cut(s) 1229
AcsI RAATTY 1 cut(s) 943
AcuI CTGAAG 5 cut(s) 129, 276, 330, 357, 1476
AfaI GTAC 3 cut(s) 622, 780, 1332
AfiI CCNNNNNNNGG 3 cut(s) 83, 501, 885
AgsI TTSAA 8 cut(s) 686, 833, 982, 1417, 1489, 1529, 1754, 1781
AloI GAACNNNNNNTCC 2 cut(s) 1676, 1708
Alw26I GTCTC 3 cut(s) 404, 443, 1275
AlwI GGATC 3 cut(s) 89, 241, 1217
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 3 cut(s) 74, 1161, 1229
ApeKI GCWGC 5 cut(s) 62, 140, 364, 860, 1601
ApoI RAATTY 1 cut(s) 943
ArsI GACNNNNNNTTYG 2 cut(s) 1676, 1708
Asp700I GAANNNNTTC 1 cut(s) 1412
AspLEI GCGC 2 cut(s) 1250, 1809
AspS9I GGNCC 7 cut(s) 20, 928, 1091, 1161, 1192, 1684, 1889
AsuC2I CCSGG 1 cut(s) 1742
AsuHPI GGTGA 1 cut(s) 1729
AvaII GGWCC 6 cut(s) 20, 928, 1091, 1192, 1684, 1889
BalI TGGCCA 1 cut(s) 1231
BanI GGYRCC 1 cut(s) 1559
BbsI GAAGAC 1 cut(s) 1300
BbvI GCAGC 5 cut(s) 49, 152, 376, 847, 1588
BccI CCATC 3 cut(s) 784, 1823, 1894
BceAI ACGGC 2 cut(s) 75, 1368
BclI TGATCA 2 cut(s) 160, 1816
BcnI CCSGG 1 cut(s) 1742
BcoDI GTCTC 3 cut(s) 404, 443, 1275
BfaI CTAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 1180
BglII AGATCT 1 cut(s) 1204
BisI GCNGC 7 cut(s) 63, 141, 365, 861, 1602, 1650, 1698
BlpI GCTNAGC 2 cut(s) 90, 864
BlsI GCNGC 7 cut(s) 64, 142, 366, 862, 1603, 1651, 1699
Bme1390I CCNGG 1 cut(s) 1742
Bme18I GGWCC 6 cut(s) 20, 928, 1091, 1192, 1684, 1889
BmgT120I GGNCC 7 cut(s) 20, 928, 1091, 1161, 1192, 1684, 1889
BmiI GGNNCC 3 cut(s) 929, 1350, 1561
BmrFI CCNGG 1 cut(s) 1742
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 7 cut(s) 724, 931, 1245, 1669, 1774, 1794, 1854
BmuI ACTGGG 1 cut(s) 633
BpiI GAAGAC 1 cut(s) 1300
BpmI CTGGAG 2 cut(s) 1050, 1335
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 2 cut(s) 90, 864
BpuEI CTTGAG 2 cut(s) 632, 917
BpuMI CCSGG 1 cut(s) 1742
BsaBI GATNNNNATC 1 cut(s) 1815
BsaI GGTCTC 1 cut(s) 1275
BsaJI CCNNGG 5 cut(s) 77, 112, 1226, 1325, 1740
BsaXI ACNNNNNCTCC 4 cut(s) 1102, 1132, 1878, 1908
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 501, 885
Bse118I RCCGGY 1 cut(s) 1469
Bse1I ACTGG 2 cut(s) 495, 628
Bse3DI GCAATG 4 cut(s) 72, 1410, 1655, 1866
Bse8I GATNNNNATC 1 cut(s) 1815
BseDI CCNNGG 5 cut(s) 77, 112, 1226, 1325, 1740
BseGI GGATG 5 cut(s) 685, 730, 772, 1321, 1834
BseJI GATNNNNATC 1 cut(s) 1815
BseLI CCNNNNNNNGG 3 cut(s) 83, 501, 885
BseMI GCAATG 4 cut(s) 72, 1410, 1655, 1866
BseMII CTCAG 8 cut(s) 81, 174, 479, 504, 840, 855, 1370, 1434
BseNI ACTGG 2 cut(s) 495, 628
