pycom07g04840

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009366
Physical Location & Seq
Reverse (-)
4156871 .. 4158527
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04840.3

Sequence Viewer

Length: 1098 bp
ATGGTAAGAATAGCATTATTAATATTAGAATTGACTCATTGTCTCGGTAGGTCAAATTCCAACTCTTTGCAAGTTGCCCGACCTGAACATTATTTATCAAAAATAAATAAAAATAGAAAAAAGAACCCGTTGAACGCAACAACAGGAAAACGCATATTTCTGTGCGAGCCACAGCCGAAGAAGAAAGAGGAGGCAAACTCTCTCCTTCTATCTATCTTTCTCTCTCTCCCATTCGCCTTGGGTTTCCACATCCTCTGCAACAACGAAGCTCTCTCCTCCAAATCCAGGAAGATATTGGCAAGATACAAAATAAAAATGTATGGATCCACAGCGAAGCGGCTTCTCCAGCACTTTGGCGGACCGTTGGTTGGCTGTAGCGGTACCCACATGATTCGATTCCGTCCTCTTCAATCCCTTGTTAGTCGTTCTCACTTTTCCACCACTGTGAACTCTGAACCATTTGCCAATAAACCCCCTAGTTTTGCGAATTCCACATCATCATATGCCGATGAATTCCCTAATATTTCAAATTCCTCGTCGTCAACAGCCGATCACACTAGGAGATCGAGAGTGGAATACCAAGATGAGCAAGCTCGTGTGCTCCAAGCCTCCCTTCCGCATGTGATAAGGTTGGGATGGAGTGAAGCTGCGATGATTGCTGGTGCGAAGGATGTTGGCGTGTCTCCATCTATTGTTGGATCATTTCCGAGGAAAGAAGGAATGTTGGTTGAGTTTTTCATGGATGATTGTTTGCAGAGGCTTATTGATACAATCGAGTCAAGTGCAGATGAGCTGAAAAGTTTGATACCCAGTGACCGTATCACCAAGCTTATCCGCATTCGCTTAGAAATGCAGGCACCCTACATATCGAAATGGCCTCCAGCTCTTAGCATCCAGGCACAACCAGTGAACGTCCCCACAAGCTTTAAGCAGAGAGCGATGCTTGTGGAGGAGATCTGGCATGGTGCTGGCGACGACACCGCTGATTTTCAGTGGTATGTGAAGCGGACTGTCCTTGGAGGAATATACTCCACAACTGAGATTTACATGCTTACTGACAATTCCCCAGATTTTCGTGATACATGGGCATTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

366

Amino Acids

41.01

Weight (kDa)

