MD07G1063300.v1.1

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
5928767 .. 5933298
4532 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1063300.v1.1.491

Sequence Viewer

Length: 1491 bp
ATGGGTAACACTTGTGTTGGACCGAGCATTTCCAAGAATGCTTTCTTCCAATCAGTTTCAGCTGTAATGTGGCCAAACCGCTCTCCCGATGACTCAGTTCATACTAACAGAGAACCTGTCAATGAGACATCATCACCTAAGGAACCTGAGTCGCCTATGCCAGTACTAGACAAACCACCAGAGCAAGTGACAATACCAAAACCAGAAACCGAGCCAAAGCAATCCGCAAAACCTGAAACTGAGCCAAAACAATCCGCAAAACCCAAGAAGCCACCGCAGATAAAGAGGGTCCCTAGTGCAGGACTTCAGGCTGGTTCGGTGTTGCAAACGAAAACCGGAAAGATAAAGGAGTTTTACAGTTTTGGGAGGAAACTTGGACAGGGGCAGTTTGGAATAACGTTTCTGTGTGTGGAGAAGGCGACAGGGAAAGAGTATGCGTGCAAATCGATTGCGAAAAGGAAGTTAATAACTGATGACGATGTGGAGGATGTGAGGAGGGAAATTCAGATCATGCACCATCTGGCAGGCCACCCAAATGTTATCTCTATTAAGGGAGCTTATGAGGATGCTGTAGCAGTTCATGTTGTTATGGAATTATGTGCAGGAGGTGAGCTCTTTGATAGGATTATCCAGCGCGGGCATTATACAGAAAGAAAGGCAGCTGAGCTAACTAGGACTATAGTTGGAGTGGTCGAAGCTTGCCATTCATTGGGAGTTATGCATCGAGACCTTAAACCAGAGAACTTTCTCTTTGTCAGTCAGGATGAGGATGCACTTCTCAAAACTATTGATTTTGGATTGTCAATTTTCTTGAAGCCAGGAGTAAAATATAGTGATGTGGTTGGAAGCCCATATTATGTTGCACCTGAAGTGTTACGCAAGCGTTATGGTCCAGAAGCAGATGTCTGGAGTGCAGGGGTGATCGTTTACATTCTGTTAAGTGGGGTACCGCCATTTTGGGCTGAAAATGAGGAAGGAATATTTGACCAGGTCCTACATGGTGACCTAGATTTCGAATCAGACCCTTGGCCTAGTATTTCTGATGGTGCCAAAGATTTAGTGAGGAGAATGCTTGTCCGAGACCCCAAAAGGCGGCTGACAGCCCATGAAGTTTTGTGCCACCCCTGGGTGCAAGTTGATGGTGTGGCTCCCGATAAGGCTCTTGATTCTGCAGTTCTAAGTCGCTTAAAACAATTTTCGGCTATGAACAAACTCAAGAAAATGGCTCTCAGAGTCATTGCAGAGAACTTGTCTGTAGAAGAAATAGCTGGCCTGAAAGAAATGTTCAAGATGATAGACACTGACAACAGTGGTCAAATCACTTTTGACGAACTAAAGATTGGATTGAAAAGATTTGGGGCAAATCTAAAGGAGTCTGAAATTTATGATCTAATGCAAGCAGTATGTACCTCTTACCCTCTCTGGCCAGTGCTTCGTCAAGCCATAGCTACTATGGTCATGCCAGCCATGTTGACCTGTTTTAAGAATTAA

Protein Analysis

497

Amino Acids

55.19

Weight (kDa)