BseRI GAGGAG 1 cut(s) 499
BseXI GCAGC 5 cut(s) 49, 152, 376, 847, 1588
BsgI GTGCAG 2 cut(s) 383, 519
Bsh1236I CGCG 2 cut(s) 1250, 1809
Bsh1285I CGRYCG 1 cut(s) 990
BshFI GGCC 3 cut(s) 76, 1163, 1231
BshNI GGYRCC 1 cut(s) 1559
BsiEI CGRYCG 1 cut(s) 990
BsiSI CCGG 3 cut(s) 368, 1470, 1742
BslFI GGGAC 2 cut(s) 607, 941
BslI CCNNNNNNNGG 3 cut(s) 83, 501, 885
BsmAI GTCTC 3 cut(s) 404, 443, 1275
BsmBI CGTCTC 1 cut(s) 443
BsmFI GGGAC 2 cut(s) 607, 941
BsnI GGCC 3 cut(s) 76, 1163, 1231
Bso31I GGTCTC 1 cut(s) 1275
Bsp1720I GCTNAGC 2 cut(s) 90, 864
Bsp19I CCATGG 3 cut(s) 112, 1226, 1325
BspACI CCGC 8 cut(s) 349, 776, 1143, 1302, 1620, 1650, 1698, 1789
BspANI GGCC 3 cut(s) 76, 1163, 1231
BspCNI CTCAG 8 cut(s) 82, 175, 478, 505, 841, 856, 1371, 1435
BspFNI CGCG 2 cut(s) 1250, 1809
BspLI GGNNCC 3 cut(s) 929, 1350, 1561
BspMI ACCTGC 1 cut(s) 1180
BspPI GGATC 3 cut(s) 89, 241, 1217
BspT107I GGYRCC 1 cut(s) 1559
BspTNI GGTCTC 1 cut(s) 1275
BsrDI GCAATG 4 cut(s) 72, 1410, 1655, 1866
BsrFI RCCGGY 1 cut(s) 1469
BsrI ACTGG 2 cut(s) 495, 628
BssAI RCCGGY 1 cut(s) 1469
BssECI CCNNGG 5 cut(s) 77, 112, 1226, 1325, 1740
BssT1I CCWWGG 3 cut(s) 112, 1226, 1325
Bst4CI ACNGT 2 cut(s) 55, 1343
Bst6I CTCTTC 2 cut(s) 691, 1761
BstC8I GCNNGC 8 cut(s) 13, 96, 640, 812, 870, 1599, 1762, 1789
BstDSI CCRYGG 4 cut(s) 77, 112, 1226, 1325
BstF5I GGATG 5 cut(s) 685, 730, 772, 1321, 1834
BstFNI CGCG 2 cut(s) 1250, 1809
BstHHI GCGC 2 cut(s) 1250, 1809
BstMAI GTCTC 3 cut(s) 404, 443, 1275
BstMCI CGRYCG 1 cut(s) 990
BstMWI GCNNNNNNNGC 2 cut(s) 95, 869
BstSCI CCNGG 1 cut(s) 1740
BstUI CGCG 2 cut(s) 1250, 1809
BstV1I GCAGC 5 cut(s) 49, 152, 376, 847, 1588
BstV2I GAAGAC 1 cut(s) 1300
BstX2I RGATCY 2 cut(s) 246, 1204
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 2 cut(s) 246, 1204
BsuRI GGCC 3 cut(s) 76, 1163, 1231
BtgI CCRYGG 4 cut(s) 77, 112, 1226, 1325
BtgZI GCGATG 1 cut(s) 1824
BtsCI GGATG 5 cut(s) 685, 730, 772, 1321, 1834
BtsIMutI CAGTG 3 cut(s) 502, 525, 846
BveI ACCTGC 1 cut(s) 1180
Cac8I GCNNGC 8 cut(s) 13, 96, 640, 812, 870, 1599, 1762, 1789
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 2 cut(s) 1250, 1809
Cfr10I RCCGGY 1 cut(s) 1469
Cfr13I GGNCC 7 cut(s) 20, 928, 1091, 1161, 1192, 1684, 1889
CseI GACGC 1 cut(s) 1508
Csp6I GTAC 3 cut(s) 621, 779, 1331
CviAII CATG 4 cut(s) 113, 1199, 1227, 1326
CviQI GTAC 3 cut(s) 621, 779, 1331
DraI TTTAAA 1 cut(s) 1476
EaeI YGGCCR 1 cut(s) 1229
Eam1104I CTCTTC 2 cut(s) 691, 1761