9.43

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 2 cut(s) 380, 856
AciI CCGC 7 cut(s) 337, 357, 378, 617, 835, 981, 1006
AclWI GGATC 3 cut(s) 318, 331, 706
AcsI RAATTY 4 cut(s) 55, 487, 512, 529
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 2 cut(s) 285, 368
AgsI TTSAA 3 cut(s) 133, 410, 528
AhdI GACNNNNNGTC 1 cut(s) 39
AjnI CCWGG 2 cut(s) 284, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 7 cut(s) 269, 593, 647, 793, 829, 884, 924
AluI AGCT 7 cut(s) 269, 593, 647, 793, 829, 884, 924
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 2 cut(s) 47, 687
AlwI GGATC 3 cut(s) 318, 331, 706
AoxI GGCC 1 cut(s) 875
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 4 cut(s) 55, 487, 512, 529
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AseI ATTAAT 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 814
AvaII GGWCC 1 cut(s) 359
BamHI GGATCC 1 cut(s) 323
BanI GGYRCC 2 cut(s) 380, 856
BauI CACGAG 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 634
BccI CCATC 2 cut(s) 630, 694
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 2 cut(s) 286, 896
BcoDI GTCTC 2 cut(s) 47, 687
BfaI CTAG 2 cut(s) 477, 558
BfmI CTRYAG 1 cut(s) 373
BglII AGATCT 1 cut(s) 954
BisI GCNGC 2 cut(s) 338, 648
BlsI GCNGC 2 cut(s) 339, 649
Bme1390I CCNGG 2 cut(s) 286, 896
Bme18I GGWCC 1 cut(s) 359
BmeRI GACNNNNNGTC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 3 cut(s) 325, 382, 858
BmrFI CCNGG 2 cut(s) 286, 896
BmrI ACTGGG 1 cut(s) 804
BmsI GCATC 2 cut(s) 900, 930
BmuI ACTGGG 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 2 cut(s) 329, 864
BsaJI CCNNGG 3 cut(s) 237, 707, 1015
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 368
Bse1I ACTGG 2 cut(s) 810, 905
BseBI CCWGG 2 cut(s) 286, 896
BseDI CCNNGG 3 cut(s) 237, 707, 1015
BseGI GGATG 5 cut(s) 249, 641, 676, 748, 891
BseLI CCNNNNNNNGG 2 cut(s) 285, 368
BseMII CTCAG 1 cut(s) 1029
BseNI ACTGG 2 cut(s) 810, 905
BseRI GAGGAG 3 cut(s) 203, 265, 965
BseXI GCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 804
BshFI GGCC 1 cut(s) 877
BshNI GGYRCC 2 cut(s) 380, 856
BsiHKAI GWGCWC 1 cut(s) 603
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 2 cut(s) 285, 368
BsmAI GTCTC 2 cut(s) 47, 687
BsmFI GGGAC 1 cut(s) 899
BsmI GAATGC 2 cut(s) 837, 1088
BsnI GGCC 1 cut(s) 877
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 5 cut(s) 323, 550, 563, 698, 954
BspACI CCGC 7 cut(s) 337, 357, 378, 617, 835, 981, 1006
BspANI GGCC 1 cut(s) 877
BspCNI CTCAG 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 325, 382, 858
BspPI GGATC 3 cut(s) 318, 331, 706
BspT107I GGYRCC 2 cut(s) 380, 856
BsrI ACTGG 2 cut(s) 810, 905
BssECI CCNNGG 3 cut(s) 237, 707, 1015
BssMI GATC 5 cut(s) 323, 550, 563, 698, 954
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 2 cut(s) 237, 1015
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 2 cut(s) 286, 896
Bst4CI ACNGT 4 cut(s) 363, 445, 818, 1012
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 4 cut(s) 167, 591, 855, 970
BstDEI CTNAG 3 cut(s) 844, 887, 1038
BstF5I GGATG 5 cut(s) 249, 641, 676, 748, 891
BstKTI GATC 5 cut(s) 326, 553, 566, 701, 957
BstMAI GTCTC 2 cut(s) 47, 687
BstMBI GATC 5 cut(s) 323, 550, 563, 698, 954
BstMWI GCNNNNNNNGC 2 cut(s) 346, 656
BstNI CCWGG 2 cut(s) 286, 896
BstNSI RCATGY 2 cut(s) 623, 1051
BstSCI CCNGG 2 cut(s) 284, 894
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 634
BstX2I RGATCY 2 cut(s) 323, 954
BstXI CCANNNNNNTGG 1 cut(s) 353
BstYI RGATCY 2 cut(s) 323, 954
BsuRI GGCC 1 cut(s) 877
BtgZI GCGATG 2 cut(s) 665, 953
BtsCI GGATG 5 cut(s) 249, 641, 676, 748, 891
BtsIMutI CAGTG 4 cut(s) 441, 817, 912, 998
Cac8I GCNNGC 4 cut(s) 167, 591, 855, 970
Cfr13I GGNCC 1 cut(s) 359
CpoI CGGWCCG 1 cut(s) 359
Csp6I GTAC 1 cut(s) 381
CspI CGGWCCG 1 cut(s) 359
CviAII CATG 6 cut(s) 388, 620, 739, 962, 1048, 1083
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 3 cut(s) 844, 887, 1038
DpnI GATC 5 cut(s) 325, 552, 565, 700, 956
DpnII GATC 5 cut(s) 323, 550, 563, 698, 954
DriI GACNNNNNGTC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 411
Eam1105I GACNNNNNGTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 372
Eco130I CCWWGG 2 cut(s) 237, 1015