6.62

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 119 - 377 8.7e-77 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 121 - 371 5.6e-24 Protein tyrosine and serine/threonine kinase
EF-hand_1 PF00036 425 - 451 4.2e-08 EF hand domain
EF-hand_6 PF13405 425 - 453 9.1e-07 EF-hand domain
EF-hand_7 PF13499 425 - 466 4e-06 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 946
AccB1I GGYRCC 2 cut(s) 946, 1046
AccB7I CCANNNNNTGG 1 cut(s) 709
AccBSI CCGCTC 1 cut(s) 81
AccII CGCG 1 cut(s) 636
AciI CCGC 7 cut(s) 79, 225, 255, 275, 636, 950, 1093
AclI AACGTT 1 cut(s) 398
AcoI YGGCCR 2 cut(s) 71, 1424
AcsI RAATTY 2 cut(s) 501, 1380
AcuI CTGAAG 2 cut(s) 290, 888
AfaI GTAC 3 cut(s) 165, 948, 1408
AfiI CCNNNNNNNGG 4 cut(s) 299, 709, 1092, 1126
AgsI TTSAA 3 cut(s) 814, 1288, 1348
AjnI CCWGG 3 cut(s) 817, 987, 1124
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 1323, 1355
AluBI AGCT 8 cut(s) 62, 557, 613, 662, 667, 698, 1268, 1448
AluI AGCT 8 cut(s) 62, 557, 613, 662, 667, 698, 1268, 1448
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 3 cut(s) 119, 720, 1074
AoxI GGCC 5 cut(s) 71, 526, 1028, 1270, 1424
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 2 cut(s) 501, 1380
ArsI GACNNNNNNTTYG 2 cut(s) 995, 1027
Asp700I GAANNNNTTC 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 946
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 4 cut(s) 20, 289, 890, 991
AsuHPI GGTGA 4 cut(s) 126, 620, 931, 1013
AsuII TTCGAA 1 cut(s) 1014
AvaII GGWCC 4 cut(s) 20, 289, 890, 991
AxyI CCTNAGG 1 cut(s) 138
BalI TGGCCA 2 cut(s) 73, 1426
BanI GGYRCC 2 cut(s) 946, 1046
BanII GRGCYC 1 cut(s) 615
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 671
BccI CCATC 3 cut(s) 525, 1037, 1133
BciT130I CCWGG 3 cut(s) 819, 989, 1126
BcoDI GTCTC 3 cut(s) 119, 720, 1074
BfaI CTAG 5 cut(s) 167, 294, 672, 1007, 1032
BfmI CTRYAG 4 cut(s) 570, 678, 1170, 1254
BisI GCNGC 2 cut(s) 660, 1094
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 2 cut(s) 661, 1095
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 3 cut(s) 819, 989, 1126
Bme18I GGWCC 4 cut(s) 20, 289, 890, 991
BmgT120I GGNCC 4 cut(s) 20, 289, 890, 991
BmiI GGNNCC 6 cut(s) 144, 290, 291, 948, 1048, 1149
BmrFI CCNGG 3 cut(s) 819, 989, 1126
BmsI GCATC 3 cut(s) 556, 730, 760
BplI GAGNNNNNCTC 2 cut(s) 597, 629
BpmI CTGGAG 1 cut(s) 928
Bpu1102I GCTNAGC 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 1199
Bsa29I ATCGAT 1 cut(s) 446
BsaI GGTCTC 2 cut(s) 720, 1074
BsaJI CCNNGG 3 cut(s) 1025, 1124, 1125
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 709, 1092, 1126
Bse1I ACTGG 2 cut(s) 161, 1427
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 1236
BseBI CCWGG 3 cut(s) 819, 989, 1126
BseCI ATCGAT 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 1025, 1124, 1125
BseGI GGATG 4 cut(s) 493, 571, 769, 775
