Rorug01G0100100

Ubiquinone biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009366
Physical Location & Seq
Reverse (-)
16680073 .. 16680982
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0100100.1

Sequence Viewer

Length: 663 bp
ATGGAAGAATTTGAGAAGAAGGTAACAATTAGAGACGACGGCGATCGGGACGGCGACGGCGACGCAGTAATGGAAGCAGAAGAAGAAGAAGAAGAAGCTAAGAAGGTGTCCACCGTTGAATTGCTTCGCGAATTTCTTGGAATTCAGCAGCGCAGAGCAGAAGCATACACCAAGCTCAGAACGGGGTTCGCCCACTATATGGAGTCTTCATCATCTTCCTCTGCCGAGTCCGCCTATCAAAAGCTTTGCGGCGACGTCACCCAGGAATTCAACGATTGCTCTAGGCAAGTCCTTCAGATGGAATCGCTTTTTCTGGGTCCTGATTATGGCAGACTTGATTTGGCCCATCTCCTCAGAGCTGTTCAGACGCATGAGAAGCAGAAATTGAACCTGACGGCGACACTTCAGTTGTTGAAGAAGGCTGGTAGACCCTCGGAGCGTCTAGTGAGTCATGAAAACTGCAGATTTGAGAAACCAATGGAGCATCAGTGTGTGCATCTCCATGAGATAACAGAAGCAGCTGGAACTGAAGAAGCAGAAGCCAACGCCCAGTATGATAATGATCTCAAGGAAGCCATTCGAGGGGTGCAGGATTCTGTGACTGCTATAAATGAACATTTGGAAGAAGTCAGATATGAAATTGCTGCCCTTGAAGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COQ9

Protein Analysis

220

Amino Acids

24.95

Weight (kDa)