EarI CTCTTC 2 cut(s) 691, 1761
Eco130I CCWWGG 3 cut(s) 112, 1226, 1325
Eco31I GGTCTC 1 cut(s) 1275
Eco47I GGWCC 6 cut(s) 20, 928, 1091, 1192, 1684, 1889
Eco57I CTGAAG 5 cut(s) 129, 276, 330, 357, 1476
EcoO109I RGGNCCY 3 cut(s) 928, 1192, 1889
EcoT14I CCWWGG 3 cut(s) 112, 1226, 1325
EcoT22I ATGCAT 2 cut(s) 717, 924
ErhI CCWWGG 3 cut(s) 112, 1226, 1325
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 4 cut(s) 116, 1202, 1230, 1329
FaqI GGGAC 2 cut(s) 607, 941
FatI CATG 4 cut(s) 112, 1198, 1226, 1325
FauI CCCGC 2 cut(s) 342, 1796
FauNDI CATATG 1 cut(s) 480
FbaI TGATCA 2 cut(s) 160, 1816
Fnu4HI GCNGC 7 cut(s) 63, 141, 365, 861, 1602, 1650, 1698
FokI GGATG 5 cut(s) 692, 717, 779, 1308, 1841
Fsp4HI GCNGC 7 cut(s) 63, 141, 365, 861, 1602, 1650, 1698
FspBI CTAG 1 cut(s) 242
GlaI GCGC 2 cut(s) 1249, 1808
GluI GCNGC 7 cut(s) 63, 141, 365, 861, 1602, 1650, 1698
GsuI CTGGAG 2 cut(s) 1050, 1335
HaeIII GGCC 3 cut(s) 76, 1163, 1231
HapII CCGG 3 cut(s) 368, 1470, 1742
HgaI GACGC 1 cut(s) 1508
HhaI GCGC 2 cut(s) 1250, 1809
Hin1II CATG 4 cut(s) 116, 1202, 1230, 1329
Hin6I GCGC 2 cut(s) 1248, 1807
HinP1I GCGC 2 cut(s) 1248, 1807
HindIII AAGCTT 3 cut(s) 96, 662, 1758
HpaII CCGG 3 cut(s) 368, 1470, 1742
HphI GGTGA 1 cut(s) 1729
Hpy166II GTNNAC 3 cut(s) 839, 1129, 1612
Hpy8I GTNNAC 3 cut(s) 839, 1129, 1612
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 3 cut(s) 259, 1205, 1711
HpyCH4III ACNGT 2 cut(s) 55, 1343
HpyCH4IV ACGT 3 cut(s) 431, 599, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 869
HpySE526I ACGT 3 cut(s) 431, 599, 835
Hsp92II CATG 4 cut(s) 116, 1202, 1230, 1329
HspAI GCGC 2 cut(s) 1248, 1807
Ksp22I TGATCA 2 cut(s) 160, 1816
LmnI GCTCC 4 cut(s) 86, 1069, 1354, 1875
Lsp1109I GCAGC 5 cut(s) 49, 152, 376, 847, 1588
LweI GCATC 7 cut(s) 724, 931, 1245, 1669, 1774, 1794, 1854
MaeI CTAG 1 cut(s) 242
MaeII ACGT 3 cut(s) 431, 599, 835
MaeIII GTNAC 2 cut(s) 55, 902
MflI RGATCY 2 cut(s) 246, 1204
MlsI TGGCCA 1 cut(s) 1231
MluCI AATT 4 cut(s) 587, 825, 943, 1394
MluNI TGGCCA 1 cut(s) 1231
MlyI GAGTC 6 cut(s) 380, 524, 993, 1361, 1443, 1583
MmeI TCCRAC 1 cut(s) 274
Mox20I TGGCCA 1 cut(s) 1231
Mph1103I ATGCAT 2 cut(s) 717, 924
MroXI GAANNNNTTC 1 cut(s) 1412
MscI TGGCCA 1 cut(s) 1231
MseI TTAA 5 cut(s) 546, 750, 1014, 1139, 1475
MslI CAYNNNNRTG 2 cut(s) 117, 735
Msp20I TGGCCA 1 cut(s) 1231
MspI CCGG 3 cut(s) 368, 1470, 1742
MspR9I CCNGG 1 cut(s) 1742
MvnI CGCG 2 cut(s) 1250, 1809