BseLI CCNNNNNNNGG 4 cut(s) 299, 709, 1092, 1126
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 5 cut(s) 108, 138, 231, 654, 1243
BseNI ACTGG 2 cut(s) 161, 1427
BseRI GAGGAG 2 cut(s) 508, 1078
BseXI GCAGC 1 cut(s) 671
BsgI GTGCAG 3 cut(s) 318, 621, 933
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 5 cut(s) 73, 528, 1030, 1272, 1426
BshNI GGYRCC 2 cut(s) 946, 1046
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 4 cut(s) 299, 709, 1092, 1126
BsmAI GTCTC 3 cut(s) 119, 720, 1074
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 2 cut(s) 43, 1074
BsnI GGCC 5 cut(s) 73, 528, 1030, 1272, 1426
Bso31I GGTCTC 2 cut(s) 720, 1074
Bsp119I TTCGAA 1 cut(s) 1014
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 3 cut(s) 507, 921, 1387
Bsp1720I GCTNAGC 1 cut(s) 663
BspACI CCGC 7 cut(s) 79, 225, 255, 275, 636, 950, 1093
BspANI GGCC 5 cut(s) 73, 528, 1030, 1272, 1426
BspCNI CTCAG 5 cut(s) 107, 139, 232, 655, 1242
BspDI ATCGAT 1 cut(s) 446
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 6 cut(s) 144, 290, 291, 948, 1048, 1149
BspMAI CTGCAG 1 cut(s) 1174
BspT104I TTCGAA 1 cut(s) 1014
BspT107I GGYRCC 2 cut(s) 946, 1046
BspTNI GGTCTC 2 cut(s) 720, 1074
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 1236
BsrI ACTGG 2 cut(s) 161, 1427
BssECI CCNNGG 3 cut(s) 1025, 1124, 1125
BssMI GATC 3 cut(s) 507, 921, 1387
BssT1I CCWWGG 1 cut(s) 1025
Bst2UI CCWGG 3 cut(s) 819, 989, 1126
Bst4CI ACNGT 2 cut(s) 359, 1310
BstBI TTCGAA 1 cut(s) 1014
BstC8I GCNNGC 8 cut(s) 439, 526, 638, 700, 881, 1270, 1398, 1464
BstDEI CTNAG 7 cut(s) 94, 138, 147, 240, 663, 1178, 1229
BstEII GGTNACC 1 cut(s) 1001
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 493, 571, 769, 775
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 3 cut(s) 510, 924, 1390
BstMAI GTCTC 3 cut(s) 119, 720, 1074
BstMBI GATC 3 cut(s) 507, 921, 1387
BstNI CCWGG 3 cut(s) 819, 989, 1126
BstPI GGTNACC 1 cut(s) 1001
BstSCI CCNGG 3 cut(s) 817, 987, 1124
BstSFI CTRYAG 4 cut(s) 570, 678, 1170, 1254
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 1 cut(s) 671
Bsu15I ATCGAT 1 cut(s) 446
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 5 cut(s) 73, 528, 1030, 1272, 1426
BsuTUI ATCGAT 1 cut(s) 446
BtsCI GGATG 4 cut(s) 493, 571, 769, 775
BtsIMutI CAGTG 3 cut(s) 1299, 1315, 1434
Cac8I GCNNGC 8 cut(s) 439, 526, 638, 700, 881, 1270, 1398, 1464
CfoI GCGC 1 cut(s) 636
Cfr13I GGNCC 4 cut(s) 20, 289, 890, 991
ClaI ATCGAT 1 cut(s) 446
CsiI ACCWGGT 1 cut(s) 987
Csp6I GTAC 3 cut(s) 164, 947, 1407
CviAII CATG 6 cut(s) 511, 581, 998, 1106, 1459, 1468
CviQI GTAC 3 cut(s) 164, 947, 1407
DdeI CTNAG 7 cut(s) 94, 138, 147, 240, 663, 1178, 1229
DpnI GATC 3 cut(s) 509, 923, 1389
DpnII GATC 3 cut(s) 507, 921, 1387
EaeI YGGCCR 2 cut(s) 71, 1424
Ecl136II GAGCTC 1 cut(s) 613
Eco130I CCWWGG 1 cut(s) 1025
Eco24I GRGCYC 1 cut(s) 615
Eco31I GGTCTC 2 cut(s) 720, 1074