4.76

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_repr_REX1B PF14966 40 - 139 2.8e-29 DNA repair REX1-B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 199
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 231, 249
AcsI RAATTY 4 cut(s) 8, 131, 141, 266
AcuI CTGAAG 3 cut(s) 278, 389, 549
AcyI GRCGYC 1 cut(s) 255
AfiI CCNNNNNNNGG 4 cut(s) 199, 298, 326, 582
AgsI TTSAA 5 cut(s) 119, 271, 388, 415, 653
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 6 cut(s) 98, 175, 244, 359, 521, 656
AluI AGCT 6 cut(s) 98, 175, 244, 359, 521, 656
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 148, 518, 644
ApoI RAATTY 4 cut(s) 8, 131, 141, 266
Asp700I GAANNNNTTC 2 cut(s) 123, 576
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 317, 343
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 160, 530, 631
BccI CCATC 2 cut(s) 292, 354
BceAI ACGGC 4 cut(s) 55, 67, 73, 411
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 282, 443
BfmI CTRYAG 1 cut(s) 460
BisI GCNGC 4 cut(s) 149, 250, 519, 645
BlsI GCNGC 4 cut(s) 150, 251, 520, 646
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 2 cut(s) 317, 343
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 2 cut(s) 493, 505
BmuI ACTGGG 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 261, 432
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 298, 326, 582
Bse1I ACTGG 1 cut(s) 550
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 261, 432
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 4 cut(s) 199, 298, 326, 582
BseMII CTCAG 2 cut(s) 190, 367
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 3 cut(s) 160, 530, 631
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 4 cut(s) 199, 298, 326, 582
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 43, 562
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 2 cut(s) 231, 249
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 189, 366
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 464
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 261, 432
BssMI GATC 2 cut(s) 43, 562
BssNI GRCGYC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 99, 176, 353
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 2 cut(s) 46, 565
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 43, 562
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 230, 376, 653
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 460
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 160, 530, 631
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 494
BtuMI TCGCGA 1 cut(s) 129
CciI TCATGA 1 cut(s) 451
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 317, 343
CseI GACGC 3 cut(s) 71, 376, 428
CviAII CATG 3 cut(s) 371, 452, 503
DdeI CTNAG 3 cut(s) 99, 176, 353
DpnI GATC 2 cut(s) 45, 564
DpnII GATC 2 cut(s) 43, 562
EciI GGCGGA 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 3 cut(s) 278, 389, 549
EcoO109I RGGNCCY 1 cut(s) 317
EcoRI GAATTC 2 cut(s) 141, 266
EcoRII CCWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 3 cut(s) 374, 455, 506
FaqI GGGAC 1 cut(s) 62
FatI CATG 3 cut(s) 370, 451, 502
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 4 cut(s) 149, 250, 519, 645
Fsp4HI GCNGC 4 cut(s) 149, 250, 519, 645
FspBI CTAG 2 cut(s) 282, 443
GlaI GCGC 1 cut(s) 152
GluI GCNGC 4 cut(s) 149, 250, 519, 645
HaeIII GGCC 1 cut(s) 344
HgaI GACGC 3 cut(s) 71, 376, 428
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 3 cut(s) 374, 455, 506
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 5 cut(s) 203, 227, 302, 448, 593
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 111, 428
Hpy188I TCNGA 6 cut(s) 179, 297, 356, 366, 436, 632
Hpy188III TCNNGA 4 cut(s) 47, 128, 320, 452
Hpy8I GTNNAC 2 cut(s) 111, 428
Hpy99I CGWCG 4 cut(s) 41, 59, 65, 257
HpyAV CCTTC 4 cut(s) 13, 97, 302, 412
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 462, 496, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 376, 653
HpyF3I CTNAG 3 cut(s) 99, 176, 353
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 3 cut(s) 374, 455, 506
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 43, 562
LmnI GCTCC 2 cut(s) 436, 481
LpnPI CCDG 9 cut(s) 248, 275, 299, 333, 404, 408, 507, 563, 575
Lsp1109I GCAGC 3 cut(s) 160, 530, 631
LweI GCATC 2 cut(s) 493, 505
MaeI CTAG 2 cut(s) 282, 443
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 22, 256, 598
MalI GATC 2 cut(s) 45, 564
MboI GATC 2 cut(s) 43, 562
MluCI AATT 8 cut(s) 8, 27, 119, 131, 141, 266, 383, 639
MlyI GAGTC 3 cut(s) 212, 236, 457
MnlI CCTC 4 cut(s) 229, 362, 442, 575
MroXI GAANNNNTTC 2 cut(s) 123, 576
MslI CAYNNNNRTG 2 cut(s) 489, 501
MspA1I CMGCKG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 230, 376, 653
NdeII GATC 2 cut(s) 43, 562
NlaIII CATG 3 cut(s) 374, 455, 506
NlaIV GGNNCC 1 cut(s) 318
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 256, 598
NruI TCGCGA 1 cut(s) 129
PagI TCATGA 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 123, 576
PfeI GAWTC 2 cut(s) 302, 593
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 4 cut(s) 150, 251, 520, 646
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 3 cut(s) 211, 235, 456
PpsI GAGTC 3 cut(s) 211, 235, 456
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 2 cut(s) 317, 343
PspPPI RGGWCCY 1 cut(s) 317
PstI CTGCAG 1 cut(s) 464
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 521
RruI TCGCGA 1 cut(s) 129
RseI CAYNNNNRTG 2 cut(s) 489, 501
SatI GCNGC 4 cut(s) 149, 250, 519, 645
Sau3AI GATC 2 cut(s) 43, 562
Sau96I GGNCC 2 cut(s) 317, 343
SchI GAGTC 3 cut(s) 212, 236, 457
ScrFI CCNGG 1 cut(s) 263
SfaNI GCATC 2 cut(s) 493, 505
SfcI CTRYAG 1 cut(s) 460
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 489, 501
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 8 cut(s) 8, 27, 119, 131, 141, 266, 383, 639
SsiI CCGC 2 cut(s) 231, 249
SspMI CTAG 2 cut(s) 282, 443
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 580
TasI AATT 8 cut(s) 8, 27, 119, 131, 141, 266, 383, 639
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 302, 593
TscAI CASTG 1 cut(s) 494
TseFI GTSAC 2 cut(s) 256, 598
TseI GCWGC 3 cut(s) 148, 518, 644
Tsp45I GTSAC 2 cut(s) 256, 598
TspDTI ATGAA 4 cut(s) 198, 468, 627, 651
TspRI CASTG 1 cut(s) 494
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 4 cut(s) 8, 131, 141, 266
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 2 cut(s) 123, 576
XspI CTAG 2 cut(s) 282, 443
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.