Eco47I GGWCC 1 cut(s) 359
EcoRI GAATTC 2 cut(s) 487, 512
EcoRII CCWGG 2 cut(s) 284, 894
EcoT14I CCWWGG 2 cut(s) 237, 1015
ErhI CCWWGG 2 cut(s) 237, 1015
FaeI CATG 6 cut(s) 391, 623, 742, 965, 1051, 1086
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 899
FatI CATG 6 cut(s) 387, 619, 738, 961, 1047, 1082
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 338, 648
FokI GGATG 5 cut(s) 236, 648, 683, 755, 878
Fsp4HI GCNGC 2 cut(s) 338, 648
FspBI CTAG 2 cut(s) 477, 558
GluI GCNGC 2 cut(s) 338, 648
GsuI CTGGAG 2 cut(s) 329, 864
HaeIII GGCC 1 cut(s) 877
Hin1II CATG 6 cut(s) 391, 623, 742, 965, 1051, 1086
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HindIII AAGCTT 2 cut(s) 827, 922
HinfI GANTC 4 cut(s) 34, 391, 396, 776
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 3 cut(s) 448, 543, 910
Hpy188I TCNGA 2 cut(s) 454, 708
Hpy188III TCNNGA 2 cut(s) 567, 1076
Hpy8I GTNNAC 3 cut(s) 448, 543, 910
Hpy99I CGWCG 2 cut(s) 541, 977
HpyAV CCTTC 4 cut(s) 215, 623, 661, 710
HpyCH4III ACNGT 4 cut(s) 363, 445, 818, 1012
HpyCH4IV ACGT 1 cut(s) 912
HpyCH4V TGCA 5 cut(s) 70, 258, 754, 785, 853
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 656
HpyF3I CTNAG 3 cut(s) 844, 887, 1038
HpySE526I ACGT 1 cut(s) 912
Hsp92II CATG 6 cut(s) 391, 623, 742, 965, 1051, 1086
KpnI GGTACC 1 cut(s) 384
Kzo9I GATC 5 cut(s) 323, 550, 563, 698, 954
LmnI GCTCC 1 cut(s) 606
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 2 cut(s) 900, 930
MaeI CTAG 2 cut(s) 477, 558
MaeII ACGT 1 cut(s) 912
MaeIII GTNAC 1 cut(s) 812
MalI GATC 5 cut(s) 325, 552, 565, 700, 956
MboI GATC 5 cut(s) 323, 550, 563, 698, 954
MboII GAAGA 4 cut(s) 190, 193, 301, 398
MflI RGATCY 2 cut(s) 323, 954
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 6 cut(s) 29, 55, 487, 512, 529, 1060
MlyI GAGTC 2 cut(s) 28, 785
MmeI TCCRAC 2 cut(s) 84, 676
MseI TTAA 2 cut(s) 20, 927
MslI CAYNNNNRTG 2 cut(s) 443, 1093
MspA1I CMGCKG 1 cut(s) 983
MspR9I CCNGG 2 cut(s) 286, 896
Mva1269I GAATGC 2 cut(s) 837, 1088
MvaI CCWGG 2 cut(s) 286, 896
MwoI GCNNNNNNNGC 2 cut(s) 346, 656
NdeI CATATG 1 cut(s) 502
NdeII GATC 5 cut(s) 323, 550, 563, 698, 954
NlaIII CATG 6 cut(s) 391, 623, 742, 965, 1051, 1086
NlaIV GGNNCC 3 cut(s) 325, 382, 858
NmuCI GTSAC 1 cut(s) 812
NspI RCATGY 2 cut(s) 623, 1051
OliI CACNNNNGTG 1 cut(s) 443
PctI GAATGC 2 cut(s) 837, 1088
PfeI GAWTC 2 cut(s) 391, 396
PfoI TCCNGGA 1 cut(s) 284
PkrI GCNGC 2 cut(s) 339, 649
PleI GAGTC 2 cut(s) 28, 784
PpsI GAGTC 2 cut(s) 28, 784
PshBI ATTAAT 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 284, 894
PspGI CCWGG 2 cut(s) 284, 894
PspN4I GGNNCC 3 cut(s) 325, 382, 858
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 2 cut(s) 323, 954
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 2 cut(s) 443, 1093
Rsr2I CGGWCCG 1 cut(s) 359
RsrII CGGWCCG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 20, 927
SatI GCNGC 2 cut(s) 338, 648
Sau3AI GATC 5 cut(s) 323, 550, 563, 698, 954
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 2 cut(s) 28, 785
ScrFI CCNGG 2 cut(s) 286, 896
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 2 cut(s) 900, 930
SfcI CTRYAG 1 cut(s) 373
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 443, 1093
Sse9I AATT 6 cut(s) 29, 55, 487, 512, 529, 1060
SsiI CCGC 7 cut(s) 337, 357, 378, 617, 835, 981, 1006
SspI AATATT 2 cut(s) 24, 523
SspMI CTAG 2 cut(s) 477, 558
StyD4I CCNGG 2 cut(s) 284, 894
StyI CCWWGG 2 cut(s) 237, 1015
TaaI ACNGT 4 cut(s) 363, 445, 818, 1012
TaiI ACGT 1 cut(s) 915
TaqI TCGA 4 cut(s) 394, 566, 774, 869
TasI AATT 6 cut(s) 29, 55, 487, 512, 529, 1060
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 2 cut(s) 391, 396
Tru1I TTAA 2 cut(s) 20, 927
Tru9I TTAA 2 cut(s) 20, 927
TscAI CASTG 4 cut(s) 448, 817, 912, 998
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 2 cut(s) 525, 727
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 4 cut(s) 448, 817, 912, 998
VpaK11BI GGWCC 1 cut(s) 359
VspI ATTAAT 1 cut(s) 20
XapI RAATTY 4 cut(s) 55, 487, 512, 529
XceI RCATGY 2 cut(s) 623, 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XspI CTAG 2 cut(s) 477, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.