Eco47I GGWCC 4 cut(s) 20, 289, 890, 991
Eco53kI GAGCTC 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 290, 888
Eco81I CCTNAGG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 1001
EcoICRI GAGCTC 1 cut(s) 613
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO109I RGGNCCY 2 cut(s) 289, 991
EcoO65I GGTNACC 1 cut(s) 1001
EcoRII CCWGG 3 cut(s) 817, 987, 1124
EcoT14I CCWWGG 1 cut(s) 1025
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 1025
FaeI CATG 6 cut(s) 514, 584, 1001, 1109, 1462, 1471
FaqI GGGAC 1 cut(s) 275
FatI CATG 6 cut(s) 510, 580, 997, 1105, 1458, 1467
FauI CCCGC 1 cut(s) 629
Fnu4HI GCNGC 2 cut(s) 660, 1094
FokI GGATG 4 cut(s) 500, 578, 776, 782
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 2 cut(s) 660, 1094
FspBI CTAG 5 cut(s) 167, 294, 672, 1007, 1032
GlaI GCGC 1 cut(s) 635
GluI GCNGC 2 cut(s) 660, 1094
GsuI CTGGAG 1 cut(s) 928
HaeIII GGCC 5 cut(s) 73, 528, 1030, 1272, 1426
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 636
Hin1II CATG 6 cut(s) 514, 584, 1001, 1109, 1462, 1471
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HincII GTYRAC 1 cut(s) 1473
HindII GTYRAC 1 cut(s) 1473
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 6 cut(s) 92, 149, 1016, 1166, 1233, 1373
HpaII CCGG 1 cut(s) 336
HphI GGTGA 4 cut(s) 126, 620, 931, 1013
Hpy166II GTNNAC 2 cut(s) 928, 1473
Hpy188I TCNGA 6 cut(s) 507, 1021, 1042, 1079, 1232, 1378
Hpy8I GTNNAC 2 cut(s) 928, 1473
HpyAV CCTTC 2 cut(s) 409, 968
HpyCH4III ACNGT 2 cut(s) 359, 1310
HpyCH4IV ACGT 1 cut(s) 398
HpyF3I CTNAG 7 cut(s) 94, 138, 147, 240, 663, 1178, 1229
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 6 cut(s) 514, 584, 1001, 1109, 1462, 1471
HspAI GCGC 1 cut(s) 634
KflI GGGWCCC 1 cut(s) 289
KpnI GGTACC 1 cut(s) 950
Kzo9I GATC 3 cut(s) 507, 921, 1387
LmnI GCTCC 2 cut(s) 554, 1153
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 3 cut(s) 556, 730, 760
MabI ACCWGGT 1 cut(s) 987
MaeI CTAG 5 cut(s) 167, 294, 672, 1007, 1032
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 4 cut(s) 5, 187, 873, 1001
MalI GATC 3 cut(s) 509, 923, 1389
MbiI CCGCTC 1 cut(s) 81
MboI GATC 3 cut(s) 507, 921, 1387
MboII GAAGA 2 cut(s) 37, 1271
MhlI GDGCHC 1 cut(s) 615
MlsI TGGCCA 2 cut(s) 73, 1426
MluCI AATT 6 cut(s) 501, 593, 804, 1193, 1380, 1486
MluNI TGGCCA 2 cut(s) 73, 1426
MlyI GAGTC 4 cut(s) 86, 158, 1242, 1382
MmeI TCCRAC 2 cut(s) 664, 823
Mox20I TGGCCA 2 cut(s) 73, 1426
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 41
MscI TGGCCA 2 cut(s) 73, 1426
MseI TTAA 7 cut(s) 464, 549, 732, 938, 1187, 1482, 1489
MslI CAYNNNNRTG 1 cut(s) 534
Msp20I TGGCCA 2 cut(s) 73, 1426
MspA1I CMGCKG 2 cut(s) 62, 662
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 3 cut(s) 819, 989, 1126
Mva1269I GAATGC 2 cut(s) 43, 1074
MvaI CCWGG 3 cut(s) 819, 989, 1126
MvnI CGCG 1 cut(s) 636
