Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002410

Physical Location & Seq

Genomic Coordinates Forward (+)

11368158 .. 11370501

Gene Structure 2344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAGGAAGATCAATTATTGGAATTTTCTGTTTCACAAAATCTTGTAGAAGCTTGCCATTCATTAGGAGTTATGCATCGAGACCTTAAGCCCGAGAATTTTCTCTTTGTCAGTCAGGAGGAGGATGCACTTCTTAAAACTATTGATTTTGGATTATCTATTTTCTTGAAGCCAGGAGAAAAGTTTACTGATGCGGTAGGGAGCCCATATTATGTCGCTCCAGAAGTCTTACGAAAGCGTTGTGGTCCAGAAGCAGATGTTTGGAGCGCTGGAGTGATTCTTTATATTTTATTAAGTGGGGTACCTCCATTTTGGGCTGAAACGGAGCAAGGAATATTTGATCAGGTCTTGCATGGTGAGCTAGACTTTTCATCAGATCCCTGGCCTAGTATCTCTGACAGTGCCAAAGATTTAGTAAGGAGAATGCTTGTCCGAGACCCTAGAAAGCGGCTGACTGCACACGAAGTTTTGCCACCCCTGGGTGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

163

Amino Acids

18.26

Weight (kDa)

4.77

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 157	1.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 157	8.6e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10660 AT3G10660 AT5G04870
fragaria_vesca	FvH4_6g20840 FvH4_6g20840 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490 FvH4_7g05490
malus_domestica	MD02G1257300.v1.1 MD07G1063300.v1.1 MD12G1044400.v1.1 MD14G1043300.v1.1
prunus_persica	Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.2G075100_v2.0.a1 Prupe.7G090800_v2.0.a1 Prupe.7G090800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0332341 RchiOBHm_Chr3g0464211 RchiOBHm_Chr3g0477181
rosa_laevigata	RLG00000023739 RLG00000029678
rosa_multiflora	Rmu_sc0000932.1_g000001 Rmu_sc0003422.1_g000006
rosa_roxburghii	Rroxscaffold_4G00318280 Rroxscaffold_6G00404350 Rroxscaffold_6G00404850
rosa_rugosa	Rorug01G0100000 Rorug03G0158600
rosa_samantha	Rh1CG118000 Rh1DG129100 Rh3AG208900 Rh3CG236600 Rh3DG235400
rosa_wichuraiana	Rw1G010080 Rw3G019050 Rw3G019440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AciI	CCGC	2 cut(s)	194, 448
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	23, 97
AfaI	GTAC	1 cut(s)	303
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	479
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	3 cut(s)	172, 380, 477
AluBI	AGCT	2 cut(s)	53, 361
AluI	AGCT	2 cut(s)	53, 361
Alw26I	GTCTC	2 cut(s)	75, 429
AlwI	GGATC	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	23, 97
Asp718I	GGTACC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	206
BciT130I	CCWGG	3 cut(s)	174, 382, 479
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	75, 429
BfaI	CTAG	3 cut(s)	362, 387, 441
BfoI	RGCGCY	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	3 cut(s)	174, 382, 479
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	203, 303
BmrFI	CCNGG	3 cut(s)	174, 382, 479
BmsI	GCATC	3 cut(s)	85, 115, 181
BpmI	CTGGAG	2 cut(s)	204, 291
BsaI	GGTCTC	2 cut(s)	75, 429
BsaJI	CCNNGG	3 cut(s)	380, 477, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
BseBI	CCWGG	3 cut(s)	174, 382, 479
BseDI	CCNNGG	3 cut(s)	380, 477, 478
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	385
BshNI	GGYRCC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	75, 429
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	385
Bso31I	GGTCTC	2 cut(s)	75, 429
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	10, 340, 376
BspACI	CCGC	2 cut(s)	194, 448
BspANI	GGCC	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	203, 303
BspPI	GGATC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	2 cut(s)	75, 429
BssECI	CCNNGG	3 cut(s)	380, 477, 478
BssMI	GATC	3 cut(s)	10, 340, 376
Bst2UI	CCWGG	3 cut(s)	174, 382, 479
Bst4CI	ACNGT	1 cut(s)	401
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	13, 343, 379
BstMAI	GTCTC	2 cut(s)	75, 429
BstMBI	GATC	3 cut(s)	10, 340, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	3 cut(s)	174, 382, 479
BstSCI	CCNGG	3 cut(s)	172, 380, 477
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	8 cut(s)	53, 91, 172, 204, 317, 361, 385, 451
CviKI_1	RGCY	8 cut(s)	53, 91, 172, 204, 317, 361, 385, 451
CviQI	GTAC	1 cut(s)	302
DpnI	GATC	3 cut(s)	12, 342, 378
DpnII	GATC	3 cut(s)	10, 340, 376
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	2 cut(s)	75, 429
Eco47I	GGWCC	1 cut(s)	245
Eco47III	AGCGCT	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	92
EcoRII	CCWGG	3 cut(s)	172, 380, 477
EcoT22I	ATGCAT	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	1 cut(s)	356
FaiI	YATR	5 cut(s)	74, 208, 213, 285, 354
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	449
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	3 cut(s)	362, 387, 441
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	449
GsuI	CTGGAG	2 cut(s)	204, 291
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	277
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	376, 397, 434
Hpy188III	TCNNGA	5 cut(s)	80, 116, 166, 221, 248
Hpy8I	GTNNAC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	6 cut(s)	4, 76, 128, 352, 458, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	267
KpnI	GGTACC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	10, 340, 376
LmnI	GCTCC	4 cut(s)	201, 223, 264, 325
LweI	GCATC	3 cut(s)	85, 115, 181
MaeI	CTAG	3 cut(s)	362, 387, 441
MalI	GATC	3 cut(s)	12, 342, 378
MboI	GATC	3 cut(s)	10, 340, 376
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	3 cut(s)	14, 23, 97
MnlI	CCTC	3 cut(s)	112, 115, 315
Mph1103I	ATGCAT	1 cut(s)	78
MseI	TTAA	3 cut(s)	87, 135, 293
MspCI	CTTAAG	1 cut(s)	86
MspR9I	CCNGG	3 cut(s)	174, 382, 479
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	174, 382, 479
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	3 cut(s)	10, 340, 376
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	203, 303
NsiI	ATGCAT	1 cut(s)	78
PasI	CCCWGGG	1 cut(s)	478
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	172, 380, 477
PspGI	CCWGG	3 cut(s)	172, 380, 477
PspN4I	GGNNCC	2 cut(s)	203, 303
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	87, 135, 293
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	3 cut(s)	10, 340, 376
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	3 cut(s)	174, 382, 479
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	5 cut(s)	55, 87, 307, 348, 363
SfaNI	GCATC	3 cut(s)	85, 115, 181
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	14, 23, 97
SsiI	CCGC	2 cut(s)	194, 448
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	3 cut(s)	362, 387, 441
StyD4I	CCNGG	3 cut(s)	172, 380, 477
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	79
TasI	AATT	3 cut(s)	14, 23, 97
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	3 cut(s)	87, 135, 293
Tru9I	TTAA	3 cut(s)	87, 135, 293
TscAI	CASTG	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	51, 360
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	406
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	23, 97
XspI	CTAG	3 cut(s)	362, 387, 441
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.