MwoI GCNNNNNNNGC 2 cut(s) 95, 869
NciI CCSGG 1 cut(s) 1742
NcoI CCATGG 3 cut(s) 112, 1226, 1325
NdeI CATATG 1 cut(s) 480
NlaIII CATG 4 cut(s) 116, 1202, 1230, 1329
NlaIV GGNNCC 3 cut(s) 929, 1350, 1561
NmuCI GTSAC 1 cut(s) 902
NsiI ATGCAT 2 cut(s) 717, 924
PdmI GAANNNNTTC 1 cut(s) 1412
PfeI GAWTC 5 cut(s) 398, 703, 971, 1097, 1582
PkrI GCNGC 7 cut(s) 64, 142, 366, 862, 1603, 1651, 1699
Ple19I CGATCG 1 cut(s) 990
PleI GAGTC 6 cut(s) 379, 523, 993, 1361, 1442, 1582
PpsI GAGTC 6 cut(s) 379, 523, 993, 1361, 1442, 1582
PpuMI RGGWCCY 3 cut(s) 928, 1192, 1889
Psp5II RGGWCCY 3 cut(s) 928, 1192, 1889
PspN4I GGNNCC 3 cut(s) 929, 1350, 1561
PspPI GGNCC 7 cut(s) 20, 928, 1091, 1161, 1192, 1684, 1889
PspPPI RGGWCCY 3 cut(s) 928, 1192, 1889
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 246, 1204
PvuI CGATCG 1 cut(s) 990
RsaI GTAC 3 cut(s) 622, 780, 1332
RsaNI GTAC 3 cut(s) 621, 779, 1331
RseI CAYNNNNRTG 2 cut(s) 117, 735
SaqAI TTAA 5 cut(s) 546, 750, 1014, 1139, 1475
SatI GCNGC 7 cut(s) 63, 141, 365, 861, 1602, 1650, 1698
Sau96I GGNCC 7 cut(s) 20, 928, 1091, 1161, 1192, 1684, 1889
SchI GAGTC 6 cut(s) 380, 524, 993, 1361, 1443, 1583
ScrFI CCNGG 1 cut(s) 1742
SfaNI GCATC 7 cut(s) 724, 931, 1245, 1669, 1774, 1794, 1854
SinI GGWCC 6 cut(s) 20, 928, 1091, 1192, 1684, 1889
SmiMI CAYNNNNRTG 2 cut(s) 117, 735
SmlI CTYRAG 2 cut(s) 611, 932
SmoI CTYRAG 2 cut(s) 611, 932
Sse9I AATT 4 cut(s) 587, 825, 943, 1394
SsiI CCGC 8 cut(s) 349, 776, 1143, 1302, 1620, 1650, 1698, 1789
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 1740
StyI CCWWGG 3 cut(s) 112, 1226, 1325
TaaI ACNGT 2 cut(s) 55, 1343
TaiI ACGT 3 cut(s) 434, 602, 838
TaqI TCGA 4 cut(s) 647, 990, 1185, 1279
TasI AATT 4 cut(s) 587, 825, 943, 1394
TauI GCSGC 2 cut(s) 1652, 1700
TfiI GAWTC 5 cut(s) 398, 703, 971, 1097, 1582
Tru1I TTAA 5 cut(s) 546, 750, 1014, 1139, 1475
Tru9I TTAA 5 cut(s) 546, 750, 1014, 1139, 1475
TscAI CASTG 3 cut(s) 502, 525, 853
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 5 cut(s) 62, 140, 364, 860, 1601
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 6 cut(s) 549, 1187, 1206, 1403, 1421, 1633
TspGWI ACGGA 2 cut(s) 94, 1041
TspRI CASTG 3 cut(s) 502, 525, 853
VpaK11BI GGWCC 6 cut(s) 20, 928, 1091, 1192, 1684, 1889
XapI RAATTY 1 cut(s) 943
XbaI TCTAGA 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 1412
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 2 cut(s) 717, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.