NdeII GATC 3 cut(s) 507, 921, 1387
NlaIII CATG 6 cut(s) 514, 584, 1001, 1109, 1462, 1471
NlaIV GGNNCC 6 cut(s) 144, 290, 291, 948, 1048, 1149
NmuCI GTSAC 2 cut(s) 187, 1001
NsiI ATGCAT 1 cut(s) 723
NspV TTCGAA 1 cut(s) 1014
PasI CCCWGGG 1 cut(s) 1125
PctI GAATGC 2 cut(s) 43, 1074
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 1016, 1166
PflFI GACNNNGTC 1 cut(s) 989
PflMI CCANNNNNTGG 1 cut(s) 709
PkrI GCNGC 2 cut(s) 661, 1095
PleI GAGTC 4 cut(s) 86, 157, 1241, 1381
PpsI GAGTC 4 cut(s) 86, 157, 1241, 1381
PpuMI RGGWCCY 2 cut(s) 289, 991
Psp124BI GAGCTC 1 cut(s) 615
Psp1406I AACGTT 1 cut(s) 398
Psp5II RGGWCCY 2 cut(s) 289, 991
Psp6I CCWGG 3 cut(s) 817, 987, 1124
PspEI GGTNACC 1 cut(s) 1001
PspGI CCWGG 3 cut(s) 817, 987, 1124
PspN4I GGNNCC 6 cut(s) 144, 290, 291, 948, 1048, 1149
PspPI GGNCC 4 cut(s) 20, 289, 890, 991
PspPPI RGGWCCY 2 cut(s) 289, 991
PstI CTGCAG 1 cut(s) 1174
PsyI GACNNNGTC 1 cut(s) 989
PvuII CAGCTG 2 cut(s) 62, 662
RsaI GTAC 3 cut(s) 165, 948, 1408
RsaNI GTAC 3 cut(s) 164, 947, 1407
RseI CAYNNNNRTG 1 cut(s) 534
SacI GAGCTC 1 cut(s) 615
SaqAI TTAA 7 cut(s) 464, 549, 732, 938, 1187, 1482, 1489
SatI GCNGC 2 cut(s) 660, 1094
Sau3AI GATC 3 cut(s) 507, 921, 1387
Sau96I GGNCC 4 cut(s) 20, 289, 890, 991
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 4 cut(s) 86, 158, 1242, 1382
ScrFI CCNGG 3 cut(s) 819, 989, 1126
SduI GDGCHC 1 cut(s) 615
SexAI ACCWGGT 1 cut(s) 987
SfaNI GCATC 3 cut(s) 556, 730, 760
SfcI CTRYAG 4 cut(s) 570, 678, 1170, 1254
SfuI TTCGAA 1 cut(s) 1014
SinI GGWCC 4 cut(s) 20, 289, 890, 991
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
Sse9I AATT 6 cut(s) 501, 593, 804, 1193, 1380, 1486
SsiI CCGC 7 cut(s) 79, 225, 255, 275, 636, 950, 1093
SspI AATATT 1 cut(s) 981
SspMI CTAG 5 cut(s) 167, 294, 672, 1007, 1032
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 3 cut(s) 817, 987, 1124
StyI CCWWGG 1 cut(s) 1025
TaaI ACNGT 2 cut(s) 359, 1310
TaiI ACGT 1 cut(s) 401
TaqI TCGA 4 cut(s) 446, 693, 724, 1014
TaqII GACCGA 1 cut(s) 37
TasI AATT 6 cut(s) 501, 593, 804, 1193, 1380, 1486
TatI WGTACW 1 cut(s) 163
TauI GCSGC 1 cut(s) 1096
TfiI GAWTC 2 cut(s) 1016, 1166
Tru1I TTAA 7 cut(s) 464, 549, 732, 938, 1187, 1482, 1489
Tru9I TTAA 7 cut(s) 464, 549, 732, 938, 1187, 1482, 1489
TscAI CASTG 3 cut(s) 1306, 1315, 1434
TseFI GTSAC 2 cut(s) 187, 1001
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 2 cut(s) 187, 1001
TspDTI ATGAA 5 cut(s) 89, 569, 696, 1122, 1220
TspRI CASTG 3 cut(s) 1306, 1315, 1434
Tth111I GACNNNGTC 1 cut(s) 989
Van91I CCANNNNNTGG 1 cut(s) 709
VpaK11BI GGWCC 4 cut(s) 20, 289, 890, 991
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 2 cut(s) 501, 1380
XcmI CCANNNNNNNNNTGG 2 cut(s) 995, 1450
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 5 cut(s) 167, 294, 672, 1007, 1032
ZrmI AGTACT 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.